Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45971 Brassica carinata HOM05D003134 ORTHO05D003500 5.0e-73 277.7 144 100.0
C06p37610 Brassica napus HOM05D003134 ORTHO05D003500 5.0e-73 277.7 144 100.0
BolC6t38864H Brassica oleracea HOM05D003134 ORTHO05D003500 5.0e-73 277.7 144 100.0
A07p32020 Brassica napus HOM05D003134 ORTHO05D003500 2.7e-66 255.4 144 93.8
BraA07t30832Z Brassica rapa HOM05D003134 ORTHO05D003500 2.7e-66 255.4 144 93.8
BcaB03g15416 Brassica carinata HOM05D003134 ORTHO05D003500 5.7e-61 237.7 144 88.9
BolC2t08556H Brassica oleracea HOM05D003134 ORTHO05D003500 3.8e-57 224.9 150 82.7
BcaB05g24377 Brassica carinata HOM05D003134 ORTHO05D003500 2.1e-55 219.2 150 80.0
C02p24530 Brassica napus HOM05D003134 ORTHO05D003500 2.3e-54 215.7 150 81.3
A02p14980 Brassica napus HOM05D003134 ORTHO05D003500 3.0e-54 215.3 150 80.0
BraA02t06565Z Brassica rapa HOM05D003134 ORTHO05D003500 3.0e-54 215.3 150 80.0
Sp5g23500 Schrenkiella parvula HOM05D003134 ORTHO05D003500 4.0e-54 214.9 151 81.5
Thhalv10019521m.g Eutrema salsugineum HOM05D003134 ORTHO05D003500 1.1e-48 196.8 152 77.6
BcaC08g46286 Brassica carinata HOM05D003134 ORTHO05D003500 1.2e-47 193.4 147 76.2
BcaB03g15807 Brassica carinata HOM05D003134 ORTHO05D003500 6.2e-47 191.0 150 74.7
C06p41530 Brassica napus HOM05D003134 ORTHO05D003500 4.4e-45 184.9 149 74.5
BolC6t39271H Brassica oleracea HOM05D003134 ORTHO05D003500 4.4e-45 184.9 149 74.5
BcaC08g46282 Brassica carinata HOM05D003134 ORTHO05D003500 2.2e-44 182.6 149 73.8
A07p34840 Brassica napus HOM05D003134 ORTHO05D003500 2.2e-44 182.6 149 74.5
BraA07t31102Z Brassica rapa HOM05D003134 ORTHO05D003500 2.2e-44 182.6 149 74.5
Carub.0002s1492 Capsella rubella HOM05D003134 ORTHO05D003500 3.6e-39 165.2 159 66.7
CARHR061210 Cardamine hirsuta HOM05D003134 ORTHO05D003500 4.7e-39 164.9 157 65.6
AL2G27290 Arabidopsis lyrata HOM05D003134 ORTHO05D003500 4.0e-38 161.8 153 66.0
Aa31LG4G14620 Aethionema arabicum HOM05D003134 ORTHO05D003500 7.5e-37 157.5 154 63.6
THA.LOC104808293 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 2.4e-30 136.0 166 53.6
AT1G68430 Arabidopsis thaliana HOM05D003134 ORTHO05D003500 1.2e-29 133.7 153 58.8
Manes.06G065600 Manihot esculenta HOM05D003134 ORTHO05D003500 3.8e-20 102.1 156 44.9
Thecc.02G223300 Theobroma cacao HOM05D003134 ORTHO05D003500 4.2e-19 98.6 166 44.6
Ciclev10016989m.g Citrus clementina HOM05D003134 ORTHO05D003500 7.1e-19 97.8 173 44.5
Prupe.1G315800 Prunus persica HOM05D003134 ORTHO05D003500 9.3e-19 97.4 149 47.0
COL.COLO4_32156 Corchorus olitorius HOM05D003134 ORTHO05D003500 2.1e-18 96.3 166 44.0
Duzib251G0591 Durio zibethinus HOM05D003134 ORTHO05D003500 2.7e-18 95.9 163 45.4
Gohir.D02G171600 Gossypium hirsutum HOM05D003134 ORTHO05D003500 3.5e-18 95.5 165 45.5
Gorai.005G193000 Gossypium raimondii HOM05D003134 ORTHO05D003500 3.5e-18 95.5 165 45.5
Sabra10G0091400 Salix brachista HOM05D003134 ORTHO05D003500 6.0e-18 94.7 158 43.0
Cfa015853 Carpinus fangiana HOM05D003134 ORTHO05D003500 7.8e-18 94.4 151 49.0
TWI31G0745 Tripterygium wilfordii HOM05D003134 ORTHO05D003500 7.8e-18 94.4 167 42.5
Cpa.g.sc65.57 Carica papaya HOM05D003134 ORTHO05D003500 3.9e-17 92.0 168 41.7
Cfa015849 Carpinus fangiana HOM05D003134 ORTHO05D003500 3.9e-17 92.0 155 46.5
Cfa015852 Carpinus fangiana HOM05D003134 ORTHO05D003500 5.1e-17 91.7 151 48.3
Gohir.A03G148500 Gossypium hirsutum HOM05D003134 ORTHO05D003500 8.7e-17 90.9 165 44.2
CiPaw.05G241000 Carya illinoinensis HOM05D003134 ORTHO05D003500 4.3e-16 88.6 158 43.0
MD16G1038900 Malus domestica HOM05D003134 ORTHO05D003500 5.6e-16 88.2 150 42.0
Potri.010G121300 Populus trichocarpa HOM05D003134 ORTHO05D003500 7.3e-16 87.8 156 37.8
QL01p040313 Quercus lobata HOM05D003134 ORTHO05D003500 9.6e-16 87.4 162 42.0
FvH4_4g26860 Fragaria vesca HOM05D003134 ORTHO05D003500 2.8e-15 85.9 146 43.8
FAN12G3405 Fragaria x ananassa HOM05D003134 ORTHO05D003500 8.1e-15 84.3 145 42.8
Oeu012575.1 Olea europaea HOM05D003134 ORTHO05D003500 8.1e-15 84.3 162 42.0
RcHm_v2.0_Chr4g0434621 Rosa chinensis HOM05D003134 ORTHO05D003500 1.1e-14 84.0 149 44.3
Glyma.20G119200 Glycine max HOM05D003134 ORTHO05D003500 1.4e-14 83.6 146 41.1
Lalb_Chr02g0145791 Lupinus albus HOM05D003134 ORTHO05D003500 1.4e-14 83.6 148 43.9
Sabra04G0066000 Salix brachista HOM05D003134 ORTHO05D003500 1.8e-14 83.2 149 40.9
FAN22G0900 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.4e-14 82.8 148 44.6
Ciclev10013038m.g Citrus clementina HOM05D003134 ORTHO05D003500 4.0e-14 82.0 153 41.8
CSS0042149 Camellia sinensis var. sinensis HOM05D003134 ORTHO05D003500 6.9e-14 81.3 166 39.8
Oeu012577.1 Olea europaea HOM05D003134 ORTHO05D003500 6.9e-14 81.3 159 41.5
Cpa.g.sc170.42 Carica papaya HOM05D003134 ORTHO05D003500 9.0e-14 80.9 168 36.9
MD13G1036300 Malus domestica HOM05D003134 ORTHO05D003500 9.0e-14 80.9 150 39.3
Lsat_1_v5_gn_3_80541 Lactuca sativa HOM05D003134 ORTHO05D003500 1.5e-13 80.1 150 40.7
Nn3g17932 Nelumbo nucifera HOM05D003134 ORTHO05D003500 1.5e-13 80.1 164 40.2
CANSAT01G0067 Cannabis sativa HOM05D003134 ORTHO05D003500 2.0e-13 79.7 175 37.7
TAR374G1690 Trochodendron aralioides HOM05D003134 ORTHO05D003500 2.0e-13 79.7 157 38.9
Duzib268G0372 Durio zibethinus HOM05D003134 ORTHO05D003500 3.4e-13 79.0 164 42.7
Prupe.3G146400 Prunus persica HOM05D003134 ORTHO05D003500 4.5e-13 78.6 170 39.4
Oeu039736.1 Olea europaea HOM05D003134 ORTHO05D003500 5.8e-13 78.2 159 39.0
SGA_v2.0_scaffold49G18114 Striga asiatica HOM05D003134 ORTHO05D003500 5.8e-13 78.2 153 39.9
CANSAT78G1475 Cannabis sativa HOM05D003134 ORTHO05D003500 1.7e-12 76.6 174 38.5
Hma1.2p1_1109F.1_g258190 Hydrangea macrophylla HOM05D003134 ORTHO05D003500 1.7e-12 76.6 160 40.0
SalBow5G3107 Salvia bowleyana HOM05D003134 ORTHO05D003500 2.2e-12 76.3 149 38.9
SalBow5G4218 Salvia bowleyana HOM05D003134 ORTHO05D003500 2.2e-12 76.3 149 38.9
Oeu036853.1 Olea europaea HOM05D003134 ORTHO05D003500 2.9e-12 75.9 160 36.9
Lj4P188T25 Lonicera japonica HOM05D003134 ORTHO05D003500 3.8e-12 75.5 157 40.1
Phvul.007G030600 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 3.8e-12 75.5 149 41.6
Atru.chr1.1630 Acer truncatum HOM05D003134 ORTHO05D003500 4.9e-12 75.1 156 35.3
ClCG01G005860 Citrullus lanatus HOM05D003134 ORTHO05D003500 4.9e-12 75.1 156 39.7
FAN07G2257 Fragaria x ananassa HOM05D003134 ORTHO05D003500 4.9e-12 75.1 142 43.0
VMungo0720G1250 Vigna mungo HOM05D000260 ORTHO05D000318 6.4e-12 74.7 147 42.2
MD17G1247700 Malus domestica HOM05D003134 ORTHO05D003500 8.4e-12 74.3 170 39.4
Sp5g21880 Schrenkiella parvula HOM05D003134 ORTHO05D003500 8.4e-12 74.3 167 37.7
DCAR_021449 Daucus carota HOM05D003134 ORTHO05D003500 1.1e-11 73.9 154 35.7
CsaV3_5G028830 Cucumis sativus L. HOM05D003134 ORTHO05D003500 1.4e-11 73.6 163 41.1
Rhsim08G0083300 Rhododendron simsii HOM05D003134 ORTHO05D003500 1.4e-11 73.6 159 39.0
Sp7g03820 Schrenkiella parvula HOM05D003134 ORTHO05D003500 1.4e-11 73.6 164 38.4
Migut.H00233 Erythranthe guttata HOM05D003134 ORTHO05D003500 1.9e-11 73.2 165 37.6
PGR042G1462 Punica granatum HOM05D003134 ORTHO05D003500 1.9e-11 73.2 166 36.1
PGR119G2525 Punica granatum HOM05D003134 ORTHO05D003500 1.9e-11 73.2 152 42.8
Medtr1g110190 Medicago truncatula HOM05D003134 ORTHO05D003500 2.4e-11 72.8 149 40.9
TAR433G0003 Trochodendron aralioides HOM05D003134 ORTHO05D003500 2.4e-11 72.8 156 37.8
Dinv33962 Davidia involucrata HOM05D003134 ORTHO05D003500 3.2e-11 72.4 162 37.7
Dinv34801 Davidia involucrata HOM05D003134 ORTHO05D003500 5.4e-11 71.6 163 38.7
Sc10g0001080 Simmondsia chinensis HOM05D003134 ORTHO05D003500 5.4e-11 71.6 164 38.4
Potri.017G117866 Populus trichocarpa HOM05D003134 ORTHO05D003500 7.1e-11 71.2 150 36.7
Solyc02g086260.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 7.1e-11 71.2 159 39.0
MELO3C008147.2 Cucumis melo HOM05D003134 ORTHO05D003500 9.3e-11 70.9 167 37.7
FAN17G2365 Fragaria x ananassa HOM05D003134 ORTHO05D003500 9.3e-11 70.9 147 38.8
Sed0004988 Sechium edule HOM05D003134 ORTHO05D003500 9.3e-11 70.9 154 40.9
TPR.G36596 Trifolium pratense HOM05D003134 ORTHO05D003500 9.3e-11 70.9 164 36.6
SalBow3G2725 Salvia bowleyana HOM05D003134 ORTHO05D003500 1.6e-10 70.1 151 38.4
Cc07_g08620 Coffea canephora HOM05D003134 ORTHO05D003500 2.1e-10 69.7 172 35.5
Manes.02G070500 Manihot esculenta HOM05D003134 ORTHO05D003500 2.1e-10 69.7 158 36.1
unitig_0.g841 Utricularia gibba HOM05D003134 ORTHO05D003500 2.7e-10 69.3 144 35.4
Solyc03g034300.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 3.5e-10 68.9 153 37.9
Lj5g0013847 Lotus japonicus HOM05D003134 ORTHO05D003500 6.0e-10 68.2 162 37.7
Medtr7g082520 Medicago truncatula HOM05D003134 ORTHO05D003500 6.0e-10 68.2 163 34.4
THA.LOC104823851 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 6.0e-10 68.2 157 36.9
C06p43260 Brassica napus HOM05D003134 ORTHO05D003500 7.9e-10 67.8 167 35.9
CsaV3_2G033780 Cucumis sativus L. HOM05D003134 ORTHO05D003500 7.9e-10 67.8 172 37.2
Sed0003377 Sechium edule HOM05D003134 ORTHO05D003500 7.9e-10 67.8 156 37.8
PGSC0003DMG400002449 Solanum tuberosum HOM05D003134 ORTHO05D003500 7.9e-10 67.8 172 33.7
Potri.004G097200 Populus trichocarpa HOM05D003134 ORTHO05D003500 1.0e-09 67.4 153 37.3
MELO3C005343.2 Cucumis melo HOM05D003134 ORTHO05D003500 1.3e-09 67.0 164 40.2
Oeu008433.1 Olea europaea HOM05D003134 ORTHO05D003500 1.3e-09 67.0 159 34.0
Psat3g098080 Pisum sativum HOM05D003134 ORTHO05D003500 1.3e-09 67.0 166 34.9
Sed0007756 Sechium edule HOM05D003134 ORTHO05D003500 1.3e-09 67.0 162 37.0
ClCG11G007810 Citrullus lanatus HOM05D003134 ORTHO05D003500 2.3e-09 66.2 170 37.1
Glyma.02G088600 Glycine max HOM05D003134 ORTHO05D003500 2.3e-09 66.2 167 37.7
PGSC0003DMG400024380 Solanum tuberosum HOM05D003134 ORTHO05D003500 2.3e-09 66.2 172 33.1
Actinidia17642 Actinidia chinensis HOM05D003134 ORTHO05D003500 3.0e-09 65.9 149 37.6
Ah.16g101650 Amaranthus hybridus HOM05D003134 ORTHO05D003500 3.0e-09 65.9 166 36.1
AUR62009019 Chenopodium quinoa HOM05D003134 ORTHO05D003500 3.0e-09 65.9 174 35.1
AUR62023283 Chenopodium quinoa HOM05D003134 ORTHO05D003500 3.0e-09 65.9 174 36.2
Haze_14180 Corylus avellana HOM05D003134 ORTHO05D003500 3.0e-09 65.9 173 37.6
FAN03G2307 Fragaria x ananassa HOM05D003134 ORTHO05D003500 3.0e-09 65.9 164 35.4
FAN12G3727 Fragaria x ananassa HOM05D003134 ORTHO05D003500 3.0e-09 65.9 98 45.9
Lalb_Chr10g0091341 Lupinus albus HOM05D003134 ORTHO05D003500 3.0e-09 65.9 157 38.9
Sopen03g007090 Solanum pennellii HOM05D003134 ORTHO05D003500 3.0e-09 65.9 162 34.6
TAR622G0779 Trochodendron aralioides HOM05D003134 ORTHO05D003500 3.0e-09 65.9 158 36.1
TAR622G1269 Trochodendron aralioides HOM05D003134 ORTHO05D003500 3.0e-09 65.9 158 36.1
Ca_08085_v3 Cicer arietinum L. HOM05D003134 ORTHO05D003500 3.9e-09 65.5 162 33.3
BcaB03g15220 Brassica carinata HOM05D003134 ORTHO05D003500 5.1e-09 65.1 170 34.1
Psat6g225360 Pisum sativum HOM05D003134 ORTHO05D003500 5.1e-09 65.1 148 39.2
Glyma.18G294900 Glycine max HOM05D003134 ORTHO05D003500 6.7e-09 64.7 166 36.1
Oeu030792.1 Olea europaea HOM05D000260 ORTHO05D000318 6.7e-09 64.7 150 32.0
FAN01G0579 Fragaria x ananassa HOM05D003134 ORTHO05D003500 8.7e-09 64.3 165 33.9
Manes.01G112200 Manihot esculenta HOM05D003134 ORTHO05D003500 8.7e-09 64.3 162 35.8
Peaxi162Scf00104g00142 Petunia axillaris HOM05D003134 ORTHO05D003500 8.7e-09 64.3 149 37.6
FAN14G3652 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.1e-08 63.9 165 33.9
Phvul.008G007800 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 1.1e-08 63.9 159 36.5
Thhalv10019248m.g Eutrema salsugineum HOM05D003134 ORTHO05D003500 1.5e-08 63.5 169 34.9
MBI16_g37123_MAGBIO Magnolia biondii HOM05D003134 ORTHO05D003500 1.5e-08 63.5 157 34.4
RcHm_v2.0_Chr1g0326241 Rosa chinensis HOM05D003134 ORTHO05D003500 1.5e-08 63.5 176 34.7
VMungo1383G0351 Vigna mungo HOM05D003134 ORTHO05D003500 1.5e-08 63.5 169 34.9
BraA07t30998Z Brassica rapa HOM05D003134 ORTHO05D003500 2.5e-08 62.8 168 35.7
BcaC08g46122 Brassica carinata HOM05D003134 ORTHO05D003500 3.3e-08 62.4 168 35.7
PSO170G0811 Papaver somniferum HOM05D003134 ORTHO05D003500 3.3e-08 62.4 164 34.8
Migut.L00500 Erythranthe guttata HOM05D003134 ORTHO05D003500 4.3e-08 62.0 167 34.7
Potri.008G123800 Populus trichocarpa HOM05D003134 ORTHO05D003500 4.3e-08 62.0 103 42.7
EL10Ac2g04546 Beta vulgaris HOM05D003134 ORTHO05D003500 5.6e-08 61.6 172 33.7
CiPaw.03G063500 Carya illinoinensis HOM05D003134 ORTHO05D003500 5.6e-08 61.6 186 32.3
Nitab4.5_0015828g0010 Nicotiana tabacum HOM05D003134 ORTHO05D003500 5.6e-08 61.6 159 34.0
Gohir.D11G171400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 7.4e-08 61.2 168 32.7
Gorai.007G183800 Gossypium raimondii HOM05D003134 ORTHO05D003500 7.4e-08 61.2 168 32.7
Lj1g0014230 Lotus japonicus HOM05D003134 ORTHO05D003500 7.4e-08 61.2 173 32.9
A07p33710 Brassica napus HOM05D003134 ORTHO05D003500 9.6e-08 60.8 169 35.5
Duzib248G0302 Durio zibethinus HOM05D003134 ORTHO05D003500 9.6e-08 60.8 81 46.9
Nitab4.5_0000625g0110 Nicotiana tabacum HOM05D003134 ORTHO05D003500 9.6e-08 60.8 159 35.2
Gohir.A11G165400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 1.3e-07 60.5 168 32.7
THA.LOC104805579 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 1.3e-07 60.5 176 33.5
AL2G25140 Arabidopsis lyrata HOM05D003134 ORTHO05D003500 1.6e-07 60.1 166 34.9
FAN02G1640 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.6e-07 60.1 165 34.5
Cfa007900 Carpinus fangiana HOM05D003134 ORTHO05D003500 2.8e-07 59.3 176 35.8
FAN10G2348 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.8e-07 59.3 165 33.3
HanXRQChr12g0375681 Helianthus annuus HOM05D003134 ORTHO05D003500 2.8e-07 59.3 161 35.4
Nitab4.5_0000753g0120 Nicotiana tabacum HOM05D003134 ORTHO05D003500 2.8e-07 59.3 114 39.5
PSO017G0284 Papaver somniferum HOM05D003134 ORTHO05D003500 6.2e-07 58.2 166 36.7
PGR004G0132 Punica granatum HOM05D003134 ORTHO05D003500 6.2e-07 58.2 166 33.7
FAN10G3294 Fragaria x ananassa HOM05D000266 ORTHO05D000765 8.1e-07 57.8 165 33.3
FAN23G1965 Fragaria x ananassa HOM05D003134 ORTHO05D003500 8.1e-07 57.8 165 33.3
FAN28G2684 Fragaria x ananassa HOM05D003134 ORTHO05D003500 8.1e-07 57.8 165 33.3
Aa31LG2G3400 Aethionema arabicum HOM05D003134 ORTHO05D003500 1.1e-06 57.4 181 30.4
Duzib138G0856 Durio zibethinus HOM05D003134 ORTHO05D003500 1.4e-06 57.0 170 30.6
ECA238G3055 Erigeron canadensis HOM05D003134 ORTHO05D003500 1.4e-06 57.0 161 34.8
FvH4_7g03610 Fragaria vesca HOM05D003134 ORTHO05D003500 1.4e-06 57.0 167 33.5
FAN06G4960 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.4e-06 57.0 167 33.5
ATR1125G046 Amborella trichopoda HOM05D003134 ORTHO05D003500 2.4e-06 56.2 176 31.8
Duzib133G1507 Durio zibethinus HOM05D003134 ORTHO05D003500 3.1e-06 55.8 175 30.3
Lsat_1_v5_gn_2_81120 Lactuca sativa HOM05D003134 ORTHO05D003500 3.1e-06 55.8 159 34.0
Phvul.004G066700 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 3.1e-06 55.8 147 36.1
QL02p049588 Quercus lobata HOM05D003134 ORTHO05D003500 3.1e-06 55.8 185 32.4
Carub.0002s1311 Capsella rubella HOM05D003134 ORTHO05D003500 4.0e-06 55.5 168 32.7
Peaxi162Scf00394g00095 Petunia axillaris HOM05D003134 ORTHO05D003500 4.0e-06 55.5 142 32.4
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 9.0e-06 54.3 109 41.3


User provided reference genes

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