Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38540H Brassica oleracea HOM05D005198 ORTHO05D006839 0.0e+00 1130.5 577 100.0
A07p29920 Brassica napus HOM05D005198 ORTHO05D006839 2.5e-285 984.9 541 94.8
BraA07t30630Z Brassica rapa HOM05D005198 ORTHO05D006839 4.1e-283 977.6 516 97.3
C06p34190 Brassica napus HOM05D005198 ORTHO05D006839 4.8e-276 954.1 568 88.6
Sp5g28150 Schrenkiella parvula HOM05D005198 ORTHO05D006839 6.5e-257 890.6 495 89.3
CARHR066180 Cardamine hirsuta HOM05D005198 ORTHO05D006839 3.2e-248 861.7 495 85.1
Thhalv10018413m.g Eutrema salsugineum HOM05D005198 ORTHO05D006839 3.2e-248 861.7 497 86.7
AT1G73180 Arabidopsis thaliana HOM05D005198 ORTHO05D006839 7.2e-248 860.5 495 84.6
BcaC08g45664 Brassica carinata HOM05D005198 ORTHO05D006839 2.3e-246 855.5 520 88.8
AL2G32950 Arabidopsis lyrata HOM05D005198 ORTHO05D006839 8.3e-244 847.0 495 83.8
Carub.0002s1997 Capsella rubella HOM05D005198 ORTHO05D006839 4.5e-242 841.3 517 83.2
Aa31LG4G3470 Aethionema arabicum HOM05D005198 ORTHO05D006839 3.6e-239 831.6 493 82.8
THA.LOC104813938 Tarenaya hassleriana HOM05D005198 ORTHO05D006839 1.7e-220 769.6 495 74.9
Ciclev10019752m.g Citrus clementina HOM05D005198 ORTHO05D006839 3.4e-205 718.8 493 70.8
Manes.04G036150 Manihot esculenta HOM05D005198 ORTHO05D006839 4.6e-202 708.4 497 69.2
Thecc.01G302200 Theobroma cacao HOM05D005198 ORTHO05D006839 7.8e-202 707.6 496 67.9
RcHm_v2.0_Chr2g0123631 Rosa chinensis HOM05D005198 ORTHO05D006839 1.1e-200 703.7 501 68.3
QL10p055731 Quercus lobata HOM05D005198 ORTHO05D006839 6.2e-199 698.0 482 69.3
PGR142G0872 Punica granatum HOM05D005198 ORTHO05D006839 1.4e-198 696.8 497 68.4
TWI63G1273 Tripterygium wilfordii HOM05D005198 ORTHO05D006839 1.8e-198 696.4 492 68.5
MD15G1424000 Malus domestica HOM05D005198 ORTHO05D006839 5.3e-198 694.9 496 69.0
Rhsim04G0106800 Rhododendron simsii HOM05D005198 ORTHO05D006839 5.8e-197 691.4 497 68.0
Potri.013G126300 Populus trichocarpa HOM05D005198 ORTHO05D006839 2.2e-196 689.5 494 67.6
Hma1.2p1_0150F.1_g066860 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 4.9e-196 688.3 495 68.3
Sabra13G0105600 Salix brachista HOM05D005198 ORTHO05D006839 4.9e-196 688.3 495 67.3
Actinidia28982 Actinidia chinensis HOM05D005198 ORTHO05D006839 1.4e-195 686.8 498 66.9
Gohir.A02G009975 Gossypium hirsutum HOM05D005198 ORTHO05D006839 3.2e-195 685.6 496 65.9
GSVIVG01038139001 Vitis vinifera HOM05D005198 ORTHO05D006839 7.9e-194 681.0 495 66.7
Prupe.1G207000 Prunus persica HOM05D005198 ORTHO05D006839 1.3e-193 680.2 497 67.6
Gohir.D02G010200 Gossypium hirsutum HOM05D005198 ORTHO05D006839 1.3e-191 673.7 496 64.7
Migut.G01222 Erythranthe guttata HOM05D005198 ORTHO05D006839 2.1e-191 672.9 476 67.2
Sed0009334 Sechium edule HOM05D005198 ORTHO05D006839 2.1e-191 672.9 500 65.4
Cc03_g14040 Coffea canephora HOM05D005198 ORTHO05D006839 2.8e-191 672.5 481 69.0
Gorai.005G012500 Gossypium raimondii HOM05D005198 ORTHO05D006839 2.8e-191 672.5 496 64.9
TAR365G0102 Trochodendron aralioides HOM05D005198 ORTHO05D006839 6.2e-191 671.4 497 67.8
Duzib151G0783 Durio zibethinus HOM05D005198 ORTHO05D006839 1.4e-190 670.2 496 64.9
Aqoxy2G02750 Aquilegia oxysepala HOM05D005198 ORTHO05D006839 1.8e-190 669.8 492 65.7
Oeu020813.1 Olea europaea HOM05D005198 ORTHO05D006839 2.4e-190 669.5 478 67.6
ClCG07G015220 Citrullus lanatus HOM05D005198 ORTHO05D006839 4.0e-190 668.7 496 66.5
FAN28G0627 Fragaria x ananassa HOM05D005198 ORTHO05D006839 5.3e-190 668.3 494 66.0
MELO3C017760.2 Cucumis melo HOM05D005198 ORTHO05D006839 9.0e-190 667.5 495 65.5
Eucgr.H00311 Eucalyptus grandis HOM05D005198 ORTHO05D006839 3.4e-189 665.6 480 65.8
Atru.BG.83.p Acer truncatum HOM05D005198 ORTHO05D006839 2.2e-188 662.9 472 68.0
Dinv07059 Davidia involucrata HOM05D005198 ORTHO05D006839 3.8e-188 662.1 477 68.1
SalBow3G0226 Salvia bowleyana HOM05D005198 ORTHO05D006839 6.4e-188 661.4 494 64.6
TPR.G23517 Trifolium pratense HOM05D005198 ORTHO05D006839 1.1e-187 660.6 479 65.3
VMungo0251G3269 Vigna mungo HOM05D005198 ORTHO05D006839 1.1e-187 660.6 498 65.5
Lalb_Chr09g0328121 Lupinus albus HOM05D005198 ORTHO05D006839 7.1e-187 657.9 479 66.0
Lj1g0021010 Lotus japonicus HOM05D005198 ORTHO05D006839 9.3e-187 657.5 496 63.9
Ah.13g073540 Amaranthus hybridus HOM05D005198 ORTHO05D006839 1.2e-186 657.1 498 64.1
Glyma.02G137200 Glycine max HOM05D005198 ORTHO05D006839 1.2e-186 657.1 479 65.8
ECA232G1195 Erigeron canadensis HOM05D005198 ORTHO05D006839 2.7e-186 656.0 500 64.6
Solyc08g014060.4 Solanum lycopersicum HOM05D005198 ORTHO05D006839 2.7e-186 656.0 503 63.2
Glyma.07G208200 Glycine max HOM05D005198 ORTHO05D006839 1.8e-185 653.3 499 63.9
Medtr4g087280 Medicago truncatula HOM05D005198 ORTHO05D006839 3.9e-185 652.1 495 64.0
arahy.Tifrunner.gnm1.ann1.A4X0ZB Arachis hypogaea HOM05D005198 ORTHO05D006839 1.5e-184 650.2 498 64.7
arahy.Tifrunner.gnm1.ann1.Q28JUU Arachis hypogaea HOM05D005198 ORTHO05D006839 1.9e-184 649.8 495 63.8
PSO732G0749 Papaver somniferum HOM05D005198 ORTHO05D006839 1.9e-184 649.8 502 63.1
PSO675G4502 Papaver somniferum HOM05D005198 ORTHO05D006839 4.3e-184 648.7 502 62.5
COL.COLO4_23329 Corchorus olitorius HOM05D005198 ORTHO05D006839 1.3e-183 647.1 494 63.0
Phvul.003G296400 Phaseolus vulgaris HOM05D005198 ORTHO05D006839 1.3e-183 647.1 497 64.0
Psat7g121400 Pisum sativum HOM05D005198 ORTHO05D006839 1.6e-183 646.7 496 63.9
CANSAT11G2028 Cannabis sativa HOM05D005198 ORTHO05D006839 2.1e-183 646.4 501 64.7
FAN26G1320 Fragaria x ananassa HOM05D005198 ORTHO05D006839 2.1e-183 646.4 557 59.2
Sopen08g004940 Solanum pennellii HOM05D005198 ORTHO05D006839 3.7e-183 645.6 507 62.3
Haze_01365 Corylus avellana HOM05D005198 ORTHO05D006839 1.8e-182 643.3 536 61.0
CsaV3_4G002810 Cucumis sativus L. HOM05D005198 ORTHO05D006839 2.4e-182 642.9 553 59.7
AUR62002390 Chenopodium quinoa HOM05D005198 ORTHO05D006839 5.3e-182 641.7 513 61.6
Lj4A14T50 Lonicera japonica HOM05D005198 ORTHO05D006839 1.5e-181 640.2 445 67.2
CAN.G1411.3 Capsicum annuum HOM05D005198 ORTHO05D006839 6.5e-180 634.8 478 63.8
Lsat_1_v5_gn_9_61481 Lactuca sativa HOM05D005198 ORTHO05D006839 2.7e-178 629.4 489 63.4
Cpa.g.sc9.361 Carica papaya HOM05D005198 ORTHO05D006839 4.1e-174 615.5 496 62.9
AUR62023798 Chenopodium quinoa HOM05D005198 ORTHO05D006839 4.5e-173 612.1 506 60.5
HanXRQChr15g0483441 Helianthus annuus HOM05D005198 ORTHO05D006839 8.5e-172 607.8 444 66.7
vmacro09048 Vaccinium macrocarpon HOM05D005198 ORTHO05D006839 2.2e-167 593.2 704 47.4
ATR0733G245 Amborella trichopoda HOM05D005198 ORTHO05D006839 4.8e-167 592.0 479 60.5
Hund03196 Selenicereus undatus HOM05D005198 ORTHO05D006839 4.8e-167 592.0 500 59.4
Hma1.2p1_0150F.1_g066870 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 3.4e-165 585.9 382 71.5
FvH4_1g25500 Fragaria vesca HOM05D005198 ORTHO05D006839 4.5e-165 585.5 494 61.1
Zm00001eb246620 Zea mays HOM05D005198 ORTHO05D006839 1.7e-164 583.6 498 56.8
SGA_v2.0_scaffold12G06184 Striga asiatica HOM05D005198 ORTHO05D006839 4.7e-162 575.5 494 60.9
Peaxi162Scf00075g01544 Petunia axillaris HOM05D005198 ORTHO05D006839 5.7e-160 568.5 484 59.1
Nitab4.5_0011921g0010 Nicotiana tabacum HOM05D005198 ORTHO05D006839 6.3e-159 565.1 478 58.8
FAN23G1744 Fragaria x ananassa HOM05D005198 ORTHO05D006839 1.1e-158 564.3 498 59.4
Nitab4.5_0000122g0140 Nicotiana tabacum HOM05D005198 ORTHO05D006839 3.4e-157 559.3 429 62.7
CDE04G2667 Ceratophyllum demersum HOM05D005198 ORTHO05D006839 5.9e-157 558.5 495 57.8
CSS0046337 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 1.0e-156 557.8 508 58.7
Eucgr.L01724 Eucalyptus grandis HOM05D005198 ORTHO05D006839 1.7e-156 557.0 437 62.5
FAN19G2119 Fragaria x ananassa HOM05D005198 ORTHO05D006839 7.2e-155 551.6 540 55.4
Dinv33201 Davidia involucrata HOM05D005198 ORTHO05D006839 9.4e-155 551.2 373 72.1
CiPaw.02G100600 Carya illinoinensis HOM05D005198 ORTHO05D006839 2.3e-153 546.6 375 69.3
Nn1g09646 Nelumbo nucifera HOM05D005198 ORTHO05D006839 3.0e-145 519.6 368 68.2
Sc25g0002780 Simmondsia chinensis HOM05D005198 ORTHO05D006839 2.8e-143 513.1 344 69.2
Mapoly0011s0080 Marchantia polymorpha HOM05D005198 ORTHO05D006839 2.9e-140 503.1 477 52.0
Pp3c6_14240 Physcomitrium patens HOM05D005198 ORTHO05D006839 3.2e-139 499.6 510 51.0
Lalb_Chr16g0384461 Lupinus albus HOM05D005198 ORTHO05D006839 2.3e-132 476.9 326 69.0
CBR_g53754 Chara braunii HOM05D005198 ORTHO05D006839 3.5e-125 453.0 489 46.8
unitig_92.g28215 Utricularia gibba HOM05D005198 ORTHO05D006839 2.3e-124 450.3 314 67.2
CSS0050366 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 6.1e-122 442.2 396 58.6
SMO145G0177 Selaginella moellendorffii HOM05D005198 ORTHO05D006839 8.0e-122 441.8 491 45.4
Ca_25383_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 9.8e-120 434.9 257 77.4
SEGI_32957 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 9.5e-115 418.3 370 54.6
EL10Ac3g06083 Beta vulgaris HOM05D005198 ORTHO05D006839 6.0e-109 399.1 289 65.7
MBI11_g23940_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 1.0e-108 398.3 299 64.5
DCAR_027527 Daucus carota HOM05D005198 ORTHO05D006839 2.3e-108 397.1 297 63.3
Atru.chr4.1402 Acer truncatum HOM05D005198 ORTHO05D006839 1.2e-101 374.8 258 68.6
Eucgr.H00310 Eucalyptus grandis HOM05D005198 ORTHO05D006839 5.1e-100 369.4 472 44.3
SHI30329 Sapria himalayana HOM05D005198 ORTHO05D000023 5.8e-88 329.3 304 55.6
PRCOL_00000684 Prasinoderma coloniale HOM05D005198 ORTHO05D006839 1.3e-82 311.6 439 38.7
MCO01G167 Micromonas commoda HOM05D005198 ORTHO05D006839 6.9e-81 305.8 464 37.9
AagrBONN_evm.TU.Sc2ySwM_228.1363 Anthoceros agrestis HOM05D005198 ORTHO05D006839 7.4e-75 285.8 291 48.8
Cre08.g375900 Chlamydomonas reinhardtii HOM05D005198 ORTHO05D006839 1.7e-71 274.6 454 35.0
Hma1.2p1_0554F.1_g177930 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 1.7e-71 274.6 314 49.4
Lj3g0007177 Lotus japonicus HOM05D005198 ORTHO05D006839 2.2e-63 247.7 205 59.5
Lj6g0012253 Lotus japonicus HOM05D005198 ORTHO05D006839 2.2e-63 247.7 205 59.5
BolC3t18675H Brassica oleracea HOM05D005198 ORTHO05D006839 2.2e-47 194.5 101 94.1
Nitab4.5_0009616g0020 Nicotiana tabacum HOM05D005198 ORTHO05D006839 4.4e-43 180.3 114 73.7
SHI30330 Sapria himalayana HOM05D000105 ORTHO05D000023 2.9e-39 167.5 201 45.8
CAN.G256.23 Capsicum annuum HOM05D005198 ORTHO05D006839 5.0e-39 166.8 169 51.5
Lalb_Chr16g0384471 Lupinus albus HOM05D005198 ORTHO05D006839 3.6e-37 160.6 142 56.3
unitig_92.g28214 Utricularia gibba HOM05D005198 ORTHO05D006839 3.9e-36 157.1 157 56.7
Ca_18641_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 2.0e-35 154.8 127 59.8
MBI11_g23941_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 6.3e-34 149.8 146 54.1
DCAR_027526 Daucus carota HOM05D005198 ORTHO05D006839 3.1e-33 147.5 180 50.0
MBI14_g40932_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 3.6e-29 134.0 120 57.5
Cfa017363 Carpinus fangiana HOM05D002708 ORTHO05D003516 5.0e-23 113.6 508 23.0
Haze_20811 Corylus avellana HOM05D002708 ORTHO05D003516 3.2e-22 110.9 448 23.2
arahy.Tifrunner.gnm1.ann1.9YLT9A Arachis hypogaea HOM05D002708 ORTHO05D003516 4.2e-22 110.5 487 22.6
arahy.Tifrunner.gnm1.ann1.V30RJW Arachis hypogaea HOM05D002708 ORTHO05D003516 5.5e-22 110.2 487 22.6
Manes.03G006600 Manihot esculenta HOM05D002708 ORTHO05D003516 5.5e-22 110.2 485 21.9
Lj1g0003503 Lotus japonicus HOM05D002708 ORTHO05D003516 1.2e-21 109.0 486 21.8
FAN05G3540 Fragaria x ananassa HOM05D002708 ORTHO05D003516 3.6e-21 107.5 413 23.7
FAN09G1379 Fragaria x ananassa HOM05D002708 ORTHO05D003516 3.6e-21 107.5 415 24.6
PGR031G2892 Punica granatum HOM05D002708 ORTHO05D003516 3.6e-21 107.5 420 23.3
TPR.G21430 Trifolium pratense HOM05D002708 ORTHO05D003516 4.7e-21 107.1 444 22.7
Manes.16G132500 Manihot esculenta HOM05D002708 ORTHO05D003516 6.1e-21 106.7 488 21.5
FvH4_6g00800 Fragaria vesca HOM05D002708 ORTHO05D003516 8.0e-21 106.3 413 23.5
Lsat_1_v5_gn_8_82921 Lactuca sativa HOM05D002708 ORTHO05D003516 1.0e-20 105.9 474 22.8
RcHm_v2.0_Chr3g0448281 Rosa chinensis HOM05D002708 ORTHO05D003516 1.4e-20 105.5 417 23.0
Sabra06G0209700 Salix brachista HOM05D002708 ORTHO05D003516 8.8e-20 102.8 488 21.9
SEGI_27162 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 2.6e-19 101.3 128 40.6
ATR0693G135 Amborella trichopoda HOM05D002708 ORTHO05D003516 7.5e-19 99.8 318 26.4
PSO782G1674 Papaver somniferum HOM05D002708 ORTHO05D003516 7.5e-19 99.8 513 23.4
MBI11_g30564_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 9.8e-19 99.4 60 75.0
PSO017G2439 Papaver somniferum HOM05D002708 ORTHO05D003516 9.8e-19 99.4 513 23.4
PSO063G5514 Papaver somniferum HOM05D002708 ORTHO05D003516 9.8e-19 99.4 512 22.7
CSS0015120 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 1.3e-18 99.0 112 54.5
FAN02G3944 Fragaria x ananassa HOM05D002708 ORTHO05D003516 6.3e-18 96.7 429 22.6
SGA_v2.0_scaffold130G34334 Striga asiatica HOM05D005198 ORTHO05D006839 1.1e-17 95.9 125 42.4
Oeu037396.1 Olea europaea HOM05D002708 ORTHO05D003516 1.8e-17 95.1 485 20.6
Psat1g217120 Pisum sativum HOM05D005198 ORTHO05D006839 2.4e-17 94.7 66 65.2
ATR0794G148 Amborella trichopoda HOM05D002708 ORTHO05D003516 1.2e-16 92.4 384 23.4
Cfa013020 Carpinus fangiana HOM05D002708 ORTHO05D003516 1.2e-16 92.4 491 21.4
MBI03_g14783_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 4.5e-16 90.5 59 71.2
MCO03G077 Micromonas commoda HOM05D002708 ORTHO05D003516 5.9e-16 90.1 448 23.0
Cre03.g190100 Chlamydomonas reinhardtii HOM05D002708 ORTHO05D003516 6.6e-15 86.7 403 21.6
Sabra18G0018700 Salix brachista HOM05D002708 ORTHO05D003516 1.1e-14 85.9 475 21.7
CANSAT25G3904 Cannabis sativa HOM05D002708 ORTHO05D003516 2.5e-14 84.7 487 20.3
Medtr5g091610 Medicago truncatula HOM05D001363 ORTHO05D006839 5.5e-14 83.6 61 60.7
FAN14G3709 Fragaria x ananassa HOM05D002708 ORTHO05D003516 2.1e-13 81.6 329 22.8
MBI07_g28641_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 3.6e-13 80.9 56 67.9
Migut.B01470 Erythranthe guttata HOM05D002708 ORTHO05D003516 6.1e-13 80.1 485 19.8
Lsat_1_v5_gn_5_150841 Lactuca sativa HOM05D005198 ORTHO05D004031 6.1e-13 80.1 44 79.5
TPR.G40117 Trifolium pratense HOM05D002708 ORTHO05D003516 8.0e-13 79.7 208 26.0
PRCOL_00000791 Prasinoderma coloniale HOM05D002708 ORTHO05D003516 6.8e-12 76.6 407 21.1
Glyma.03G132500 Glycine max HOM05D005198 ORTHO05D006839 1.2e-11 75.9 74 50.0
SGA_v2.0_scaffold649G53360 Striga asiatica HOM05D005198 ORTHO05D006839 7.5e-11 73.2 47 68.1
FAN14G0317 Fragaria x ananassa HOM05D002708 ORTHO05D003516 1.1e-09 69.3 137 28.5
BraA02t06891Z Brassica rapa HOM05D005198 ORTHO05D040308 2.4e-09 68.2 59 67.8
Os02g0606100 Oryza sativa ssp. japonica HOM05D005198 ORTHO05D006839 2.4e-09 68.2 93 41.9
BolC2t09126H Brassica oleracea HOM05D005198 ORTHO05D042013 7.0e-09 66.6 120 40.0
C02p30710 Brassica napus HOM05D005198 ORTHO05D042013 1.6e-08 65.5 120 39.2
Dinv33202 Davidia involucrata HOM05D005198 ORTHO05D006839 7.8e-08 63.2 49 63.3
COL.COLO4_29149 Corchorus olitorius HOM05D005198 ORTHO05D006839 1.3e-07 62.4 79 48.1
A02p18520 Brassica napus HOM05D005198 ORTHO05D040308 8.6e-07 59.7 75 52.0


User provided reference genes

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