Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 3.2e-231 804.7 389 100.0
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 3.2e-231 804.7 389 100.0
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 3.2e-223 778.1 391 96.7
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 5.6e-212 740.7 389 92.8
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 3.7e-211 738.0 391 92.1
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 1.8e-205 719.2 392 90.1
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 3.4e-193 678.3 390 83.6
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 2.9e-184 648.7 384 81.8
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 3.5e-177 625.2 382 79.6
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 2.0e-169 599.4 338 86.1
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 4.2e-159 565.1 311 89.1
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 2.0e-153 546.2 374 72.2
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 7.3e-143 511.1 380 68.9
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 1.0e-136 490.7 329 74.8
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 2.5e-135 486.1 392 62.2
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 1.8e-133 479.9 387 61.5
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 2.6e-132 476.1 392 61.5
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 1.7e-131 473.4 387 60.5
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 2.2e-131 473.0 395 60.5
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 1.1e-130 470.7 378 62.2
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 1.2e-129 467.2 386 61.4
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 2.1e-129 466.5 386 59.6
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.9e-127 459.9 383 59.8
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 4.3e-127 458.8 383 60.8
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 5.6e-127 458.4 383 59.3
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 1.6e-126 456.8 393 58.3
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 1.6e-126 456.8 383 59.3
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 2.1e-126 456.4 387 58.4
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 2.8e-126 456.1 388 56.7
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 3.6e-126 455.7 386 58.3
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 3.6e-126 455.7 391 60.6
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 4.7e-126 455.3 393 58.3
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 6.2e-126 454.9 393 55.7
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.1e-125 454.1 383 59.5
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 1.2e-124 450.7 388 58.5
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 1.5e-124 450.3 389 55.8
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 4.4e-124 448.7 384 58.1
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 5.8e-124 448.4 390 58.5
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 9.9e-124 447.6 390 57.7
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 1.3e-123 447.2 393 56.7
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 1.7e-123 446.8 384 57.3
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 1.7e-123 446.8 392 57.9
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 8.3e-123 444.5 402 57.0
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 2.4e-122 443.0 387 57.1
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 1.2e-121 440.7 394 58.1
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 1.6e-121 440.3 389 56.6
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 4.6e-121 438.7 375 59.2
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 2.3e-120 436.4 384 54.7
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 2.3e-120 436.4 394 55.1
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 2.3e-120 436.4 394 55.3
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 5.1e-120 435.3 395 55.9
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 5.1e-120 435.3 387 58.4
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 2.5e-119 433.0 389 55.8
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 2.8e-118 429.5 394 54.6
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 1.8e-117 426.8 400 57.2
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 2.4e-117 426.4 385 55.3
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 8.9e-117 424.5 394 56.3
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 1.5e-116 423.7 386 55.2
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 1.5e-116 423.7 321 65.4
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 4.4e-116 422.2 381 55.6
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 7.6e-116 421.4 385 55.3
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 8.4e-115 417.9 378 56.6
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 1.1e-114 417.5 393 55.0
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 1.4e-114 417.2 376 56.6
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 1.2e-113 414.1 390 52.8
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 1.6e-113 413.7 391 53.2
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 3.5e-113 412.5 343 61.5
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 1.5e-111 407.1 401 51.1
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 2.5e-111 406.4 390 52.1
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 7.3e-111 404.8 273 76.6
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 1.6e-110 403.7 388 53.9
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 1.1e-109 401.0 395 52.7
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 3.1e-109 399.4 407 52.3
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 2.6e-108 396.4 390 52.6
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 2.2e-107 393.3 434 48.6
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 1.2e-105 387.5 393 52.9
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 4.6e-105 385.6 306 63.4
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.0e-104 382.9 443 47.9
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 3.3e-103 379.4 390 51.5
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 5.6e-103 378.6 388 50.3
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 1.8e-101 373.6 370 54.1
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 1.8e-101 373.6 385 52.2
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 5.6e-95 352.1 390 47.2
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.3e-94 350.9 412 48.5
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 1.2e-92 344.4 383 49.1
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 1.2e-92 344.4 327 53.8
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 2.2e-91 340.1 297 55.6
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 8.7e-88 328.2 411 45.5
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 9.6e-87 324.7 343 52.5
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 3.7e-86 322.8 231 66.7
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 8.2e-86 321.6 288 57.3
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 8.4e-83 311.6 386 45.9
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 8.4e-83 311.6 454 40.7
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 5.5e-82 308.9 311 51.8
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 7.4e-79 298.5 392 42.6
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 1.3e-78 297.7 377 44.8
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 2.1e-65 253.8 274 48.9
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.7e-62 243.0 177 63.8
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 4.0e-56 223.0 142 73.2
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 8.8e-56 221.9 299 43.5
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 3.5e-52 209.9 112 85.7
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 5.0e-51 206.1 290 41.7
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 8.5e-51 205.3 113 81.4
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 3.2e-50 203.4 267 46.4
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 4.2e-50 203.0 126 71.4
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 3.0e-48 196.8 293 40.6
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 4.0e-48 196.4 252 43.3
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.3e-46 191.4 150 60.7
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 2.0e-44 184.1 128 63.3
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 1.7e-43 181.0 205 45.4
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 2.5e-42 177.2 102 76.5
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 5.5e-42 176.0 236 42.4
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 4.0e-40 169.9 226 38.9
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 7.7e-36 155.6 93 77.4
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 6.6e-35 152.5 86 79.1
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 1.8e-32 144.4 119 62.2
A02p14700 Brassica napus HOM05D005922 ORTHO05D006934 5.4e-29 132.9 169 47.3
BraA02t06537Z Brassica rapa HOM05D005922 ORTHO05D006934 5.4e-29 132.9 169 47.3
Oeu031680.1 Olea europaea HOM05D005922 ORTHO05D006934 1.4e-24 118.2 135 48.1
Zm00001eb399130 Zea mays HOM05D005922 ORTHO05D006934 1.8e-24 117.9 84 59.5
PRCOL_00005504 Prasinoderma coloniale HOM05D005922 ORTHO05D006934 8.9e-24 115.5 213 34.7
arahy.Tifrunner.gnm1.ann1.B3UXS8 Arachis hypogaea HOM05D005922 ORTHO05D006934 3.2e-21 107.1 63 76.2
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 1.7e-19 101.3 102 49.0
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 1.7e-19 101.3 102 49.0
Haze_10820 Corylus avellana HOM05D005922 ORTHO05D006934 3.0e-19 100.5 93 59.1
BolC2t08514H Brassica oleracea HOM05D005922 ORTHO05D006934 8.6e-19 99.0 143 42.7
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 2.8e-17 94.0 60 68.3
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 1.8e-16 91.3 57 70.2
CDE11G0599 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 3.1e-16 90.5 90 48.9
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 2.2e-14 84.3 49 75.5
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 2.9e-14 84.0 49 73.5
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 8.3e-14 82.4 50 68.0
SEGI_24854 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 5.1e-11 73.2 225 32.0
Manes.17G089020 Manihot esculenta HOM05D005922 ORTHO05D006934 2.3e-08 64.3 75 48.0
MCO06G046 Micromonas commoda HOM05D005922 ORTHO05D006934 1.3e-06 58.5 84 35.7


User provided reference genes

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