Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38839H Brassica oleracea HOM05D012012 ORTHO05D013530 3.4e-46 188.0 95 100.0
BcaC08g45942 Brassica carinata HOM05D012012 ORTHO05D013530 1.3e-45 186.0 95 98.9
C06p37370 Brassica napus HOM05D012012 ORTHO05D013530 1.3e-45 186.0 95 98.9
A07p31820 Brassica napus HOM05D012012 ORTHO05D013530 4.4e-33 144.4 76 93.4
BraA07t30809Z Brassica rapa HOM05D012012 ORTHO05D013530 4.4e-33 144.4 76 93.4
BraA07t30811Z Brassica rapa HOM05D012012 ORTHO05D013530 1.1e-31 139.8 90 77.8
A07p31830 Brassica napus HOM05D012012 ORTHO05D013530 4.5e-30 134.4 90 75.6
C06p37390 Brassica napus HOM05D012012 ORTHO05D013530 7.2e-28 127.1 104 68.3
BolC6t38841H Brassica oleracea HOM05D012012 ORTHO05D013530 2.1e-27 125.6 104 67.3
BcaC08g45940 Brassica carinata HOM05D012012 ORTHO05D013530 1.0e-26 123.2 99 69.7
BcaNung06173 Brassica carinata HOM05D012012 ORTHO05D013530 2.6e-25 118.6 83 77.1
BraA03t11947Z Brassica rapa HOM05D012012 ORTHO05D013530 1.1e-23 113.2 82 72.0
Sp4g00800 Schrenkiella parvula HOM05D003095 ORTHO05D003517 7.0e-23 110.5 88 68.2
Thhalv10000397m.g Eutrema salsugineum HOM05D003095 ORTHO05D003517 8.3e-16 87.0 62 67.7
AT2G21640 Arabidopsis thaliana HOM05D003095 ORTHO05D003517 4.1e-15 84.7 94 46.8
A09p58070 Brassica napus HOM05D003095 ORTHO05D003517 4.5e-14 81.3 91 51.6
BraA09t41195Z Brassica rapa HOM05D003095 ORTHO05D003517 4.5e-14 81.3 91 51.6
BcaB08g34990 Brassica carinata HOM05D003095 ORTHO05D003517 1.0e-13 80.1 57 68.4
BcaC07g41130 Brassica carinata HOM05D001159 ORTHO05D001712 1.0e-13 80.1 90 51.1
BolC8t51695H Brassica oleracea HOM05D001159 ORTHO05D001712 1.0e-13 80.1 90 51.1
AL4G10840 Arabidopsis lyrata HOM05D003095 ORTHO05D003517 1.7e-13 79.3 95 46.3
C03p32890 Brassica napus HOM05D012012 ORTHO05D013530 6.5e-13 77.4 46 78.3
C08p41320 Brassica napus HOM05D003095 ORTHO05D003517 1.1e-12 76.6 91 48.4
Carub.0004s0067 Capsella rubella HOM05D003095 ORTHO05D003517 7.2e-12 73.9 94 42.6
CSS0033942 Camellia sinensis var. sinensis HOM05D003095 ORTHO05D003517 1.0e-10 70.1 98 43.9
CARHR112630 Cardamine hirsuta HOM05D003095 ORTHO05D003517 4.0e-10 68.2 76 44.7
THA.LOC104804132 Tarenaya hassleriana HOM05D003095 ORTHO05D003517 2.8e-08 62.0 94 43.6
Lalb_Chr25g0280921 Lupinus albus HOM05D003095 ORTHO05D003517 6.3e-08 60.8 97 42.3
Phvul.007G250700 Phaseolus vulgaris HOM05D003095 ORTHO05D003517 6.3e-08 60.8 94 40.4
Lj4g0025197 Lotus japonicus HOM05D003095 ORTHO05D003517 1.8e-07 59.3 94 40.4
MD10G1075100 Malus domestica HOM05D003095 ORTHO05D003517 1.8e-07 59.3 95 43.2
Manes.17G101700 Manihot esculenta HOM05D003095 ORTHO05D003517 4.1e-07 58.2 94 38.3
Glyma.02G157900 Glycine max HOM05D003095 ORTHO05D003517 5.4e-07 57.8 94 42.6
Psat5g223200 Pisum sativum HOM05D003095 ORTHO05D003517 9.2e-07 57.0 62 46.8
Prupe.8G064900 Prunus persica HOM05D003095 ORTHO05D003517 9.2e-07 57.0 97 39.2
arahy.Tifrunner.gnm1.ann1.86RK4S Arachis hypogaea HOM05D003095 ORTHO05D003517 1.2e-06 56.6 65 52.3
arahy.Tifrunner.gnm1.ann1.PX0JLD Arachis hypogaea HOM05D003095 ORTHO05D003517 1.2e-06 56.6 65 52.3
Gohir.A13G009200 Gossypium hirsutum HOM05D003095 ORTHO05D003517 1.2e-06 56.6 62 51.6
Prupe.8G096200 Prunus persica HOM05D003095 ORTHO05D003517 1.2e-06 56.6 97 38.1
Thecc.01G149400 Theobroma cacao HOM05D003095 ORTHO05D003517 1.2e-06 56.6 97 39.2
Ca_14242_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 1.6e-06 56.2 94 39.4
Gorai.013G010600 Gossypium raimondii HOM05D003095 ORTHO05D003517 1.6e-06 56.2 87 43.7
LjContig00049g0022514 Lotus japonicus HOM05D003095 ORTHO05D003517 1.6e-06 56.2 94 39.4
C05p61660 Brassica napus HOM05D003095 ORTHO05D003517 2.0e-06 55.8 94 39.4
Thhalv10026620m.g Eutrema salsugineum HOM05D003095 ORTHO05D003517 2.0e-06 55.8 94 40.4
FvH4_4g27401 Fragaria vesca HOM05D003095 ORTHO05D003517 2.0e-06 55.8 104 36.5
Glyma.06G309100 Glycine max HOM05D003095 ORTHO05D003517 2.0e-06 55.8 97 41.2
Gohir.A13G067200 Gossypium hirsutum HOM05D003095 ORTHO05D003517 2.0e-06 55.8 65 47.7
Gohir.D13G009900 Gossypium hirsutum HOM05D003095 ORTHO05D003517 2.0e-06 55.8 62 51.6
arahy.Tifrunner.gnm1.ann1.RU14FQ Arachis hypogaea HOM05D003095 ORTHO05D003517 2.7e-06 55.5 94 39.4
FAN24G2144 Fragaria x ananassa HOM05D003095 ORTHO05D003517 3.5e-06 55.1 87 39.1
Atru.chr5.3024 Acer truncatum HOM05D003095 ORTHO05D003517 4.5e-06 54.7 97 36.1
BcaC05g30110 Brassica carinata HOM05D003095 ORTHO05D003517 4.5e-06 54.7 94 38.3
Nitab4.5_0003811g0120 Nicotiana tabacum HOM05D003095 ORTHO05D003517 4.5e-06 54.7 94 36.2
Nitab4.5_0011729g0020 Nicotiana tabacum HOM05D003095 ORTHO05D003517 4.5e-06 54.7 97 36.1
RcHm_v2.0_Chr6g0264531 Rosa chinensis HOM05D003095 ORTHO05D003517 4.5e-06 54.7 87 39.1
Medtr3g013450 Medicago truncatula HOM05D003095 ORTHO05D003517 5.9e-06 54.3 94 38.3
Sopen01g051870 Solanum pennellii HOM05D003095 ORTHO05D003517 5.9e-06 54.3 93 37.6
BcaC05g30157 Brassica carinata HOM05D003095 ORTHO05D003517 7.8e-06 53.9 94 38.3
CARHR247460 Cardamine hirsuta HOM05D003095 ORTHO05D003517 7.8e-06 53.9 94 39.4
MD05G1065400 Malus domestica HOM05D003095 ORTHO05D003517 7.8e-06 53.9 95 40.0
Oeu055590.1 Olea europaea HOM05D003095 ORTHO05D003517 7.8e-06 53.9 97 39.2
PSO700G0195 Papaver somniferum HOM05D003095 ORTHO05D003517 7.8e-06 53.9 73 41.1
QL09p041665 Quercus lobata HOM05D003095 ORTHO05D003517 7.8e-06 53.9 98 37.8


User provided reference genes

Program Settings