Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38691H Brassica oleracea HOM05D005563 ORTHO05D006667 2.2e-257 891.7 431 100.0
C06p35680 Brassica napus HOM05D005563 ORTHO05D006667 6.2e-252 873.6 431 98.8
BcaC08g45784 Brassica carinata HOM05D005563 ORTHO05D006667 6.6e-246 853.6 431 97.2
BraA07t30715Z Brassica rapa HOM05D005563 ORTHO05D006667 2.3e-230 802.0 434 90.6
A07p30780 Brassica napus HOM05D005563 ORTHO05D006667 2.2e-225 785.4 434 89.4
BcaB03g15600 Brassica carinata HOM05D005563 ORTHO05D006667 3.8e-217 758.1 419 89.3
Sp5g26490 Schrenkiella parvula HOM05D005563 ORTHO05D006667 1.7e-209 732.6 433 84.3
BcaB03g14889 Brassica carinata HOM05D005563 ORTHO05D006667 1.1e-203 713.4 432 81.2
Thhalv10018623m.g Eutrema salsugineum HOM05D005563 ORTHO05D006667 3.8e-193 678.3 429 79.3
CARHR064610 Cardamine hirsuta HOM05D005563 ORTHO05D006667 5.0e-193 677.9 410 81.7
AL2G30920 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 1.5e-186 656.4 414 79.7
AL1G12770 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 4.7e-183 644.8 414 78.5
AT5G24670 Arabidopsis thaliana HOM05D005563 ORTHO05D006667 1.8e-182 642.9 414 77.5
Carub.0002s1819 Capsella rubella HOM05D005563 ORTHO05D006667 1.2e-178 630.2 414 76.1
Carub.0004s0662 Capsella rubella HOM05D005563 ORTHO05D006667 1.2e-178 630.2 408 77.2
Aa31LG4G9220 Aethionema arabicum HOM05D005563 ORTHO05D006667 1.2e-162 577.0 427 69.1
THA.LOC104825030 Tarenaya hassleriana HOM05D005563 ORTHO05D006667 1.7e-153 546.6 434 63.6
BcaB03g14888 Brassica carinata HOM05D005563 ORTHO05D006667 9.8e-149 530.8 376 72.3
Prupe.8G002700 Prunus persica HOM05D005563 ORTHO05D006667 1.6e-122 443.7 419 55.6
Thecc.05G149300 Theobroma cacao HOM05D005563 ORTHO05D006667 6.6e-121 438.3 415 55.4
RcHm_v2.0_Chr6g0249561 Rosa chinensis HOM05D005563 ORTHO05D006667 1.6e-119 433.7 412 55.8
FvH4_2g00270 Fragaria vesca HOM05D005563 ORTHO05D006667 4.8e-119 432.2 422 55.9
Ciclev10020232m.g Citrus clementina HOM05D005563 ORTHO05D006667 1.2e-117 427.6 411 54.0
Potri.013G094800 Populus trichocarpa HOM05D005563 ORTHO05D006667 1.2e-117 427.6 420 56.0
Dinv22054 Davidia involucrata HOM05D005563 ORTHO05D006667 2.0e-117 426.8 416 55.0
QL09p001227 Quercus lobata HOM05D005563 ORTHO05D006667 4.4e-117 425.6 418 55.3
CiPaw.04G008700 Carya illinoinensis HOM05D005563 ORTHO05D006667 7.6e-117 424.9 429 54.1
Actinidia29363 Actinidia chinensis HOM05D005563 ORTHO05D006667 1.7e-116 423.7 414 54.6
Nn5g27214 Nelumbo nucifera HOM05D005563 ORTHO05D006667 2.2e-116 423.3 432 53.7
Cfa007306 Carpinus fangiana HOM05D005563 ORTHO05D006667 7.1e-115 418.3 423 53.4
Lj3g0011209 Lotus japonicus HOM05D005563 ORTHO05D006667 7.1e-115 418.3 413 54.7
Lalb_Chr24g0393341 Lupinus albus HOM05D005563 ORTHO05D006667 7.1e-115 418.3 424 52.8
GSVIVG01037139001 Vitis vinifera HOM05D005563 ORTHO05D006667 9.3e-115 417.9 416 54.1
Glyma.13G312100 Glycine max HOM05D005563 ORTHO05D006667 1.2e-114 417.5 412 55.6
Duzib177G0343 Durio zibethinus HOM05D005563 ORTHO05D006667 1.6e-114 417.2 409 53.8
FAN24G3564 Fragaria x ananassa HOM05D005563 ORTHO05D006667 2.1e-114 416.8 435 53.1
Sabra13G0080900 Salix brachista HOM05D005563 ORTHO05D006667 7.8e-114 414.8 423 54.1
CSS0040007 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 3.0e-113 412.9 411 53.5
arahy.Tifrunner.gnm1.ann1.QV839S Arachis hypogaea HOM05D005563 ORTHO05D006667 5.1e-113 412.1 414 53.6
VMungo1080G1448 Vigna mungo HOM05D005563 ORTHO05D006667 5.1e-113 412.1 416 56.0
BolC6t39597H Brassica oleracea HOM05D005563 ORTHO05D006667 8.7e-113 411.4 314 67.5
PGR044G0823 Punica granatum HOM05D005563 ORTHO05D006667 1.1e-112 411.0 416 52.9
CSS0002080 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 2.5e-112 409.8 411 53.0
MD10G1001500 Malus domestica HOM05D005563 ORTHO05D006667 5.6e-112 408.7 422 53.6
Phvul.005G118600 Phaseolus vulgaris HOM05D005563 ORTHO05D006667 9.6e-112 407.9 411 54.0
TPR.G23443 Trifolium pratense HOM05D005563 ORTHO05D006667 1.3e-111 407.5 432 52.3
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 1.6e-111 407.1 411 54.3
TAR628G0232 Trochodendron aralioides HOM05D005563 ORTHO05D006667 1.6e-111 407.1 414 52.2
Gorai.009G262600 Gossypium raimondii HOM05D005563 ORTHO05D006667 8.1e-111 404.8 422 52.6
Rhsim01G0058900 Rhododendron simsii HOM05D005563 ORTHO05D006667 1.1e-110 404.4 416 53.1
CANSAT64G1925 Cannabis sativa HOM05D005563 ORTHO05D006667 3.1e-110 402.9 423 53.2
Medtr8g103020 Medicago truncatula HOM05D005563 ORTHO05D006667 3.1e-110 402.9 421 52.7
Rhsim01G0059200 Rhododendron simsii HOM05D005563 ORTHO05D006667 3.1e-110 402.9 435 51.3
Atru.chr13.2584 Acer truncatum HOM05D005563 ORTHO05D006667 2.6e-109 399.8 420 52.1
CAN.G587.23 Capsicum annuum HOM05D005563 ORTHO05D006667 3.4e-109 399.4 404 52.5
vmacro07741 Vaccinium macrocarpon HOM05D005563 ORTHO05D006667 5.8e-109 398.7 422 53.8
DCAR_010113 Daucus carota HOM05D005563 ORTHO05D006667 1.3e-108 397.5 422 52.4
Oeu019017.1 Olea europaea HOM05D005563 ORTHO05D006667 2.2e-108 396.7 415 53.3
ClCG11G000440 Citrullus lanatus HOM05D005563 ORTHO05D006667 1.1e-107 394.4 419 52.0
DCAR_001180 Daucus carota HOM05D005563 ORTHO05D006667 4.2e-107 392.5 413 51.1
Aqoxy1G00244 Aquilegia oxysepala HOM05D005563 ORTHO05D006667 7.1e-107 391.7 411 51.1
Cc02_g22680 Coffea canephora HOM05D005563 ORTHO05D006667 1.6e-106 390.6 417 51.8
Oeu009445.1 Olea europaea HOM05D005563 ORTHO05D006667 4.6e-106 389.0 414 51.2
Solyc03g026100.1 Solanum lycopersicum HOM05D005563 ORTHO05D006667 4.6e-106 389.0 408 51.7
Psat7g014680 Pisum sativum HOM05D005563 ORTHO05D006667 6.0e-106 388.7 438 49.8
CAN.G769.9 Capsicum annuum HOM05D005563 ORTHO05D006667 1.3e-105 387.5 404 51.5
Hund26934 Selenicereus undatus HOM05D005563 ORTHO05D006667 1.9e-104 383.6 417 50.1
Nitab4.5_0006591g0020 Nicotiana tabacum HOM05D005563 ORTHO05D006667 2.5e-104 383.3 415 51.1
Eucgr.G00337 Eucalyptus grandis HOM05D005563 ORTHO05D006667 7.4e-104 381.7 414 50.5
Sopen03g004940 Solanum pennellii HOM05D005563 ORTHO05D006667 7.4e-104 381.7 404 52.2
CsaV3_6G042510 Cucumis sativus L. HOM05D005563 ORTHO05D006667 9.6e-104 381.3 418 51.2
PGSC0003DMG400014277 Solanum tuberosum HOM05D005563 ORTHO05D006667 1.3e-103 380.9 409 51.3
Migut.G00338 Erythranthe guttata HOM05D005563 ORTHO05D006667 2.1e-103 380.2 415 49.9
Haze_14007 Corylus avellana HOM05D005563 ORTHO05D006667 8.1e-103 378.3 530 42.8
DCAR_027509 Daucus carota HOM05D005563 ORTHO05D006667 8.1e-103 378.3 411 52.3
PSO761G0451 Papaver somniferum HOM05D005563 ORTHO05D006667 5.3e-102 375.6 418 48.6
Lsat_1_v5_gn_4_170241 Lactuca sativa HOM05D005563 ORTHO05D006667 2.6e-101 373.2 410 51.2
SGA_v2.0_scaffold277G46672 Striga asiatica HOM05D005563 ORTHO05D006667 7.6e-101 371.7 406 52.0
PSO170G2533 Papaver somniferum HOM05D005563 ORTHO05D006667 6.5e-100 368.6 413 49.9
MBI14_g08074_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 1.1e-99 367.9 405 51.1
PSO017G5640 Papaver somniferum HOM05D005563 ORTHO05D006667 3.0e-97 359.8 415 47.5
PSO407G0243 Papaver somniferum HOM05D005563 ORTHO05D006667 1.9e-96 357.1 412 48.3
Manes.18G108800 Manihot esculenta HOM05D005563 ORTHO05D006667 1.3e-95 354.4 353 54.1
HanXRQChr15g0488461 Helianthus annuus HOM05D005563 ORTHO05D006667 9.0e-94 348.2 342 53.8
arahy.Tifrunner.gnm1.ann1.NB4SND Arachis hypogaea HOM05D005563 ORTHO05D006667 2.2e-92 343.6 435 46.9
TAR633G2728 Trochodendron aralioides HOM05D005563 ORTHO05D006667 5.5e-91 339.0 355 50.4
Nitab4.5_0001489g0080 Nicotiana tabacum HOM05D005563 ORTHO05D006667 1.8e-89 334.0 370 49.5
Sed0012109 Sechium edule HOM05D005563 ORTHO05D006667 2.3e-89 333.6 332 56.9
TWI18G0160 Tripterygium wilfordii HOM05D005563 ORTHO05D006667 1.9e-88 330.5 426 47.4
ATR0580G344 Amborella trichopoda HOM05D005563 ORTHO05D006667 2.5e-88 330.1 424 46.0
AUR62023340 Chenopodium quinoa HOM05D005563 ORTHO05D006667 1.2e-85 321.2 424 46.7
Nitab4.5_0000079g0140 Nicotiana tabacum HOM05D005563 ORTHO05D006667 1.1e-83 314.7 406 45.3
Peaxi162Scf00078g01133 Petunia axillaris HOM05D005563 ORTHO05D006667 1.1e-83 314.7 348 49.4
AUR62013814 Chenopodium quinoa HOM05D005563 ORTHO05D006667 4.3e-80 302.8 512 39.8
unitig_32.g10817 Utricularia gibba HOM05D005563 ORTHO05D006667 7.4e-80 302.0 388 46.1
MELO3C022956.2 Cucumis melo HOM05D005563 ORTHO05D006667 4.8e-79 299.3 375 48.0
Gohir.A05G248000 Gossypium hirsutum HOM05D005563 ORTHO05D006667 2.6e-72 276.9 323 48.0
TPR.G11352 Trifolium pratense HOM05D005563 ORTHO05D006667 7.4e-72 275.4 319 49.5
Gohir.D05G248801 Gossypium hirsutum HOM05D005563 ORTHO05D006667 2.4e-70 270.4 329 48.0
AUR62037990 Chenopodium quinoa HOM05D005563 ORTHO05D006667 7.7e-69 265.4 309 47.9
FAN19G1429 Fragaria x ananassa HOM05D005563 ORTHO05D006667 7.2e-67 258.8 438 41.1
Sc19g0006900 Simmondsia chinensis HOM05D005563 ORTHO05D006667 5.2e-65 252.7 344 42.7
Eucgr.C03620 Eucalyptus grandis HOM05D005563 ORTHO05D006667 2.2e-63 247.3 303 44.9
EL10Ac1g00691 Beta vulgaris HOM05D005563 ORTHO05D006667 8.2e-63 245.4 352 42.6
COL.COLO4_34067 Corchorus olitorius HOM05D005563 ORTHO05D006667 6.5e-60 235.7 321 44.9
C06p46160 Brassica napus HOM05D005563 ORTHO05D006667 2.2e-55 220.7 192 65.6
AagrBONN_evm.TU.Sc2ySwM_344.1216 Anthoceros agrestis HOM05D005563 ORTHO05D006667 6.5e-52 209.1 472 33.5
Mapoly0019s0003 Marchantia polymorpha HOM05D005563 ORTHO05D006667 2.5e-51 207.2 426 33.8
SMO356G0078 Selaginella moellendorffii HOM05D005563 ORTHO05D006667 5.5e-51 206.1 411 33.1
Pp3c5_5220 Physcomitrium patens HOM05D005563 ORTHO05D006667 1.2e-50 204.9 400 35.2
Cpa.g.sc249.8 Carica papaya HOM05D005563 ORTHO05D006667 2.1e-50 204.1 164 61.0
CDE04G2046 Ceratophyllum demersum HOM05D005563 ORTHO05D006667 1.8e-49 201.1 260 44.6
Ca_17321_v3 Cicer arietinum L. HOM05D005563 ORTHO05D006667 2.3e-49 200.7 325 43.1
HPP92_009712 Vanilla planifolia HOM05D005563 ORTHO05D006667 2.0e-48 197.6 254 47.6
SHI17431 Sapria himalayana HOM05D005563 ORTHO05D006667 9.8e-48 195.3 275 43.3
Zm00001eb088860 Zea mays HOM05D005563 ORTHO05D006667 8.3e-47 192.2 274 43.1
MBI14_g20078_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 5.8e-32 142.9 82 78.0
TPR.G11340 Trifolium pratense HOM05D005563 ORTHO05D006667 5.8e-32 142.9 80 81.2
Eucgr.C03478 Eucalyptus grandis HOM05D005563 ORTHO05D006667 9.8e-32 142.1 232 41.8
MBI08_g10505_MAGBIO Magnolia biondii HOM05D000152 ORTHO05D006667 1.3e-31 141.7 85 74.1
MBI13_g08747_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 2.9e-31 140.6 95 67.4
MBI15_g36474_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 1.1e-30 138.7 99 65.7
Actinidia03534 Actinidia chinensis HOM05D005563 ORTHO05D006667 1.7e-28 131.3 239 36.4
Eucgr.C03640 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.1e-27 128.6 73 79.5
MCO11G544 Micromonas commoda HOM05D005563 ORTHO05D006667 4.3e-27 126.7 366 27.3
CBR_g50242 Chara braunii HOM05D005563 ORTHO05D006667 1.4e-22 111.7 589 23.4
Thecc.10G189600 Theobroma cacao HOM05D005563 ORTHO05D006667 2.7e-21 107.5 122 50.8
Eucgr.L00998 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.9e-19 101.3 212 34.4
CBR_g8323 Chara braunii HOM05D005563 ORTHO05D006667 1.6e-18 98.2 161 36.6
FAN20G2324 Fragaria x ananassa HOM05D005563 ORTHO05D006667 2.1e-18 97.8 50 84.0
Cre10.g439200 Chlamydomonas reinhardtii HOM05D005563 ORTHO05D006667 1.2e-16 92.0 169 34.9
DCAR_001179 Daucus carota HOM05D005563 ORTHO05D006667 1.1e-11 75.5 180 33.9
PRCOL_00003298 Prasinoderma coloniale HOM05D005563 ORTHO05D006667 1.9e-11 74.7 222 30.2
SHI17433 Sapria himalayana HOM05D005563 ORTHO05D006667 1.5e-08 65.1 56 53.6
Eucgr.C03636 Eucalyptus grandis HOM05D005563 ORTHO05D006667 2.6e-08 64.3 179 33.5
Actinidia28221 Actinidia chinensis HOM05D005563 ORTHO05D006667 1.9e-06 58.2 69 50.7


User provided reference genes

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