Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38885H Brassica oleracea HOM05D006456 ORTHO05D007588 2.8e-79 298.5 148 100.0
C06p37830 Brassica napus HOM05D006456 ORTHO05D007588 3.7e-79 298.1 147 100.0
BcaC08g45988 Brassica carinata HOM05D006456 ORTHO05D007588 4.8e-47 191.4 92 100.0
A07p32110 Brassica napus HOM05D006456 ORTHO05D007588 7.7e-45 184.1 96 92.7
BraA07t30840Z Brassica rapa HOM05D006456 ORTHO05D007588 1.6e-42 176.4 92 93.5
BcaB03g15404 Brassica carinata HOM05D006456 ORTHO05D007588 1.5e-40 169.9 94 88.3
Sp5g23190 Schrenkiella parvula HOM05D006456 ORTHO05D007588 2.9e-36 155.6 92 84.8
Thhalv10019127m.g Eutrema salsugineum HOM05D006456 ORTHO05D007588 6.6e-36 154.5 92 83.7
AT1G68185 Arabidopsis thaliana HOM05D006456 ORTHO05D007588 8.0e-34 147.5 100 75.0
CARHR060870 Cardamine hirsuta HOM05D006456 ORTHO05D007588 8.3e-31 137.5 92 75.0
AL2G27020 Arabidopsis lyrata HOM05D006456 ORTHO05D007588 3.5e-29 132.1 92 72.8
Carub.0002s1467 Capsella rubella HOM05D006456 ORTHO05D007588 3.5e-29 132.1 92 71.7
Aa31sc140G50 Aethionema arabicum HOM05D006456 ORTHO05D007588 1.5e-27 126.7 92 67.4
Manes.06G064100 Manihot esculenta HOM05D006456 ORTHO05D007588 6.0e-21 104.8 95 58.9
THA.LOC104801669 Tarenaya hassleriana HOM05D006456 ORTHO05D007588 7.8e-21 104.4 76 68.4
Duzib248G0017 Durio zibethinus HOM05D006456 ORTHO05D007588 3.6e-18 95.5 91 60.4
CSS0027890 Camellia sinensis var. sinensis HOM05D006456 ORTHO05D007588 1.8e-17 93.2 107 52.3
CiPaw.06G016000 Carya illinoinensis HOM05D006456 ORTHO05D007588 1.8e-17 93.2 93 57.0
Thecc.02G220100 Theobroma cacao HOM05D006456 ORTHO05D007588 6.8e-17 91.3 89 57.3
Haze_00665 Corylus avellana HOM05D006456 ORTHO05D007588 8.9e-17 90.9 112 50.9
CiPaw.05G243600 Carya illinoinensis HOM05D006456 ORTHO05D007588 1.2e-16 90.5 98 54.1
arahy.Tifrunner.gnm1.ann1.UW2YW6 Arachis hypogaea HOM05D006456 ORTHO05D007588 3.7e-15 85.5 92 53.3
GSVIVG01011822001 Vitis vinifera HOM05D006456 ORTHO05D007588 6.4e-15 84.7 89 52.8
Sed0027511 Sechium edule HOM05D006456 ORTHO05D007588 1.1e-14 84.0 94 50.0
MELO3C012283.2 Cucumis melo HOM05D006456 ORTHO05D007588 1.4e-14 83.6 97 47.4
MD13G1034500 Malus domestica HOM05D006456 ORTHO05D007588 2.4e-14 82.8 92 52.2
Gohir.A05G315000 Gossypium hirsutum HOM05D006456 ORTHO05D007588 4.1e-14 82.0 92 52.2
Gohir.D05G316500 Gossypium hirsutum HOM05D006456 ORTHO05D007588 5.4e-14 81.6 92 52.2
Gorai.009G338700 Gossypium raimondii HOM05D006456 ORTHO05D007588 5.4e-14 81.6 92 52.2
Hund25025 Selenicereus undatus HOM05D006456 ORTHO05D007588 5.4e-14 81.6 97 45.4
TWI75G0343 Tripterygium wilfordii HOM05D006456 ORTHO05D007588 5.4e-14 81.6 93 54.8
Lsat_1_v5_gn_3_56960 Lactuca sativa HOM05D006456 ORTHO05D007588 7.1e-14 81.3 97 50.5
Phvul.007G033000 Phaseolus vulgaris HOM05D006456 ORTHO05D007588 7.1e-14 81.3 92 54.3
Prupe.1G318000 Prunus persica HOM05D006456 ORTHO05D007588 9.2e-14 80.9 92 53.3
ClCG05G022400 Citrullus lanatus HOM05D006456 ORTHO05D007588 2.1e-13 79.7 97 48.5
Rhsim12G0086900 Rhododendron simsii HOM05D006456 ORTHO05D007588 3.5e-13 79.0 97 50.5
vmacro01410 Vaccinium macrocarpon HOM05D006456 ORTHO05D007588 3.5e-13 79.0 97 48.5
Glyma.20G121600 Glycine max HOM05D006456 ORTHO05D007588 7.8e-13 77.8 96 51.0
Lj5g0005162 Lotus japonicus HOM05D006456 ORTHO05D007588 3.0e-12 75.9 95 47.4
Glyma.10G269500 Glycine max HOM05D006456 ORTHO05D007588 3.9e-12 75.5 96 51.0
Aqoxy3G00186 Aquilegia oxysepala HOM05D006456 ORTHO05D007588 5.1e-12 75.1 89 46.1
FAN17G0635 Fragaria x ananassa HOM05D006456 ORTHO05D007588 5.1e-12 75.1 108 45.4
Lalb_Chr17g0338791 Lupinus albus HOM05D006456 ORTHO05D007588 5.1e-12 75.1 94 45.7
CsaV3_5G034690 Cucumis sativus L. HOM05D006456 ORTHO05D007588 6.6e-12 74.7 98 43.9
Atru.chr11.273 Acer truncatum HOM05D006456 ORTHO05D007588 8.6e-12 74.3 93 51.6
CANSAT01G2803 Cannabis sativa HOM05D006456 ORTHO05D007588 1.9e-11 73.2 88 45.5
SGA_v2.0_scaffold170G38812 Striga asiatica HOM05D006456 ORTHO05D007588 2.5e-11 72.8 98 45.9
Oeu014300.2 Olea europaea HOM05D006456 ORTHO05D007588 3.3e-11 72.4 103 44.7
TAR629G3159 Trochodendron aralioides HOM05D006456 ORTHO05D007588 4.3e-11 72.0 133 40.6
MD16G1036000 Malus domestica HOM05D006456 ORTHO05D007588 5.6e-11 71.6 92 47.8
Nn4g23975 Nelumbo nucifera HOM05D006456 ORTHO05D007588 7.3e-11 71.2 92 44.6
Nitab4.5_0001999g0020 Nicotiana tabacum HOM05D006456 ORTHO05D007588 7.3e-11 71.2 98 43.9
Nitab4.5_0012897g0010 Nicotiana tabacum HOM05D006456 ORTHO05D007588 7.3e-11 71.2 98 43.9
MSTRG.2210 Avicennia marina HOM05D006456 ORTHO05D007588 1.6e-10 70.1 97 45.4
Oeu027684.2 Olea europaea HOM05D006456 ORTHO05D007588 1.6e-10 70.1 101 47.5
CAN.G99.9 Capsicum annuum HOM05D006456 ORTHO05D007588 4.7e-10 68.6 103 41.7
QL01p003354 Quercus lobata HOM05D006456 ORTHO05D007588 8.1e-10 67.8 99 43.4
DCAR_007270 Daucus carota HOM05D006456 ORTHO05D007588 1.1e-09 67.4 97 41.2
Ca_11124_v3 Cicer arietinum L. HOM05D006456 ORTHO05D007588 1.4e-09 67.0 97 45.4
FAN22G1705 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.4e-09 67.0 123 38.2
A08p10170 Brassica napus HOM05D011583 ORTHO05D017584 2.4e-09 66.2 62 64.5
A09p42480 Brassica napus HOM05D011583 ORTHO05D017584 2.4e-09 66.2 62 64.5
BraA08t33016Z Brassica rapa HOM05D011583 ORTHO05D017584 2.4e-09 66.2 62 64.5
BraA09t39725Z Brassica rapa HOM05D011583 ORTHO05D017584 2.4e-09 66.2 62 64.5
FAN07G1047 Fragaria x ananassa HOM05D006456 ORTHO05D008764 2.4e-09 66.2 94 46.8
FAN12G2031 Fragaria x ananassa HOM05D006456 ORTHO05D007588 2.4e-09 66.2 93 47.3
FAN12G0878 Fragaria x ananassa HOM05D006456 ORTHO05D007588 3.1e-09 65.9 94 46.8
BcaC01g03290 Brassica carinata HOM05D011583 ORTHO05D017584 5.2e-09 65.1 64 64.1
BcaC07g37557 Brassica carinata HOM05D011583 ORTHO05D007588 5.2e-09 65.1 39 87.2
BolC3t17677H Brassica oleracea HOM05D011583 ORTHO05D017584 5.2e-09 65.1 64 64.1
FvH4_4g26560 Fragaria vesca HOM05D006456 ORTHO05D007588 5.2e-09 65.1 89 47.2
Solyc03g013030.3 Solanum lycopersicum HOM05D006456 ORTHO05D007588 5.2e-09 65.1 99 44.4
Sopen03g020360 Solanum pennellii HOM05D006456 ORTHO05D007588 5.2e-09 65.1 99 44.4
PSO017G1436 Papaver somniferum HOM05D006456 ORTHO05D007588 8.9e-09 64.3 99 45.5
BcaB06g26972 Brassica carinata HOM05D006456 ORTHO05D007588 1.2e-08 63.9 46 67.4
Medtr1g109370 Medicago truncatula HOM05D006456 ORTHO05D007588 1.2e-08 63.9 97 42.3
PSO478G4574 Papaver somniferum HOM05D006456 ORTHO05D007588 1.5e-08 63.5 96 44.8
CDE07G1334 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 2.6e-08 62.8 87 41.4
Lalb_Chr10g0096361 Lupinus albus HOM05D006456 ORTHO05D007588 3.4e-08 62.4 98 42.9
BcaC03g13732 Brassica carinata HOM05D011583 ORTHO05D017584 4.4e-08 62.0 64 62.5
BcaC03g13733 Brassica carinata HOM05D011583 ORTHO05D017584 4.4e-08 62.0 64 62.5
BolC2t07015H Brassica oleracea HOM05D011583 ORTHO05D017584 4.4e-08 62.0 64 62.5
AUR62002792 Chenopodium quinoa HOM05D006456 ORTHO05D007588 5.8e-08 61.6 102 43.1
Sabra10G0089400 Salix brachista HOM05D006456 ORTHO05D007588 5.8e-08 61.6 91 46.2
BcaB03g16564 Brassica carinata HOM05D011583 ORTHO05D007588 9.9e-08 60.8 45 71.1
BcaB07g33544 Brassica carinata HOM05D011583 ORTHO05D007588 9.9e-08 60.8 47 72.3
HanXRQChr15g0477811 Helianthus annuus HOM05D006456 ORTHO05D007588 9.9e-08 60.8 93 46.2
CsaV3_5G006740 Cucumis sativus L. HOM05D006456 ORTHO05D007588 1.3e-07 60.5 100 39.0
Dinv31583 Davidia involucrata HOM05D006456 ORTHO05D007588 1.3e-07 60.5 97 45.4
CDE06G0604 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 2.9e-07 59.3 91 40.7
Cc11_g09550 Coffea canephora HOM05D006456 ORTHO05D007588 3.8e-07 58.9 96 41.7
Cpa.g.sc65.75 Carica papaya HOM05D006456 ORTHO05D007588 6.4e-07 58.2 68 51.5
Atru.chr11.288 Acer truncatum HOM05D006456 ORTHO05D007588 1.1e-06 57.4 91 38.5
A02p03710 Brassica napus HOM05D006456 ORTHO05D007588 2.4e-06 56.2 40 65.0
BcaC07g37113 Brassica carinata HOM05D011583 ORTHO05D007588 3.2e-06 55.8 30 83.3
Potri.010G118900 Populus trichocarpa HOM05D006456 ORTHO05D007588 3.2e-06 55.8 98 40.8
Psat6g223800 Pisum sativum HOM05D006456 ORTHO05D007588 5.4e-06 55.1 98 38.8
arahy.Tifrunner.gnm1.ann1.WCM1NC Arachis hypogaea HOM05D006456 ORTHO05D007588 9.2e-06 54.3 92 41.3


User provided reference genes

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