Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38463H Brassica oleracea HOM05D006637 ORTHO05D001736 3.3e-148 528.5 292 100.0
BcaC08g45599 Brassica carinata HOM05D006637 ORTHO05D001736 2.0e-145 519.2 292 97.3
BraA07t30588Z Brassica rapa HOM05D006637 ORTHO05D001736 2.4e-138 495.7 293 94.2
C06p33490 Brassica napus HOM05D000311 ORTHO05D000183 2.0e-121 439.5 246 100.0
A07p29500 Brassica napus HOM05D000311 ORTHO05D000183 1.7e-115 419.9 247 95.5
Sp5g29400 Schrenkiella parvula HOM05D006637 ORTHO05D001736 2.0e-108 396.4 327 74.9
AL2G34100 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 2.5e-95 352.8 327 67.6
CARHR067480 Cardamine hirsuta HOM05D006637 ORTHO05D001736 2.3e-93 346.3 318 69.5
BcaB05g24843 Brassica carinata HOM05D006637 ORTHO05D001736 4.0e-93 345.5 304 70.1
Carub.0002s2101 Capsella rubella HOM05D006637 ORTHO05D001736 9.8e-92 340.9 324 64.5
A02p19190 Brassica napus HOM05D006637 ORTHO05D001736 3.7e-91 339.0 300 68.0
BcaC03g15494 Brassica carinata HOM05D006637 ORTHO05D001736 5.4e-90 335.1 300 67.3
C02p31780 Brassica napus HOM05D006637 ORTHO05D001736 1.5e-87 327.0 300 68.0
BraA02t06967Z Brassica rapa HOM05D006637 ORTHO05D001736 2.5e-87 326.2 297 66.3
BolC2t09205H Brassica oleracea HOM05D006637 ORTHO05D001736 4.7e-86 322.0 303 67.0
AT1G74220 Arabidopsis thaliana HOM05D006637 ORTHO05D001736 1.0e-85 320.9 323 63.5
Thhalv10018880m.g Eutrema salsugineum HOM05D006637 ORTHO05D001736 2.2e-83 313.2 324 64.5
BraA07t31550Z Brassica rapa HOM05D006637 ORTHO05D001736 3.1e-82 309.3 309 64.4
A07p40060 Brassica napus HOM05D006637 ORTHO05D001736 9.2e-82 307.8 306 66.0
C06p48410 Brassica napus HOM05D006637 ORTHO05D001736 2.9e-75 286.2 314 63.4
BcaC08g46854 Brassica carinata HOM05D006637 ORTHO05D001736 1.2e-73 280.8 248 71.0
BcaC03g15490 Brassica carinata HOM05D006637 ORTHO05D001736 5.8e-68 261.9 276 62.0
BolC6t39870H Brassica oleracea HOM05D006637 ORTHO05D001736 3.0e-64 249.6 313 58.8
Aa31LG4G4510 Aethionema arabicum HOM05D006637 ORTHO05D001736 2.6e-60 236.5 248 60.5
THA.LOC104808038 Tarenaya hassleriana HOM05D006637 ORTHO05D001736 3.8e-43 179.5 269 46.8
BcaB05g24564 Brassica carinata HOM05D006637 ORTHO05D001736 6.0e-33 145.6 141 66.7
Cpa.g.sc10.158 Carica papaya HOM05D006637 ORTHO05D001736 1.1e-18 98.2 253 36.0
MD14G1212300 Malus domestica HOM05D006637 ORTHO05D001736 5.5e-18 95.9 273 35.5
Prupe.5G205600 Prunus persica HOM05D006637 ORTHO05D001736 7.1e-18 95.5 266 35.7
Manes.06G084300 Manihot esculenta HOM05D006637 ORTHO05D001736 2.1e-17 94.0 277 35.0
Lalb_Chr13g0302841 Lupinus albus HOM05D006637 ORTHO05D001736 3.5e-17 93.2 259 36.3
Duzib068G0311 Durio zibethinus HOM05D006637 ORTHO05D001736 3.9e-16 89.7 264 35.2
Glyma.05G020700 Glycine max HOM05D006637 ORTHO05D001736 3.9e-16 89.7 241 34.0
Potri.015G057200 Populus trichocarpa HOM05D006637 ORTHO05D001736 6.7e-16 89.0 271 35.1
Sed0008450 Sechium edule HOM05D006637 ORTHO05D001736 1.5e-15 87.8 249 37.3
Atru.chr9.567 Acer truncatum HOM05D006637 ORTHO05D001736 1.9e-15 87.4 252 35.7
Phvul.003G184500 Phaseolus vulgaris HOM05D006637 ORTHO05D001736 2.5e-15 87.0 263 33.1
Psat4g068920 Pisum sativum HOM05D006637 ORTHO05D001736 2.5e-15 87.0 251 34.7
MELO3C017227.2 Cucumis melo HOM05D006637 ORTHO05D001736 9.7e-15 85.1 295 33.6
CsaV3_1G002960 Cucumis sativus L. HOM05D006637 ORTHO05D001736 1.3e-14 84.7 294 33.7
TPR.G2044 Trifolium pratense HOM05D006637 ORTHO05D001736 1.3e-14 84.7 246 34.1
VMungo1215G2016 Vigna mungo HOM05D006637 ORTHO05D001736 1.3e-14 84.7 238 36.6
Thecc.03G102400 Theobroma cacao HOM05D006637 ORTHO05D001736 1.6e-14 84.3 251 35.1
Ca_21771_v3 Cicer arietinum L. HOM05D006637 ORTHO05D001736 2.8e-14 83.6 263 32.7
Phvul.009G201900 Phaseolus vulgaris HOM05D006637 ORTHO05D001736 3.7e-14 83.2 265 33.2
MD06G1225400 Malus domestica HOM05D006637 ORTHO05D001736 6.3e-14 82.4 263 35.7
TWI15G0882 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 8.2e-14 82.0 300 32.7
Ciclev10023416m.g Citrus clementina HOM05D006637 ORTHO05D001736 1.1e-13 81.6 261 36.8
Potri.012G061700 Populus trichocarpa HOM05D006637 ORTHO05D001736 2.4e-13 80.5 274 32.8
Duzib205G1030 Durio zibethinus HOM05D006637 ORTHO05D001736 6.9e-13 79.0 253 34.8
TAR371G0370 Trochodendron aralioides HOM05D006637 ORTHO05D001736 1.5e-12 77.8 246 32.1
Glyma.06G204000 Glycine max HOM05D006637 ORTHO05D001736 2.0e-12 77.4 190 38.4
Manes.14G086000 Manihot esculenta HOM05D006637 ORTHO05D001736 2.0e-12 77.4 248 33.5
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 2.0e-12 77.4 209 37.3
Cfa019342 Carpinus fangiana HOM05D000824 ORTHO05D003555 2.6e-12 77.0 180 38.9
TWI81G0402 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 3.4e-12 76.6 289 33.2
ClCG06G015610 Citrullus lanatus HOM05D006637 ORTHO05D001736 4.5e-12 76.3 197 35.5
Lj4g0016086 Lotus japonicus HOM05D006637 ORTHO05D001736 4.5e-12 76.3 242 33.9
Lalb_Chr07g0178311 Lupinus albus HOM05D006637 ORTHO05D001736 4.5e-12 76.3 249 32.9
Cc00_g04710 Coffea canephora HOM05D006637 ORTHO05D001736 5.9e-12 75.9 78 56.4
FAN13G0480 Fragaria x ananassa HOM05D006637 ORTHO05D001736 1.7e-11 74.3 282 31.2
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 1.7e-11 74.3 210 37.6
FvH4_5g13780 Fragaria vesca HOM05D006637 ORTHO05D001736 2.2e-11 73.9 278 33.8
FAN08G0389 Fragaria x ananassa HOM05D006637 ORTHO05D001736 2.2e-11 73.9 289 34.3
FAN18G2922 Fragaria x ananassa HOM05D006637 ORTHO05D001736 2.2e-11 73.9 278 33.8
GSVIVG01007850001 Vitis vinifera HOM05D006637 ORTHO05D001736 2.9e-11 73.6 293 31.4
Glyma.17G078600 Glycine max HOM05D006637 ORTHO05D001736 3.8e-11 73.2 184 38.6
Actinidia04823 Actinidia chinensis HOM05D006637 ORTHO05D001736 5.0e-11 72.8 145 42.1
Nn3g17457 Nelumbo nucifera HOM05D003787 ORTHO05D001736 5.0e-11 72.8 247 31.2
Gohir.A12G182900 Gossypium hirsutum HOM05D006637 ORTHO05D001736 8.5e-11 72.0 226 33.6
QL10p019649 Quercus lobata HOM05D006637 ORTHO05D001736 8.5e-11 72.0 214 35.5
Gorai.008G199400 Gossypium raimondii HOM05D006637 ORTHO05D001736 1.4e-10 71.2 228 34.6
MBI19_g14007_MAGBIO Magnolia biondii HOM05D006637 ORTHO05D001736 1.4e-10 71.2 245 31.0
GSVIVG01012223001 Vitis vinifera HOM05D003787 ORTHO05D001736 1.4e-10 71.2 82 53.7
Aqoxy3G03685 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 3.2e-10 70.1 149 40.9
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 3.2e-10 70.1 288 31.9
Haze_07733 Corylus avellana HOM05D006637 ORTHO05D001736 4.2e-10 69.7 134 41.0
Glyma.04G162200 Glycine max HOM05D006637 ORTHO05D001736 4.2e-10 69.7 256 31.2
Medtr4g109570 Medicago truncatula HOM05D006637 ORTHO05D001736 5.5e-10 69.3 220 32.3
Gohir.D12G186000 Gossypium hirsutum HOM05D006637 ORTHO05D001736 7.2e-10 68.9 228 34.2
TPR.G12192 Trifolium pratense HOM05D006637 ORTHO05D001736 7.2e-10 68.9 261 30.3
PGR083G0945 Punica granatum HOM05D006637 ORTHO05D001736 9.3e-10 68.6 280 31.1
RcHm_v2.0_Chr7g0183151 Rosa chinensis HOM05D006637 ORTHO05D001736 9.3e-10 68.6 266 31.6
Ciclev10033684m.g Citrus clementina HOM05D003787 ORTHO05D001736 1.2e-09 68.2 92 47.8
Rhsim12G0148600 Rhododendron simsii HOM05D006637 ORTHO05D001736 1.2e-09 68.2 196 36.7
CSS0036361 Camellia sinensis var. sinensis HOM05D006637 ORTHO05D001736 1.6e-09 67.8 178 33.7
CiPaw.11G054000 Carya illinoinensis HOM05D006637 ORTHO05D001736 2.1e-09 67.4 251 34.7
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 3.6e-09 66.6 260 30.8
Sed0021860 Sechium edule HOM05D006637 ORTHO05D001736 3.6e-09 66.6 293 30.7
AT2G03630 Arabidopsis thaliana HOM05D003787 ORTHO05D001736 4.6e-09 66.2 241 32.4
Haze_11903 Corylus avellana HOM05D003787 ORTHO05D001736 4.6e-09 66.2 82 50.0
Potri.008G096300 Populus trichocarpa HOM05D003787 ORTHO05D001736 4.6e-09 66.2 95 43.2
Sabra12G0044700 Salix brachista HOM05D006637 ORTHO05D001736 4.6e-09 66.2 217 33.6
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 6.1e-09 65.9 158 36.7
ATR0177G031 Amborella trichopoda HOM05D003787 ORTHO05D001736 7.9e-09 65.5 96 46.9
DCAR_011559 Daucus carota HOM05D006637 ORTHO05D001736 7.9e-09 65.5 122 40.2
AUR62021555 Chenopodium quinoa HOM05D006637 ORTHO05D001736 1.0e-08 65.1 98 48.0
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 1.3e-08 64.7 92 45.7
A09p24510 Brassica napus HOM05D003787 ORTHO05D001736 1.3e-08 64.7 92 45.7
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 1.3e-08 64.7 92 45.7
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 1.3e-08 64.7 92 45.7
BraA09t38045Z Brassica rapa HOM05D003787 ORTHO05D001736 1.3e-08 64.7 92 45.7
Sp2g14470 Schrenkiella parvula HOM05D003787 ORTHO05D001736 1.8e-08 64.3 96 44.8
Thecc.02G330000 Theobroma cacao HOM05D003787 ORTHO05D001736 3.9e-08 63.2 70 54.3
TAR374G1256 Trochodendron aralioides HOM05D003787 ORTHO05D001736 3.9e-08 63.2 176 33.0
CAN.G1228.21 Capsicum annuum HOM05D006637 ORTHO05D001736 5.1e-08 62.8 214 31.3
MELO3C012154.2 Cucumis melo HOM05D003787 ORTHO05D001736 5.1e-08 62.8 98 42.9
CsaV3_5G033340 Cucumis sativus L. HOM05D003787 ORTHO05D001736 5.1e-08 62.8 79 49.4
Duzib251G0768 Durio zibethinus HOM05D003787 ORTHO05D001736 5.1e-08 62.8 77 50.6
Lsat_1_v5_gn_4_111160 Lactuca sativa HOM05D006637 ORTHO05D001736 5.1e-08 62.8 113 38.1
QL03p074082 Quercus lobata HOM05D003787 ORTHO05D001736 5.1e-08 62.8 85 45.9
Sabra08G0072600 Salix brachista HOM05D003787 ORTHO05D001736 5.1e-08 62.8 142 34.5
Lj5C102T22 Lonicera japonica HOM05D006637 ORTHO05D001736 6.7e-08 62.4 247 30.4
PSO478G3423 Papaver somniferum HOM05D006637 ORTHO05D001736 6.7e-08 62.4 203 31.0
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 6.7e-08 62.4 255 27.8
vmacro16493 Vaccinium macrocarpon HOM05D006637 ORTHO05D001736 6.7e-08 62.4 144 38.9
COL.COLO4_06852 Corchorus olitorius HOM05D006637 ORTHO05D001736 8.7e-08 62.0 172 36.0
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 8.7e-08 62.0 160 38.1
PSO017G1216 Papaver somniferum HOM05D006637 ORTHO05D001736 8.7e-08 62.0 203 31.0
AUR62008536 Chenopodium quinoa HOM05D006637 ORTHO05D001736 1.1e-07 61.6 144 39.6
ClCG05G023700 Citrullus lanatus HOM05D003787 ORTHO05D001736 1.1e-07 61.6 88 47.7
Sabra10G0120000 Salix brachista HOM05D003787 ORTHO05D001736 1.1e-07 61.6 123 36.6
DCAR_025433 Daucus carota HOM05D003787 ORTHO05D001736 1.5e-07 61.2 225 32.0
Dinv22776 Davidia involucrata HOM05D006637 ORTHO05D001736 1.5e-07 61.2 138 36.2
Atru.chr11.1622 Acer truncatum HOM05D003787 ORTHO05D001736 1.9e-07 60.8 154 35.1
Gohir.A03G070200 Gossypium hirsutum HOM05D006637 ORTHO05D001736 1.9e-07 60.8 162 37.0
SHI15724 Sapria himalayana HOM05D003787 ORTHO05D001736 1.9e-07 60.8 94 44.7
Sc04g0004350 Simmondsia chinensis HOM05D006637 ORTHO05D001736 1.9e-07 60.8 282 30.1
TAR622G0628 Trochodendron aralioides HOM05D003787 ORTHO05D001736 1.9e-07 60.8 260 27.7
Ca_14358_v3 Cicer arietinum L. HOM05D006637 ORTHO05D001736 3.3e-07 60.1 295 29.5
Medtr3g025960 Medicago truncatula HOM05D006637 ORTHO05D001736 3.3e-07 60.1 300 28.7
AL5G13410 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 4.3e-07 59.7 57 57.9
BcaB07g30663 Brassica carinata HOM05D003787 ORTHO05D001736 4.3e-07 59.7 93 45.2
Nitab4.5_0003841g0060 Nicotiana tabacum HOM05D003787 ORTHO05D001736 5.7e-07 59.3 109 41.3
PGR119G1736 Punica granatum HOM05D003787 ORTHO05D001736 5.7e-07 59.3 128 36.7
CSS0033309 Camellia sinensis var. sinensis HOM05D006637 ORTHO05D001736 7.4e-07 58.9 159 32.7
CiPaw.05G124800 Carya illinoinensis HOM05D003787 ORTHO05D001736 7.4e-07 58.9 93 43.0
Solyc03g115060.3 Solanum lycopersicum HOM05D006637 ORTHO05D001736 7.4e-07 58.9 250 28.4
TAR629G2847 Trochodendron aralioides HOM05D003787 ORTHO05D001736 9.7e-07 58.5 269 29.0
CANSAT64G2286 Cannabis sativa HOM05D003787 ORTHO05D001736 1.3e-06 58.2 83 45.8
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 1.3e-06 58.2 109 40.4
Sc12g0007280 Simmondsia chinensis HOM05D006637 ORTHO05D001736 1.3e-06 58.2 290 32.8
PGSC0003DMG400024635 Solanum tuberosum HOM05D006637 ORTHO05D001736 1.3e-06 58.2 105 41.9
THA.LOC104805198 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 1.3e-06 58.2 84 46.4
Carub.0005s0277 Capsella rubella HOM05D003787 ORTHO05D001736 1.6e-06 57.8 252 29.4
Duzib268G1106 Durio zibethinus HOM05D003787 ORTHO05D001736 1.6e-06 57.8 127 37.0
Migut.I00333 Erythranthe guttata HOM05D006637 ORTHO05D001736 1.6e-06 57.8 131 36.6
Lju41C3T13 Lonicera japonica HOM05D003787 ORTHO05D001736 1.6e-06 57.8 149 38.9
MD16G1060800 Malus domestica HOM05D003787 ORTHO05D001736 1.6e-06 57.8 198 29.8
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 2.2e-06 57.4 90 42.2
Gorai.007G039500 Gossypium raimondii HOM05D006637 ORTHO05D001736 2.8e-06 57.0 253 28.5
Psat2g130920 Pisum sativum HOM05D014318 ORTHO05D001736 2.8e-06 57.0 69 53.6
Aqoxy3G00509 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 3.7e-06 56.6 251 30.7
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 3.7e-06 56.6 280 29.3
Oeu044877.1 Olea europaea HOM05D006637 ORTHO05D001736 3.7e-06 56.6 133 36.8
Rhsim09G0127000 Rhododendron simsii HOM05D003787 ORTHO05D001736 3.7e-06 56.6 69 52.2
Gohir.A12G161000 Gossypium hirsutum HOM05D039012 ORTHO05D001736 4.8e-06 56.2 57 50.9
Gohir.D03G096675 Gossypium hirsutum HOM05D006637 ORTHO05D001736 4.8e-06 56.2 200 34.0
MD13G1062500 Malus domestica HOM05D003787 ORTHO05D001736 4.8e-06 56.2 94 43.6
Gorai.008G176900 Gossypium raimondii HOM05D039012 ORTHO05D001736 6.3e-06 55.8 57 50.9
Lj2g0027532 Lotus japonicus HOM05D014318 ORTHO05D001736 6.3e-06 55.8 85 45.9
Manes.01G027300 Manihot esculenta HOM05D003787 ORTHO05D001736 8.2e-06 55.5 91 42.9
Sopen02g033550 Solanum pennellii HOM05D003787 ORTHO05D001736 8.2e-06 55.5 89 42.7


User provided reference genes

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