Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38884H Brassica oleracea HOM05D006456 ORTHO05D007588 2.1e-103 379.0 192 100.0
A07p32110 Brassica napus HOM05D006456 ORTHO05D007588 5.8e-93 344.4 197 92.4
BcaC08g45988 Brassica carinata HOM05D006456 ORTHO05D007588 1.6e-90 336.3 170 100.0
BraA07t30839Z Brassica rapa HOM05D006456 ORTHO05D007588 6.4e-84 314.3 170 95.9
BcaB03g15404 Brassica carinata HOM05D006456 ORTHO05D007588 7.6e-61 237.7 163 81.6
C06p37830 Brassica napus HOM05D006456 ORTHO05D007588 4.6e-58 228.4 119 99.2
Thhalv10019127m.g Eutrema salsugineum HOM05D006456 ORTHO05D007588 2.9e-44 182.6 119 80.7
AT1G68185 Arabidopsis thaliana HOM05D006456 ORTHO05D007588 3.7e-39 165.6 119 75.6
AL2G27020 Arabidopsis lyrata HOM05D006456 ORTHO05D007588 6.3e-39 164.9 119 74.8
CARHR060870 Cardamine hirsuta HOM05D006456 ORTHO05D007588 1.2e-37 160.6 119 72.3
Carub.0002s1467 Capsella rubella HOM05D006456 ORTHO05D007588 2.6e-37 159.5 119 72.3
Aa31sc140G50 Aethionema arabicum HOM05D006456 ORTHO05D007588 1.3e-36 157.1 121 65.3
Sp5g23190 Schrenkiella parvula HOM05D006456 ORTHO05D007588 2.2e-36 156.4 135 68.9
THA.LOC104801669 Tarenaya hassleriana HOM05D006456 ORTHO05D007588 3.5e-29 132.5 118 60.2
Haze_00665 Corylus avellana HOM05D006456 ORTHO05D007588 8.5e-28 127.9 117 58.1
CAN.G99.9 Capsicum annuum HOM05D006456 ORTHO05D007588 2.5e-27 126.3 124 51.6
HanXRQChr15g0477811 Helianthus annuus HOM05D006456 ORTHO05D007588 2.5e-27 126.3 128 54.7
GSVIVG01011822001 Vitis vinifera HOM05D006456 ORTHO05D007588 2.5e-27 126.3 123 53.7
QL01p003354 Quercus lobata HOM05D006456 ORTHO05D007588 4.2e-27 125.6 123 54.5
Dinv31583 Davidia involucrata HOM05D006456 ORTHO05D007588 5.5e-27 125.2 123 53.7
Lj6P752T19 Lonicera japonica HOM05D006456 ORTHO05D007588 9.4e-27 124.4 125 52.8
PGSC0003DMG400010378 Solanum tuberosum HOM05D006456 ORTHO05D007588 1.2e-26 124.0 124 51.6
Migut.E00381 Erythranthe guttata HOM05D006456 ORTHO05D007588 2.1e-26 123.2 122 50.0
Peaxi162Scf00520g00114 Petunia axillaris HOM05D006456 ORTHO05D007588 2.1e-26 123.2 124 51.6
Lsat_1_v5_gn_3_56960 Lactuca sativa HOM05D006456 ORTHO05D007588 4.7e-26 122.1 119 52.1
Ciclev10016584m.g Citrus clementina HOM05D006456 ORTHO05D007588 6.1e-26 121.7 118 54.2
Oeu014300.2 Olea europaea HOM05D006456 ORTHO05D007588 1.0e-25 120.9 124 52.4
MSTRG.2210 Avicennia marina HOM05D006456 ORTHO05D007588 1.4e-25 120.6 118 52.5
Cc11_g09550 Coffea canephora HOM05D006456 ORTHO05D007588 1.4e-25 120.6 126 54.0
Nn4g23975 Nelumbo nucifera HOM05D006456 ORTHO05D007588 1.4e-25 120.6 118 53.4
Solyc03g013030.3 Solanum lycopersicum HOM05D006456 ORTHO05D007588 1.4e-25 120.6 125 49.6
vmacro01410 Vaccinium macrocarpon HOM05D006456 ORTHO05D007588 1.8e-25 120.2 112 57.1
Sopen03g020360 Solanum pennellii HOM05D006456 ORTHO05D007588 2.3e-25 119.8 125 50.4
CANSAT01G2803 Cannabis sativa HOM05D006456 ORTHO05D007588 3.0e-25 119.4 125 52.8
ECA246G1061 Erigeron canadensis HOM05D006456 ORTHO05D007588 3.0e-25 119.4 124 54.0
FAN17G0635 Fragaria x ananassa HOM05D006456 ORTHO05D007588 5.2e-25 118.6 123 54.5
CiPaw.05G243600 Carya illinoinensis HOM05D006456 ORTHO05D007588 6.8e-25 118.2 118 53.4
Sc11g0003890 Simmondsia chinensis HOM05D006456 ORTHO05D007588 6.8e-25 118.2 123 52.8
Manes.06G064100 Manihot esculenta HOM05D006456 ORTHO05D007588 8.8e-25 117.9 118 54.2
TWI75G0343 Tripterygium wilfordii HOM05D006456 ORTHO05D007588 8.8e-25 117.9 118 55.9
Oeu027684.2 Olea europaea HOM05D006456 ORTHO05D007588 1.2e-24 117.5 123 52.0
Rhsim12G0086900 Rhododendron simsii HOM05D006456 ORTHO05D007588 1.2e-24 117.5 123 51.2
TAR629G3159 Trochodendron aralioides HOM05D006456 ORTHO05D007588 1.2e-24 117.5 123 51.2
Atru.chr11.273 Acer truncatum HOM05D006456 ORTHO05D007588 1.5e-24 117.1 121 55.4
Atru.chr11.288 Acer truncatum HOM05D006456 ORTHO05D007588 1.5e-24 117.1 121 55.4
Duzib248G0017 Durio zibethinus HOM05D006456 ORTHO05D007588 2.0e-24 116.7 118 54.2
FAN22G1705 Fragaria x ananassa HOM05D006456 ORTHO05D007588 2.0e-24 116.7 123 52.0
RcHm_v2.0_Chr4g0434211 Rosa chinensis HOM05D006456 ORTHO05D007588 2.0e-24 116.7 122 52.5
Aqoxy3G00186 Aquilegia oxysepala HOM05D006456 ORTHO05D007588 2.6e-24 116.3 123 50.4
MD16G1036000 Malus domestica HOM05D006456 ORTHO05D007588 2.6e-24 116.3 120 53.3
Prupe.1G318000 Prunus persica HOM05D006456 ORTHO05D007588 2.6e-24 116.3 123 52.0
Hund25025 Selenicereus undatus HOM05D006456 ORTHO05D007588 3.4e-24 115.9 118 53.4
unitig_52.g17127 Utricularia gibba HOM05D006456 ORTHO05D007588 5.7e-24 115.2 120 52.5
Thecc.02G220100 Theobroma cacao HOM05D006456 ORTHO05D007588 9.8e-24 114.4 118 53.4
DCAR_007270 Daucus carota HOM05D006456 ORTHO05D007588 1.3e-23 114.0 119 51.3
FvH4_4g26560 Fragaria vesca HOM05D006456 ORTHO05D007588 1.3e-23 114.0 123 51.2
FAN12G0878 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.3e-23 114.0 123 51.2
FAN12G2031 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.3e-23 114.0 123 51.2
Nitab4.5_0001999g0020 Nicotiana tabacum HOM05D006456 ORTHO05D007588 1.3e-23 114.0 124 49.2
PSO017G1436 Papaver somniferum HOM05D006456 ORTHO05D007588 1.7e-23 113.6 119 52.9
PGR119G2311 Punica granatum HOM05D006456 ORTHO05D007588 2.2e-23 113.2 118 49.2
Eucgr.G02230 Eucalyptus grandis HOM05D006456 ORTHO05D007588 2.8e-23 112.8 118 53.4
PSO478G4574 Papaver somniferum HOM05D006456 ORTHO05D007588 2.8e-23 112.8 119 52.9
Gohir.D05G316500 Gossypium hirsutum HOM05D006456 ORTHO05D007588 4.8e-23 112.1 118 51.7
Gorai.009G338700 Gossypium raimondii HOM05D006456 ORTHO05D007588 4.8e-23 112.1 118 51.7
MD13G1034500 Malus domestica HOM05D006456 ORTHO05D007588 4.8e-23 112.1 122 52.5
CSS0027890 Camellia sinensis var. sinensis HOM05D006456 ORTHO05D007588 6.3e-23 111.7 124 50.8
CiPaw.06G016000 Carya illinoinensis HOM05D006456 ORTHO05D007588 6.3e-23 111.7 123 48.0
FAN07G1047 Fragaria x ananassa HOM05D006456 ORTHO05D008764 8.3e-23 111.3 123 51.2
Gohir.A05G315000 Gossypium hirsutum HOM05D006456 ORTHO05D007588 1.1e-22 110.9 118 51.7
Cpa.g.sc65.75 Carica papaya HOM05D006456 ORTHO05D007588 1.4e-22 110.5 118 49.2
HanXRQChr17g0556631 Helianthus annuus HOM05D006456 ORTHO05D007588 2.4e-22 109.8 138 44.2
SGA_v2.0_scaffold170G38812 Striga asiatica HOM05D006456 ORTHO05D007588 3.1e-22 109.4 126 47.6
Lalb_Chr10g0096361 Lupinus albus HOM05D006456 ORTHO05D007588 1.0e-20 104.4 122 45.9
MBI16_g14292_MAGBIO Magnolia biondii HOM05D006456 ORTHO05D007588 1.3e-20 104.0 123 47.2
Sed0026587 Sechium edule HOM05D006456 ORTHO05D007588 1.3e-20 104.0 130 47.7
AUR62014103 Chenopodium quinoa HOM05D006456 ORTHO05D007588 2.3e-20 103.2 123 49.6
Lalb_Chr17g0338791 Lupinus albus HOM05D006456 ORTHO05D007588 2.3e-20 103.2 122 46.7
Phvul.007G033000 Phaseolus vulgaris HOM05D006456 ORTHO05D007588 2.3e-20 103.2 118 45.8
AUR62002792 Chenopodium quinoa HOM05D006456 ORTHO05D007588 2.9e-20 102.8 124 48.4
MELO3C012283.2 Cucumis melo HOM05D006456 ORTHO05D007588 3.8e-20 102.4 126 46.8
VMungo0720G1166 Vigna mungo HOM05D006456 ORTHO05D007588 5.0e-20 102.1 143 42.7
HanXRQChr17g0556611 Helianthus annuus HOM05D006456 ORTHO05D007588 8.6e-20 101.3 123 44.7
EL10Ac6g14282 Beta vulgaris HOM05D006456 ORTHO05D007588 1.5e-19 100.5 119 45.4
ClCG05G022400 Citrullus lanatus HOM05D006456 ORTHO05D007588 3.3e-19 99.4 125 46.4
CsaV3_5G034690 Cucumis sativus L. HOM05D006456 ORTHO05D007588 3.3e-19 99.4 127 44.9
Zm00001eb357890 Zea mays HOM05D006456 ORTHO05D007588 4.2e-19 99.0 126 44.4
CDE07G1334 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 5.5e-19 98.6 118 44.1
Glyma.10G269500 Glycine max HOM05D006456 ORTHO05D007588 5.5e-19 98.6 123 43.1
Glyma.20G121600 Glycine max HOM05D006456 ORTHO05D007588 5.5e-19 98.6 123 44.7
Lj5g0005162 Lotus japonicus HOM05D006456 ORTHO05D007588 5.5e-19 98.6 118 44.9
Ah.02g128170 Amaranthus hybridus HOM05D006456 ORTHO05D007588 1.2e-18 97.4 111 46.8
Sed0027511 Sechium edule HOM05D006456 ORTHO05D007588 1.2e-18 97.4 125 44.8
Sabra10G0089400 Salix brachista HOM05D006456 ORTHO05D007588 1.6e-18 97.1 123 48.8
Psat6g223800 Pisum sativum HOM05D006456 ORTHO05D007588 1.0e-17 94.4 123 43.1
HPP92_004850 Vanilla planifolia HOM05D006456 ORTHO05D007588 1.4e-17 94.0 119 43.7
HPP92_004876 Vanilla planifolia HOM05D006456 ORTHO05D007588 1.4e-17 94.0 119 43.7
TPR.G4830 Trifolium pratense HOM05D006456 ORTHO05D007588 1.8e-17 93.6 123 42.3
Potri.010G118900 Populus trichocarpa HOM05D006456 ORTHO05D007588 2.3e-17 93.2 111 48.6
arahy.Tifrunner.gnm1.ann1.UW2YW6 Arachis hypogaea HOM05D006456 ORTHO05D007588 1.2e-16 90.9 113 46.9
Ca_11124_v3 Cicer arietinum L. HOM05D006456 ORTHO05D007588 2.0e-16 90.1 123 44.7
Medtr1g109370 Medicago truncatula HOM05D006456 ORTHO05D007588 2.0e-16 90.1 123 39.8
arahy.Tifrunner.gnm1.ann1.WCM1NC Arachis hypogaea HOM05D006456 ORTHO05D007588 2.6e-16 89.7 113 46.9
ATR0053G055 Amborella trichopoda HOM05D006456 ORTHO05D007588 4.9e-15 85.5 135 37.8
Os01g0607300 Oryza sativa ssp. japonica HOM05D006456 ORTHO05D007588 3.5e-13 79.3 120 34.2
COL.COLO4_36793 Corchorus olitorius HOM05D006456 ORTHO05D007588 1.9e-11 73.6 50 66.0
CsaV3_5G006740 Cucumis sativus L. HOM05D006456 ORTHO05D007588 2.8e-10 69.7 115 40.0
Pp3c2_12120 Physcomitrium patens HOM05D006456 ORTHO05D007588 2.6e-08 63.2 105 31.4
Pp3c14_19600 Physcomitrium patens HOM05D006456 ORTHO05D007588 1.3e-07 60.8 72 40.3
Mapoly0066s0083 Marchantia polymorpha HOM05D006456 ORTHO05D007588 2.9e-07 59.7 111 35.1
SHI16259 Sapria himalayana HOM05D006456 ORTHO05D007588 2.9e-07 59.7 49 59.2
Ca_06095_v3 Cicer arietinum L. HOM05D000984 ORTHO05D001096 2.4e-06 56.6 83 32.5
MCO07G657 Micromonas commoda HOM05D000984 ORTHO05D001096 2.4e-06 56.6 68 38.2
MD05G1173700 Malus domestica HOM05D000984 ORTHO05D001096 3.2e-06 56.2 83 32.5
Cre16.g675749 Chlamydomonas reinhardtii HOM05D000984 ORTHO05D001096 4.1e-06 55.8 83 31.3
MD10G1161600 Malus domestica HOM05D000984 ORTHO05D001096 5.4e-06 55.5 83 32.5
FvH4_2g18770 Fragaria vesca HOM05D000984 ORTHO05D001096 7.0e-06 55.1 83 32.5
FAN15G0792 Fragaria x ananassa HOM05D000984 ORTHO05D001096 7.0e-06 55.1 83 32.5
FAN24G1775 Fragaria x ananassa HOM05D000984 ORTHO05D001096 7.0e-06 55.1 83 32.5
FAN27G3469 Fragaria x ananassa HOM05D000984 ORTHO05D001096 7.0e-06 55.1 83 32.5
Psat0s2607g0040 Pisum sativum HOM05D000984 ORTHO05D001096 9.2e-06 54.7 84 33.3
RcHm_v2.0_Chr6g0284511 Rosa chinensis HOM05D000984 ORTHO05D001096 9.2e-06 54.7 90 32.2


User provided reference genes

Program Settings