Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 0.0e+00 1300.0 664 100.0
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 0.0e+00 1256.5 664 97.0
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1254.2 664 96.8
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 0.0e+00 1222.2 650 96.3
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1214.5 666 94.1
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 0.0e+00 1153.7 663 88.1
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 0.0e+00 1149.0 663 87.3
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 0.0e+00 1139.8 658 87.5
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1135.9 658 86.9
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 0.0e+00 1135.9 658 86.9
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1134.4 658 86.8
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 0.0e+00 1130.2 669 85.8
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 0.0e+00 1124.4 663 85.7
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 0.0e+00 1122.8 658 86.3
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 0.0e+00 1117.4 661 85.0
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 1.3e-304 1049.3 661 80.5
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 6.3e-296 1020.4 659 78.6
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 1.8e-250 869.4 643 68.1
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 2.9e-248 862.1 642 66.8
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 5.4e-247 857.8 642 66.2
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 1.3e-245 853.2 658 64.4
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 2.3e-245 852.4 642 65.7
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 2.3e-245 852.4 654 65.9
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 8.6e-245 850.5 661 65.2
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 1.9e-244 849.4 662 66.2
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 4.3e-244 848.2 649 65.5
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 9.5e-244 847.0 641 66.1
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 1.8e-242 842.8 660 64.1
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 5.2e-242 841.3 657 65.6
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 8.9e-242 840.5 657 65.6
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 5.8e-241 837.8 660 64.4
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 7.6e-241 837.4 647 64.9
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 1.1e-239 833.6 645 65.9
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 1.1e-239 833.6 649 65.2
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 3.2e-239 832.0 641 65.7
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 6.0e-238 827.8 663 63.8
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 1.0e-237 827.0 641 65.4
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 3.0e-237 825.5 654 64.2
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 7.3e-236 820.8 652 64.3
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 1.1e-234 817.0 660 63.5
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 1.4e-234 816.6 644 63.5
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 3.1e-234 815.5 641 63.5
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 4.0e-234 815.1 661 62.6
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 8.9e-234 813.9 643 64.5
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 1.5e-233 813.1 657 63.3
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 4.4e-233 811.6 643 63.9
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 4.4e-233 811.6 656 62.7
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 6.4e-232 807.7 641 64.9
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 8.4e-232 807.4 640 63.1
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 1.9e-231 806.2 642 64.3
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 2.4e-231 805.8 648 63.4
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 4.2e-231 805.1 640 63.6
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 4.2e-231 805.1 647 62.6
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 7.1e-231 804.3 641 64.6
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 7.1e-231 804.3 647 63.7
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 2.7e-230 802.4 640 63.3
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 7.8e-230 800.8 640 63.3
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 1.0e-229 800.4 658 62.9
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 9.6e-228 793.9 647 63.4
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 2.1e-227 792.7 647 62.8
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 2.1e-227 792.7 619 65.1
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 2.1e-227 792.7 644 63.8
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 5.3e-226 788.1 591 65.5
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 3.4e-225 785.4 655 60.9
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 6.4e-224 781.2 647 62.4
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 1.9e-223 779.6 646 61.8
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 1.9e-223 779.6 652 61.5
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 3.5e-222 775.4 647 61.5
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 6.0e-222 774.6 660 61.5
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 1.3e-221 773.5 654 60.9
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 2.5e-220 769.2 658 60.3
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 8.1e-219 764.2 667 59.4
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 2.4e-218 762.7 667 59.4
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 3.4e-217 758.8 655 59.5
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 2.9e-216 755.7 641 62.1
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 4.9e-216 755.0 652 60.6
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 5.4e-215 751.5 641 59.8
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 7.1e-215 751.1 641 59.8
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 1.6e-214 750.0 618 62.0
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 1.7e-208 729.9 654 59.5
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 1.2e-206 723.8 656 58.8
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 2.3e-205 719.5 650 58.6
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 1.1e-202 710.7 646 57.4
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 4.1e-202 708.8 651 57.5
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 3.2e-199 699.1 651 57.8
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 3.2e-199 699.1 660 56.5
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 4.2e-199 698.7 681 57.0
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 9.4e-191 671.0 556 61.5
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 3.0e-189 666.0 644 56.5
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 3.8e-184 649.0 525 63.0
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 2.3e-181 639.8 646 54.0
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 2.1e-174 616.7 562 56.2
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 4.4e-172 609.0 616 54.7
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 1.1e-170 604.4 676 51.2
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 3.8e-168 595.9 631 51.7
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 1.0e-165 587.8 651 53.5
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 2.4e-154 550.1 445 62.0
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 1.2e-145 521.2 635 46.5
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 4.3e-143 512.7 497 53.3
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 2.1e-142 510.4 646 44.0
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 2.6e-140 503.4 664 43.2
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 6.4e-139 498.8 628 43.9
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 2.4e-138 496.9 575 49.9
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 4.4e-132 476.1 648 44.4
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 3.8e-107 393.3 625 37.8
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 8.5e-75 285.8 339 49.3
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 2.2e-70 271.2 237 56.5
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 8.3e-46 189.5 280 43.2
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 2.0e-44 184.9 157 57.3
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 5.0e-43 180.3 122 73.0
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 3.0e-40 171.0 278 39.2
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 5.4e-37 160.2 107 72.9
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 3.5e-36 157.5 156 50.6
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 4.5e-36 157.1 107 72.0
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 5.9e-36 156.8 141 58.9
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 3.3e-34 151.0 140 60.0
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 4.3e-34 150.6 229 38.0
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 3.6e-33 147.5 141 53.2
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 3.0e-32 144.4 156 50.6
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 4.0e-32 144.1 131 55.0
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 4.9e-30 137.1 97 69.1
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 7.0e-29 133.3 160 46.2
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 7.8e-28 129.8 86 72.1
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.1e-24 119.4 86 65.1
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 1.2e-23 115.9 81 72.8
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 7.5e-23 113.2 80 71.2
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 9.2e-21 106.3 78 65.4
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 1.6e-20 105.5 99 52.5
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 1.8e-16 92.0 88 59.1
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 1.4e-13 82.4 96 47.9
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 6.0e-12 77.0 89 46.1
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 1.7e-11 75.5 54 70.4
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 3.3e-10 71.2 59 57.6
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 3.6e-09 67.8 562 20.3


User provided reference genes

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