Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 3.3e-30 134.4 69 100.0
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 3.6e-29 131.0 69 97.1
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 3.4e-27 124.4 68 89.7
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 5.8e-27 123.6 68 88.2
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 5.8e-27 123.6 68 88.2
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 7.6e-27 123.2 68 88.2
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 7.6e-27 123.2 68 88.2
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 1.3e-26 122.5 67 89.6
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 1.7e-26 122.1 68 86.8
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 2.9e-26 121.3 68 86.8
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 4.9e-26 120.6 68 83.8
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 4.9e-26 120.6 68 83.8
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 8.4e-26 119.8 68 85.3
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 8.4e-26 119.8 68 83.8
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 1.4e-25 119.0 68 82.4
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.4e-25 119.0 68 83.8
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 1.9e-25 118.6 68 83.8
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 2.4e-25 118.2 68 80.9
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 3.2e-25 117.9 68 80.9
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 3.2e-25 117.9 68 83.8
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 4.1e-25 117.5 68 82.4
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 4.1e-25 117.5 68 83.8
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 4.1e-25 117.5 68 80.9
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 4.1e-25 117.5 68 82.4
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 4.1e-25 117.5 68 82.4
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 5.4e-25 117.1 68 80.9
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 5.4e-25 117.1 68 80.9
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 5.4e-25 117.1 68 80.9
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 5.4e-25 117.1 68 80.9
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 7.1e-25 116.7 68 82.4
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 7.1e-25 116.7 68 80.9
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 7.1e-25 116.7 68 82.4
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 7.1e-25 116.7 68 82.4
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 9.2e-25 116.3 68 82.4
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 9.2e-25 116.3 68 80.9
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 9.2e-25 116.3 68 79.4
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 9.2e-25 116.3 68 80.9
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 9.2e-25 116.3 68 79.4
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 1.2e-24 115.9 68 82.4
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 1.6e-24 115.5 68 80.9
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 1.6e-24 115.5 68 79.4
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 1.6e-24 115.5 68 80.9
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 2.1e-24 115.2 68 79.4
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 2.1e-24 115.2 68 79.4
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 2.1e-24 115.2 68 79.4
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 2.7e-24 114.8 68 79.4
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 2.7e-24 114.8 68 80.9
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 2.7e-24 114.8 68 80.9
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 4.6e-24 114.0 68 79.4
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 6.0e-24 113.6 67 80.6
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 6.0e-24 113.6 68 80.9
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 6.0e-24 113.6 68 79.4
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 7.8e-24 113.2 68 79.4
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 7.8e-24 113.2 68 79.4
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 7.8e-24 113.2 68 77.9
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 7.8e-24 113.2 68 77.9
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 7.8e-24 113.2 68 79.4
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 1.0e-23 112.8 68 76.5
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 1.0e-23 112.8 68 77.9
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 1.0e-23 112.8 68 79.4
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 1.0e-23 112.8 68 79.4
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 1.3e-23 112.5 68 77.9
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 1.3e-23 112.5 68 77.9
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 1.7e-23 112.1 68 79.4
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 1.7e-23 112.1 68 77.9
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 1.7e-23 112.1 68 77.9
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 1.7e-23 112.1 68 79.4
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 1.7e-23 112.1 68 79.4
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 1.7e-23 112.1 68 76.5
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 3.9e-23 110.9 68 75.0
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 5.1e-23 110.5 68 76.5
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 6.6e-23 110.2 68 77.9
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 8.6e-23 109.8 69 76.8
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 1.1e-22 109.4 87 67.8
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 1.1e-22 109.4 87 67.8
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 1.1e-22 109.4 68 76.5
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 1.1e-22 109.4 63 81.0
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 1.1e-22 109.4 68 75.0
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 1.1e-22 109.4 68 76.5
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 1.5e-22 109.0 68 76.5
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.5e-22 109.0 68 75.0
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 2.5e-22 108.2 69 78.3
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 2.5e-22 108.2 69 75.4
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 2.5e-22 108.2 68 75.0
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 3.3e-22 107.8 68 73.5
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 3.3e-22 107.8 68 73.5
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 4.3e-22 107.5 68 75.0
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 7.3e-22 106.7 64 75.0
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 7.3e-22 106.7 68 72.1
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 9.6e-22 106.3 68 76.5
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.2e-21 105.9 67 73.1
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 2.8e-21 104.8 68 72.1
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 2.8e-21 104.8 68 72.1
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 2.8e-21 104.8 68 72.1
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 3.6e-21 104.4 68 72.1
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 3.6e-21 104.4 68 72.1
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 3.6e-21 104.4 68 72.1
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 2.4e-20 101.7 63 76.2
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 4.0e-20 100.9 68 70.6
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 5.2e-20 100.5 68 75.0
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 5.2e-20 100.5 71 69.0
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 6.9e-20 100.1 69 73.9
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 8.9e-20 99.8 98 56.1
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 1.5e-19 99.0 69 69.6
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 3.4e-19 97.8 70 67.1
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 4.4e-19 97.4 72 66.7
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 4.4e-19 97.4 68 69.1
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 8.4e-18 93.2 68 66.2
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 1.4e-17 92.4 68 61.8
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 5.4e-17 90.5 67 65.7
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 9.3e-17 89.7 70 62.9
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 9.3e-17 89.7 70 62.9
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 2.7e-16 88.2 48 83.3
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 4.6e-16 87.4 71 62.0
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 1.3e-15 85.9 70 60.0
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 3.9e-15 84.3 69 62.3
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 1.1e-14 82.8 48 89.6
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 1.9e-14 82.0 43 83.7
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 9.6e-14 79.7 47 80.9
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 1.6e-13 79.0 68 55.9
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 1.2e-11 72.8 49 67.3
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 1.9e-09 65.5 68 51.5
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 4.2e-09 64.3 61 55.7
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 4.2e-09 64.3 68 50.0
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 5.4e-09 63.9 47 63.8
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 3.5e-08 61.2 67 47.8
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 7.9e-08 60.1 50 60.0
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 1.8e-07 58.9 73 43.8


User provided reference genes

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