Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38528H Brassica oleracea HOM05D002209 ORTHO05D033214 4.3e-77 291.2 141 100.0
BraA10t43197Z Brassica rapa HOM05D002209 ORTHO05D033214 6.7e-46 187.6 99 88.9
A10p11050 Brassica napus HOM05D002209 ORTHO05D033214 7.4e-29 131.0 90 76.7
BcaC05g28661 Brassica carinata HOM05D002209 ORTHO05D007926 1.0e-14 84.0 46 87.0
C05p47920 Brassica napus HOM05D002209 ORTHO05D007926 1.0e-14 84.0 46 87.0
BolC5t33504H Brassica oleracea HOM05D002209 ORTHO05D007926 1.0e-14 84.0 46 87.0
Thhalv10021375m.g Eutrema salsugineum HOM05D002209 ORTHO05D007926 2.3e-14 82.8 46 84.8
Sp3g16280 Schrenkiella parvula HOM05D002209 ORTHO05D007926 3.9e-14 82.0 46 84.8
BcaB04g20790 Brassica carinata HOM05D002209 ORTHO05D007926 5.2e-14 81.6 46 82.6
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 5.2e-14 81.6 46 82.6
A05p31590 Brassica napus HOM05D002209 ORTHO05D007926 5.2e-14 81.6 46 84.8
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 5.2e-14 81.6 46 82.6
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 5.2e-14 81.6 46 82.6
BraA05t21994Z Brassica rapa HOM05D002209 ORTHO05D007926 5.2e-14 81.6 46 84.8
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 8.8e-14 80.9 46 82.6
CARHR093490 Cardamine hirsuta HOM05D002209 ORTHO05D007926 8.8e-14 80.9 46 82.6
BcaC09g48772 Brassica carinata HOM05D002209 ORTHO05D007926 1.1e-13 80.5 46 80.4
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 1.1e-13 80.5 46 80.4
AT3G18165 Arabidopsis thaliana HOM05D002209 ORTHO05D007926 1.5e-13 80.1 46 80.4
Carub.0003s1789 Capsella rubella HOM05D002209 ORTHO05D007926 2.6e-13 79.3 46 80.4
AL3G31340 Arabidopsis lyrata HOM05D002209 ORTHO05D007926 3.3e-13 79.0 46 78.3
THA.LOC104820370 Tarenaya hassleriana HOM05D002209 ORTHO05D007926 1.1e-11 73.9 46 71.7
Manes.14G168500 Manihot esculenta HOM05D002209 ORTHO05D007926 2.2e-09 66.2 46 60.9
MD00G1160500 Malus domestica HOM05D002209 ORTHO05D007926 3.8e-09 65.5 46 63.0
Ciclev10009263m.g Citrus clementina HOM05D002209 ORTHO05D007926 5.0e-09 65.1 47 59.6
PGR083G0394 Punica granatum HOM05D002209 ORTHO05D007926 5.0e-09 65.1 46 60.9
Lj4g0023570 Lotus japonicus HOM05D002209 ORTHO05D007926 6.5e-09 64.7 46 63.0
Nitab4.5_0001158g0030 Nicotiana tabacum HOM05D002209 ORTHO05D007926 6.5e-09 64.7 46 63.0
Nitab4.5_0012369g0010 Nicotiana tabacum HOM05D002209 ORTHO05D007926 6.5e-09 64.7 46 63.0
Peaxi162Scf00683g10026 Petunia axillaris HOM05D002209 ORTHO05D007926 6.5e-09 64.7 46 63.0
SGA_v2.0_scaffold21G09613 Striga asiatica HOM05D002209 ORTHO05D007926 8.5e-09 64.3 46 63.0
CAN.G1129.32 Capsicum annuum HOM05D002209 ORTHO05D007926 1.1e-08 63.9 46 63.0
Glyma.08G051400 Glycine max HOM05D002209 ORTHO05D007926 1.1e-08 63.9 46 60.9
MD14G1233600 Malus domestica HOM05D002209 ORTHO05D007926 1.5e-08 63.5 50 56.0
Nitab4.5_0000150g0080 Nicotiana tabacum HOM05D002209 ORTHO05D007926 1.5e-08 63.5 46 63.0
Migut.L01913 Erythranthe guttata HOM05D002209 ORTHO05D007926 1.9e-08 63.2 62 51.6
Phvul.002G327300 Phaseolus vulgaris HOM05D002209 ORTHO05D007926 1.9e-08 63.2 47 59.6
SalBow5G1692 Salvia bowleyana HOM05D002209 ORTHO05D007926 1.9e-08 63.2 64 50.0
MSTRG.22939 Avicennia marina HOM05D002209 ORTHO05D007926 2.5e-08 62.8 45 62.2
Ca_14628_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 2.5e-08 62.8 46 58.7
Prupe.5G229800 Prunus persica HOM05D002209 ORTHO05D007926 2.5e-08 62.8 46 58.7
Thecc.06G020700 Theobroma cacao HOM05D002209 ORTHO05D007926 2.5e-08 62.8 46 58.7
Duzib160G0876 Durio zibethinus HOM05D002209 ORTHO05D007926 3.2e-08 62.4 46 58.7
PGSC0003DMG400005659 Solanum tuberosum HOM05D002209 ORTHO05D007926 3.2e-08 62.4 46 60.9
unitig_27.g24963 Utricularia gibba HOM05D002209 ORTHO05D007926 3.2e-08 62.4 68 47.1
Eucgr.B00853 Eucalyptus grandis HOM05D002209 ORTHO05D007926 4.2e-08 62.0 53 56.6
Oeu014368.1 Olea europaea HOM05D002209 ORTHO05D007926 4.2e-08 62.0 46 58.7
RcHm_v2.0_Chr7g0178821 Rosa chinensis HOM05D002209 ORTHO05D007926 4.2e-08 62.0 46 60.9
Solyc03g119010.3 Solanum lycopersicum HOM05D002209 ORTHO05D007926 4.2e-08 62.0 51 54.9
Atru.chr9.948 Acer truncatum HOM05D002209 ORTHO05D007926 5.5e-08 61.6 46 56.5
CSS0012934 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 5.5e-08 61.6 46 56.5
CSS0018698 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 5.5e-08 61.6 46 56.5
CANSAT80G1708 Cannabis sativa HOM05D002209 ORTHO05D007926 5.5e-08 61.6 46 60.9
CANSAT80G2078 Cannabis sativa HOM05D002209 ORTHO05D007926 5.5e-08 61.6 46 60.9
Glyma.05G243600 Glycine max HOM05D002209 ORTHO05D007926 7.2e-08 61.2 46 58.7
Psat7g003960 Pisum sativum HOM05D002209 ORTHO05D007926 7.2e-08 61.2 46 56.5
Potri.015G041800 Populus trichocarpa HOM05D002209 ORTHO05D007926 7.2e-08 61.2 46 56.5
Sc10g0009340 Simmondsia chinensis HOM05D002209 ORTHO05D007926 7.2e-08 61.2 46 54.3
Sopen00g010550 Solanum pennellii HOM05D002209 ORTHO05D007926 7.2e-08 61.2 46 58.7
Cfa019698 Carpinus fangiana HOM05D002209 ORTHO05D007926 1.2e-07 60.5 46 54.3
Rhsim12G0139900 Rhododendron simsii HOM05D002209 ORTHO05D007926 1.2e-07 60.5 46 56.5
TPR.G12761 Trifolium pratense HOM05D002209 ORTHO05D007926 1.2e-07 60.5 46 56.5
TWI81G0293 Tripterygium wilfordii HOM05D002209 ORTHO05D007926 1.2e-07 60.5 46 56.5
FvH4_5g17030 Fragaria vesca HOM05D002209 ORTHO05D007926 1.6e-07 60.1 46 58.7
FAN08G0602 Fragaria x ananassa HOM05D002209 ORTHO05D007926 1.6e-07 60.1 46 58.7
FAN13G0553 Fragaria x ananassa HOM05D002209 ORTHO05D007926 1.6e-07 60.1 46 58.7
Lalb_Chr09g0330531 Lupinus albus HOM05D002209 ORTHO05D007926 1.6e-07 60.1 46 56.5
Nn2g14536 Nelumbo nucifera HOM05D002209 ORTHO05D007926 2.1e-07 59.7 46 56.5
Sabra15G0055300 Salix brachista HOM05D002209 ORTHO05D007926 2.1e-07 59.7 45 57.8
GSVIVG01008385001 Vitis vinifera HOM05D002209 ORTHO05D007926 2.1e-07 59.7 46 54.3
Aqoxy3G00431 Aquilegia oxysepala HOM05D002209 ORTHO05D007926 2.7e-07 59.3 46 54.3
Lsat_1_v5_gn_3_114081 Lactuca sativa HOM05D002209 ORTHO05D007926 2.7e-07 59.3 46 54.3
PSO017G1461 Papaver somniferum HOM05D002209 ORTHO05D007926 2.7e-07 59.3 46 58.7
PSO478G0876 Papaver somniferum HOM05D002209 ORTHO05D007926 2.7e-07 59.3 46 58.7
Actinidia18911 Actinidia chinensis HOM05D002209 ORTHO05D007926 3.6e-07 58.9 44 54.5
ClCG04G010780 Citrullus lanatus HOM05D002209 ORTHO05D007926 3.6e-07 58.9 46 58.7
Hma1.2p1_1257F.1_g270850 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 3.6e-07 58.9 46 56.5
Medtr8g106740 Medicago truncatula HOM05D002209 ORTHO05D007926 3.6e-07 58.9 46 54.3
arahy.Tifrunner.gnm1.ann1.IWL1UH Arachis hypogaea HOM05D002209 ORTHO05D007926 4.7e-07 58.5 46 60.9
CiPaw.15G139100 Carya illinoinensis HOM05D002209 ORTHO05D007926 4.7e-07 58.5 46 52.2
ECA240G0871 Erigeron canadensis HOM05D002209 ORTHO05D007926 4.7e-07 58.5 47 53.2
Gohir.D06G123100 Gossypium hirsutum HOM05D002209 ORTHO05D007926 4.7e-07 58.5 46 54.3
Sabra15G0061600 Salix brachista HOM05D002209 ORTHO05D007926 4.7e-07 58.5 45 55.6
vmacro16426 Vaccinium macrocarpon HOM05D002209 ORTHO05D007926 4.7e-07 58.5 46 54.3
Cc04_g06640 Coffea canephora HOM05D002209 ORTHO05D007926 6.1e-07 58.2 46 52.2
MELO3C002120.2 Cucumis melo HOM05D002209 ORTHO05D007926 6.1e-07 58.2 46 58.7
CsaV3_1G007020 Cucumis sativus L. HOM05D002209 ORTHO05D007926 6.1e-07 58.2 46 58.7
Actinidia35109 Actinidia chinensis HOM05D002209 ORTHO05D007926 8.0e-07 57.8 44 54.5
arahy.Tifrunner.gnm1.ann1.A2QZNW Arachis hypogaea HOM05D002209 ORTHO05D007926 8.0e-07 57.8 46 58.7
arahy.Tifrunner.gnm1.ann1.X5TZ4V Arachis hypogaea HOM05D002209 ORTHO05D007926 8.0e-07 57.8 46 58.7
FAN18G2854 Fragaria x ananassa HOM05D002209 ORTHO05D007926 8.0e-07 57.8 46 56.5
Gorai.010G143200 Gossypium raimondii HOM05D002209 ORTHO05D007926 8.0e-07 57.8 46 54.3
TAR622G1089 Trochodendron aralioides HOM05D002209 ORTHO05D007926 8.0e-07 57.8 46 54.3
arahy.Tifrunner.gnm1.ann1.7LX2IS Arachis hypogaea HOM05D002209 ORTHO05D007926 1.0e-06 57.4 46 60.9
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 1.0e-06 57.4 46 54.3
Ca_17308_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 1.0e-06 57.4 46 54.3
QL10p027511 Quercus lobata HOM05D002209 ORTHO05D007926 1.4e-06 57.0 46 50.0
VMungo0251G3506 Vigna mungo HOM05D002209 ORTHO05D007926 1.8e-06 56.6 46 54.3
MBI13_g00575_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D007926 2.3e-06 56.2 46 52.2
C05p44850 Brassica napus HOM05D002209 ORTHO05D007926 5.2e-06 55.1 29 86.2
BolC5t33212H Brassica oleracea HOM05D002209 ORTHO05D007926 5.2e-06 55.1 29 86.2
Gohir.A06G114800 Gossypium hirsutum HOM05D002209 ORTHO05D007926 5.2e-06 55.1 46 54.3
Sed0021446 Sechium edule HOM05D002209 ORTHO05D007926 5.2e-06 55.1 46 52.2
AUR62029953 Chenopodium quinoa HOM05D002209 ORTHO05D007926 8.8e-06 54.3 45 48.9
AUR62033751 Chenopodium quinoa HOM05D002209 ORTHO05D007926 8.8e-06 54.3 45 48.9
HanXRQChr03g0090991 Helianthus annuus HOM05D002209 ORTHO05D007926 8.8e-06 54.3 44 52.3


User provided reference genes

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