Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45751 Brassica carinata HOM05D007473 ORTHO05D009459 1.6e-49 199.1 101 100.0
BolC6t38636H Brassica oleracea HOM05D007473 ORTHO05D009459 1.6e-49 199.1 101 100.0
A07p30540 Brassica napus HOM05D007473 ORTHO05D009459 1.8e-48 195.7 101 98.0
BraA07t30689Z Brassica rapa HOM05D007473 ORTHO05D009459 3.3e-47 191.4 101 96.0
C06p35300 Brassica napus HOM05D007473 ORTHO05D009459 7.4e-47 190.3 98 98.0
Sp5g26890 Schrenkiella parvula HOM05D007473 ORTHO05D009459 1.8e-45 185.7 105 92.4
SpUn0020_0080 Schrenkiella parvula HOM05D007473 ORTHO05D009459 1.8e-45 185.7 105 92.4
Thhalv10019351m.g Eutrema salsugineum HOM05D007473 ORTHO05D009459 2.0e-44 182.2 105 89.5
BcaC08g46619 Brassica carinata HOM05D007473 ORTHO05D009459 5.5e-42 174.1 106 87.7
A07p38010 Brassica napus HOM05D007473 ORTHO05D009459 7.1e-42 173.7 106 87.7
BolC6t39645H Brassica oleracea HOM05D007473 ORTHO05D009459 3.5e-41 171.4 106 86.8
BraA07t31366Z Brassica rapa HOM05D007473 ORTHO05D009459 3.5e-41 171.4 106 86.8
AL2G31450 Arabidopsis lyrata HOM05D007473 ORTHO05D009459 1.3e-40 169.5 105 87.6
AT1G71865 Arabidopsis thaliana HOM05D007473 ORTHO05D009459 1.8e-40 169.1 105 87.6
Carub.0002s1863 Capsella rubella HOM05D007473 ORTHO05D009459 5.7e-39 164.1 105 84.8
CARHR290890 Cardamine hirsuta HOM05D007473 ORTHO05D009459 5.3e-37 157.5 105 81.9
BcaB03g15623 Brassica carinata HOM05D007473 ORTHO05D009459 1.7e-35 152.5 103 83.5
Aa31LG4G8770 Aethionema arabicum HOM05D007473 ORTHO05D009459 5.1e-32 141.0 99 78.8
Atru.chr13.1869 Acer truncatum HOM05D007473 ORTHO05D009459 2.9e-27 125.2 103 67.0
Cpa.g.sc66.113 Carica papaya HOM05D007473 ORTHO05D009459 2.5e-26 122.1 104 66.3
BcaC08g46617 Brassica carinata HOM05D007473 ORTHO05D009459 3.2e-26 121.7 107 67.3
Thecc.08G199100 Theobroma cacao HOM05D007473 ORTHO05D009459 7.2e-26 120.6 103 66.0
Duzib116G0725 Durio zibethinus HOM05D007473 ORTHO05D009459 9.4e-26 120.2 103 66.0
QL09p016421 Quercus lobata HOM05D007473 ORTHO05D009459 1.6e-25 119.4 100 64.0
Ah.05g172820 Amaranthus hybridus HOM05D007473 ORTHO05D009459 3.6e-25 118.2 104 63.5
Potri.013G116100 Populus trichocarpa HOM05D007473 ORTHO05D009459 3.6e-25 118.2 98 67.3
QL02p034734 Quercus lobata HOM05D007473 ORTHO05D009459 4.6e-25 117.9 100 63.0
TWI59G1410 Tripterygium wilfordii HOM05D007473 ORTHO05D009459 1.4e-24 116.3 103 62.1
Gohir.A09G117600 Gossypium hirsutum HOM05D007473 ORTHO05D009459 2.3e-24 115.5 103 62.1
Gohir.D09G114400 Gossypium hirsutum HOM05D007473 ORTHO05D009459 2.3e-24 115.5 103 62.1
Gorai.006G132300 Gossypium raimondii HOM05D007473 ORTHO05D009459 2.3e-24 115.5 103 62.1
Hma1.2p1_0510F.1_g168850 Hydrangea macrophylla HOM05D007473 ORTHO05D009459 3.0e-24 115.2 103 60.2
AUR62004677 Chenopodium quinoa HOM05D000623 ORTHO05D007511 6.7e-24 114.0 104 64.4
Duzib211G0408 Durio zibethinus HOM05D007473 ORTHO05D009459 6.7e-24 114.0 103 63.1
Cfa018218 Carpinus fangiana HOM05D007473 ORTHO05D009459 1.1e-23 113.2 103 60.2
Ciclev10003143m.g Citrus clementina HOM05D007473 ORTHO05D009459 1.1e-23 113.2 103 63.1
AUR62023594 Chenopodium quinoa HOM05D007473 ORTHO05D009459 1.5e-23 112.8 104 63.5
Sc23g0001050 Simmondsia chinensis HOM05D007473 ORTHO05D009459 1.5e-23 112.8 103 63.1
COL.COLO4_36790 Corchorus olitorius HOM05D007473 ORTHO05D009459 2.0e-23 112.5 103 62.1
Sabra19G0097100 Salix brachista HOM05D007473 ORTHO05D009459 5.7e-23 110.9 104 62.5
Aqoxy5G02488 Aquilegia oxysepala HOM05D007473 ORTHO05D009459 1.3e-22 109.8 103 61.2
Manes.18G098100 Manihot esculenta HOM05D007473 ORTHO05D009459 1.7e-22 109.4 103 63.1
Nitab4.5_0004159g0050 Nicotiana tabacum HOM05D007473 ORTHO05D009459 2.2e-22 109.0 103 59.2
GSVIVG01036821001 Vitis vinifera HOM05D007473 ORTHO05D009459 2.2e-22 109.0 103 59.2
Manes.02G188900 Manihot esculenta HOM05D007473 ORTHO05D009459 2.8e-22 108.6 103 61.2
Nitab4.5_0000051g0010 Nicotiana tabacum HOM05D007473 ORTHO05D009459 2.8e-22 108.6 103 59.2
THA.LOC104800103 Tarenaya hassleriana HOM05D007473 ORTHO05D009459 2.8e-22 108.6 102 63.7
Potri.019G086700 Populus trichocarpa HOM05D007473 ORTHO05D009459 3.7e-22 108.2 104 60.6
Glyma.02G075700 Glycine max HOM05D007473 ORTHO05D009459 4.8e-22 107.8 107 57.9
Oeu054499.1 Olea europaea HOM05D007473 ORTHO05D009459 4.8e-22 107.8 103 59.2
VMungo0464G1647 Vigna mungo HOM05D007473 ORTHO05D009459 6.3e-22 107.5 104 59.6
Glyma.16G157600 Glycine max HOM05D007473 ORTHO05D009459 8.2e-22 107.1 107 57.9
Haze_17885 Corylus avellana HOM05D007473 ORTHO05D009459 1.4e-21 106.3 100 59.0
SalBow7G0569 Salvia bowleyana HOM05D007473 ORTHO05D009459 1.4e-21 106.3 103 60.2
CsaV3_7G024330 Cucumis sativus L. HOM05D007473 ORTHO05D009459 3.1e-21 105.1 100 59.0
Phvul.004G085900 Phaseolus vulgaris HOM05D007473 ORTHO05D009459 3.1e-21 105.1 104 58.7
MSTRG.25424 Avicennia marina HOM05D007473 ORTHO05D009459 4.1e-21 104.8 103 59.2
Prupe.8G051200 Prunus persica HOM05D007473 ORTHO05D009459 4.1e-21 104.8 101 61.4
Aa31LG7G6620 Aethionema arabicum HOM05D007473 ORTHO05D009459 6.9e-21 104.0 83 71.1
Cc00_g18070 Coffea canephora HOM05D007473 ORTHO05D009459 6.9e-21 104.0 103 58.3
Nn1g08531 Nelumbo nucifera HOM05D007473 ORTHO05D009459 6.9e-21 104.0 103 58.3
SGA_v2.0_scaffold25G11079 Striga asiatica HOM05D007473 ORTHO05D009459 9.1e-21 103.6 98 61.2
ClCG09G010330 Citrullus lanatus HOM05D007473 ORTHO05D009459 1.2e-20 103.2 100 58.0
TAR628G1168 Trochodendron aralioides HOM05D007473 ORTHO05D009459 1.2e-20 103.2 104 61.5
Migut.C01206 Erythranthe guttata HOM05D007473 ORTHO05D009459 1.5e-20 102.8 99 59.6
PGSC0003DMG400030214 Solanum tuberosum HOM05D007473 ORTHO05D009459 2.0e-20 102.4 103 57.3
MELO3C023649.2 Cucumis melo HOM05D007473 ORTHO05D009459 2.6e-20 102.1 100 57.0
Sed0021533 Sechium edule HOM05D007473 ORTHO05D009459 2.6e-20 102.1 100 57.0
CiPaw.15G006600 Carya illinoinensis HOM05D007473 ORTHO05D009459 5.9e-20 100.9 103 55.3
Solyc11g013850.2 Solanum lycopersicum HOM05D007473 ORTHO05D009459 7.7e-20 100.5 103 57.3
Sopen11g008770 Solanum pennellii HOM05D007473 ORTHO05D009459 7.7e-20 100.5 103 57.3
Lalb_Chr19g0129841 Lupinus albus HOM05D007473 ORTHO05D009459 3.8e-19 98.2 106 52.8
EL10Ac3g06462 Beta vulgaris HOM05D007473 ORTHO05D009459 5.0e-19 97.8 97 58.8
MD05G1038600 Malus domestica HOM05D007473 ORTHO05D009459 5.0e-19 97.8 100 58.0
Sabra13G0098400 Salix brachista HOM05D007473 ORTHO05D009459 5.0e-19 97.8 93 62.4
CANSAT25G2275 Cannabis sativa HOM05D007473 ORTHO05D009459 8.5e-19 97.1 103 54.4
Oeu017869.1 Olea europaea HOM05D007473 ORTHO05D009459 8.5e-19 97.1 103 58.3
Eucgr.F04148 Eucalyptus grandis HOM05D007473 ORTHO05D009459 1.1e-18 96.7 100 57.0
MD10G1044400 Malus domestica HOM05D007473 ORTHO05D009459 1.1e-18 96.7 100 61.0
TPR.G30581 Trifolium pratense HOM05D007473 ORTHO05D009459 1.1e-18 96.7 103 59.2
Lalb_Chr01g0009921 Lupinus albus HOM05D007473 ORTHO05D009459 1.9e-18 95.9 106 53.8
Medtr1g097080 Medicago truncatula HOM05D007473 ORTHO05D009459 2.5e-18 95.5 105 59.0
Lj5g0014701 Lotus japonicus HOM05D007473 ORTHO05D009459 3.2e-18 95.1 104 57.7
CSS0009978 Camellia sinensis var. sinensis HOM05D007473 ORTHO05D009459 4.2e-18 94.7 91 57.1
ATR0584G170 Amborella trichopoda HOM05D007473 ORTHO05D009459 4.7e-17 91.3 105 53.3
EL10Ac8g20095 Beta vulgaris HOM05D007473 ORTHO05D009459 6.1e-17 90.9 97 55.7
Os01g0871350 Oryza sativa ssp. japonica HOM05D007473 ORTHO05D009459 6.1e-17 90.9 100 56.0
Psat6g188360 Pisum sativum HOM05D007473 ORTHO05D009459 6.1e-17 90.9 103 56.3
PSO017G2761 Papaver somniferum HOM05D007473 ORTHO05D009459 1.4e-16 89.7 105 54.3
EL10Ac1g01496 Beta vulgaris HOM05D007473 ORTHO05D009459 2.3e-16 89.0 97 54.6
Peaxi162Scf00476g00621 Petunia axillaris HOM05D007473 ORTHO05D009459 3.9e-16 88.2 94 55.3
Zm00001eb289250 Zea mays HOM05D007473 ORTHO05D009459 5.7e-15 84.3 100 52.0
EL10Ac8g20080 Beta vulgaris HOM05D007473 ORTHO05D009459 7.0e-13 77.4 90 52.2
EL10Ac7g17167 Beta vulgaris HOM05D007473 ORTHO05D009459 1.6e-12 76.3 65 64.6
SEGI_38346 Sequoiadendron giganteum HOM05D007473 ORTHO05D009459 1.6e-12 76.3 106 49.1
EL10Ac8g20008 Beta vulgaris HOM05D007473 ORTHO05D009459 2.2e-11 72.4 65 63.1
Hund27069 Selenicereus undatus HOM05D007473 ORTHO05D009459 2.2e-11 72.4 86 52.3
Zm00001eb348670 Zea mays HOM05D007473 ORTHO05D009459 1.4e-08 63.2 88 48.9
EL10Ac4g08661 Beta vulgaris HOM05D007473 ORTHO05D009459 6.7e-08 60.8 52 61.5


User provided reference genes

Program Settings