Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p33480 Brassica napus HOM05D004083 ORTHO05D005029 1.1e-249 866.3 474 100.0
BolC6t38462H Brassica oleracea HOM05D004083 ORTHO05D005029 1.1e-249 866.3 474 100.0
BcaC08g45598 Brassica carinata HOM05D004083 ORTHO05D005029 4.7e-221 771.2 474 90.9
BraA07t30587Z Brassica rapa HOM05D004083 ORTHO05D005029 7.1e-217 757.3 476 88.9
A07p29490 Brassica napus HOM05D004083 ORTHO05D005029 2.7e-216 755.4 476 88.0
Sp5g29430 Schrenkiella parvula HOM05D004083 ORTHO05D005029 1.3e-133 480.7 552 56.0
AL2G34130 Arabidopsis lyrata HOM05D004083 ORTHO05D005029 1.6e-131 473.8 546 55.1
Thhalv10018249m.g Eutrema salsugineum HOM05D004083 ORTHO05D005029 4.4e-126 455.7 555 55.3
AT1G74250 Arabidopsis thaliana HOM05D004083 ORTHO05D005029 1.3e-125 454.1 547 53.4
CARHR067510 Cardamine hirsuta HOM05D004083 ORTHO05D005029 2.2e-125 453.4 554 53.4
BraA02t06969Z Brassica rapa HOM05D004083 ORTHO05D005029 1.2e-118 431.0 527 54.5
Carub.0002s2104 Capsella rubella HOM05D004083 ORTHO05D005029 8.3e-117 424.9 548 52.2
BcaB05g24846 Brassica carinata HOM05D004083 ORTHO05D005029 3.0e-114 416.4 538 53.3
BcaC08g46857 Brassica carinata HOM05D004083 ORTHO05D005029 1.6e-112 410.6 512 55.9
A02p19220 Brassica napus HOM05D004083 ORTHO05D005029 3.0e-106 389.8 534 52.1
Aa31LG4G4540 Aethionema arabicum HOM05D004083 ORTHO05D005029 2.6e-102 376.7 557 48.1
C02p31810 Brassica napus HOM05D004083 ORTHO05D005029 6.4e-101 372.1 528 51.3
BolC2t09208H Brassica oleracea HOM05D004083 ORTHO05D005029 8.1e-96 355.1 528 49.4
BcaC03g15492 Brassica carinata HOM05D004083 ORTHO05D005029 2.7e-91 340.1 519 48.6
BcaC03g15497 Brassica carinata HOM05D004083 ORTHO05D005029 1.1e-87 328.2 516 46.7
Manes.06G085000 Manihot esculenta HOM05D004083 ORTHO05D005029 8.4e-77 292.0 533 40.3
THA.LOC104812102 Tarenaya hassleriana HOM05D004083 ORTHO05D005029 1.9e-76 290.8 558 40.7
Dinv22784 Davidia involucrata HOM05D004083 ORTHO05D005029 1.8e-74 284.3 525 39.4
Atru.chr9.431 Acer truncatum HOM05D004083 ORTHO05D005029 9.7e-73 278.5 531 39.9
Ciclev10019373m.g Citrus clementina HOM05D004083 ORTHO05D005029 4.1e-71 273.1 539 38.8
Gohir.A12G182366 Gossypium hirsutum HOM05D004083 ORTHO05D005029 8.5e-69 265.4 523 39.2
Gorai.008G198800 Gossypium raimondii HOM05D004083 ORTHO05D005029 8.5e-69 265.4 521 39.5
Rhsim08G0146200 Rhododendron simsii HOM05D004083 ORTHO05D005029 2.5e-68 263.8 527 38.1
Lalb_Chr13g0302881 Lupinus albus HOM05D004083 ORTHO05D005029 3.2e-68 263.5 547 38.6
Prupe.5G204600 Prunus persica HOM05D004083 ORTHO05D005029 9.4e-68 261.9 527 38.9
CiPaw.11G052900 Carya illinoinensis HOM05D004083 ORTHO05D005029 1.2e-67 261.5 549 36.2
Gohir.D12G185400 Gossypium hirsutum HOM05D004083 ORTHO05D005029 1.2e-67 261.5 520 38.8
Potri.009G018400 Populus trichocarpa HOM05D004083 ORTHO05D005029 1.2e-67 261.5 526 37.6
TAR264G0004 Trochodendron aralioides HOM05D004083 ORTHO05D005029 2.1e-67 260.8 549 36.4
Phvul.003G185100 Phaseolus vulgaris HOM05D004083 ORTHO05D005029 6.1e-67 259.2 552 36.6
CsaV3_1G002890 Cucumis sativus L. HOM05D004083 ORTHO05D005029 1.0e-66 258.5 528 37.7
Duzib205G0149 Durio zibethinus HOM05D004083 ORTHO05D005029 2.3e-66 257.3 523 38.4
arahy.Tifrunner.gnm1.ann1.UN52J1 Arachis hypogaea HOM05D004083 ORTHO05D005029 3.9e-66 256.5 548 37.6
PGSC0003DMG400024541 Solanum tuberosum HOM05D004083 ORTHO05D005029 8.8e-66 255.4 535 35.9
CDE04G1128 Ceratophyllum demersum HOM05D004083 ORTHO05D005029 1.9e-65 254.2 532 36.7
Solyc03g115140.4 Solanum lycopersicum HOM05D004083 ORTHO05D005029 5.7e-65 252.7 556 35.1
Sopen03g034200 Solanum pennellii HOM05D004083 ORTHO05D005029 3.7e-64 250.0 539 36.9
MD06G1202400 Malus domestica HOM05D004083 ORTHO05D005029 4.8e-64 249.6 529 38.0
Eucgr.B00587 Eucalyptus grandis HOM05D004083 ORTHO05D005029 1.1e-63 248.4 538 36.8
HPP92_009477 Vanilla planifolia HOM05D004083 ORTHO05D005029 1.4e-63 248.1 488 36.3
FAN08G2807 Fragaria x ananassa HOM05D004083 ORTHO05D005029 4.1e-63 246.5 562 36.5
Lj5C102T12 Lonicera japonica HOM05D004083 ORTHO05D005029 9.1e-63 245.4 534 36.7
Glyma.17G078100 Glycine max HOM05D004083 ORTHO05D005029 2.2e-61 240.7 570 35.6
Oeu042728.1 Olea europaea HOM05D004083 ORTHO05D005029 2.2e-61 240.7 534 33.3
RcHm_v2.0_Chr7g0183041 Rosa chinensis HOM05D004083 ORTHO05D005029 2.9e-61 240.4 557 36.3
Sabra09G0010400 Salix brachista HOM05D004083 ORTHO05D005029 2.9e-61 240.4 580 34.5
MELO3C017222.2 Cucumis melo HOM05D004083 ORTHO05D005029 3.8e-61 240.0 503 36.6
Aqoxy3G03641 Aquilegia oxysepala HOM05D004083 ORTHO05D005029 3.2e-60 236.9 550 35.3
CAN.G1228.28 Capsicum annuum HOM05D004083 ORTHO05D000105 3.2e-60 236.9 509 36.7
Ca_21778_v3 Cicer arietinum L. HOM05D004083 ORTHO05D005029 4.2e-60 236.5 578 34.4
Haze_07719 Corylus avellana HOM05D004083 ORTHO05D005029 7.2e-60 235.7 514 38.9
Sed0001011 Sechium edule HOM05D004083 ORTHO05D005029 7.2e-60 235.7 552 35.5
MSTRG.9600 Avicennia marina HOM05D004083 ORTHO05D005029 9.4e-60 235.3 520 35.2
Oeu014402.1 Olea europaea HOM05D004083 ORTHO05D005029 9.4e-60 235.3 532 34.8
Lsat_1_v5_gn_5_22480 Lactuca sativa HOM05D004083 ORTHO05D005029 4.7e-59 233.0 487 36.3
ECA232G3573 Erigeron canadensis HOM05D004083 ORTHO05D005029 6.1e-59 232.6 533 35.1
FAN18G2285 Fragaria x ananassa HOM05D004083 ORTHO05D005029 3.0e-58 230.3 536 35.8
FAN13G2878 Fragaria x ananassa HOM05D004083 ORTHO05D005029 6.7e-58 229.2 566 35.7
FvH4_5g13920 Fragaria vesca HOM05D004083 ORTHO05D005029 8.8e-58 228.8 551 34.1
ClCG06G015670 Citrullus lanatus HOM05D004083 ORTHO05D005029 3.3e-57 226.9 524 35.5
Sc04g0004330 Simmondsia chinensis HOM05D004083 ORTHO05D005029 3.3e-57 226.9 518 36.1
MD14G1211500 Malus domestica HOM05D004083 ORTHO05D005029 9.7e-57 225.3 509 36.9
Medtr4g109510 Medicago truncatula HOM05D004083 ORTHO05D005029 9.7e-57 225.3 561 34.0
MBI19_g37728_MAGBIO Magnolia biondii HOM05D004083 ORTHO05D005029 1.7e-56 224.6 536 35.1
Cpa.g.sc94.53 Carica papaya HOM05D004083 ORTHO05D005029 2.2e-56 224.2 285 44.6
vmacro17608 Vaccinium macrocarpon HOM05D004083 ORTHO05D005029 2.8e-56 223.8 530 36.0
Ah.11g047840 Amaranthus hybridus HOM05D004083 ORTHO05D005029 3.7e-56 223.4 527 33.0
HanXRQChr16g0502431 Helianthus annuus HOM05D004083 ORTHO05D005029 3.7e-56 223.4 552 34.6
arahy.Tifrunner.gnm1.ann1.9WPU3R Arachis hypogaea HOM05D004083 ORTHO05D005029 4.8e-56 223.0 539 34.5
Cfa019327 Carpinus fangiana HOM05D004083 ORTHO05D005029 1.4e-55 221.5 446 40.4
SGA_v2.0_scaffold42G16038 Striga asiatica HOM05D004083 ORTHO05D005029 1.5e-54 218.0 560 33.6
Lj4g0020958 Lotus japonicus HOM05D004083 ORTHO05D005029 3.4e-54 216.9 555 33.9
TPR.G2055 Trifolium pratense HOM05D004083 ORTHO05D005029 3.4e-54 216.9 558 33.9
EL10Ac5g11124 Beta vulgaris HOM05D004083 ORTHO05D005029 7.7e-54 215.7 562 33.3
QL10p019423 Quercus lobata HOM05D004083 ORTHO05D005029 7.7e-54 215.7 547 34.6
PGR083G0930 Punica granatum HOM05D004083 ORTHO05D005029 1.0e-53 215.3 539 33.8
Hma1.2p1_0060F.1_g033140 Hydrangea macrophylla HOM05D004083 ORTHO05D005029 3.8e-53 213.4 520 33.8
DCAR_023173 Daucus carota HOM05D004083 ORTHO05D005029 6.5e-53 212.6 417 38.1
Nn3g17443 Nelumbo nucifera HOM05D004083 ORTHO05D005029 1.4e-52 211.5 521 33.8
Hma1.2p1_0060F.1_g033150 Hydrangea macrophylla HOM05D004083 ORTHO05D005029 1.9e-52 211.1 522 33.7
Glyma.05G021300 Glycine max HOM05D004083 ORTHO05D005029 2.7e-51 207.2 552 32.6
SEGI_38744 Sequoiadendron giganteum HOM05D004083 ORTHO05D005029 2.7e-51 207.2 572 32.0
TWI15G0273 Tripterygium wilfordii HOM05D004083 ORTHO05D005029 4.7e-51 206.5 556 32.6
Zm00001eb409280 Zea mays HOM05D004083 ORTHO05D005029 1.4e-50 204.9 343 38.5
SHI27062 Sapria himalayana HOM05D004083 ORTHO05D005029 1.8e-50 204.5 419 36.0
VMungo1215G1356 Vigna mungo HOM05D004083 ORTHO05D005029 2.3e-50 204.1 477 35.8
Solyc03g115120.1 Solanum lycopersicum HOM05D004083 ORTHO05D005029 5.2e-50 203.0 232 50.0
SalBow2G0571 Salvia bowleyana HOM05D004083 ORTHO05D005029 8.8e-50 202.2 525 33.5
Sopen03g034190 Solanum pennellii HOM05D004083 ORTHO05D005029 8.8e-50 202.2 232 50.4
AUR62008522 Chenopodium quinoa HOM05D004083 ORTHO05D005029 1.5e-49 201.4 516 34.9
PSO478G3647 Papaver somniferum HOM05D004083 ORTHO05D005029 2.6e-49 200.7 523 32.1
Lalb_Chr12g0197191 Lupinus albus HOM05D004083 ORTHO05D005029 3.3e-49 200.3 234 45.7
PSO017G0790 Papaver somniferum HOM05D004083 ORTHO05D005029 2.2e-48 197.6 529 33.1
Zm00001eb409390 Zea mays HOM05D004083 ORTHO05D005029 4.8e-48 196.4 323 39.6
CANSAT80G2443 Cannabis sativa HOM05D004083 ORTHO05D005029 9.1e-47 192.2 448 35.5
Zm00001eb409300 Zea mays HOM05D004083 ORTHO05D005029 1.6e-46 191.4 321 38.9
Zm00001eb409350 Zea mays HOM05D004083 ORTHO05D005029 2.0e-46 191.0 321 39.3
Nitab4.5_0012564g0020 Nicotiana tabacum HOM05D004083 ORTHO05D005029 1.3e-45 188.3 537 32.8
Lsat_1_v5_gn_4_111021 Lactuca sativa HOM05D004083 ORTHO05D005029 6.5e-45 186.0 458 37.3
Migut.D01668 Erythranthe guttata HOM05D004083 ORTHO05D005029 1.1e-44 185.3 533 31.0
Hund02589 Selenicereus undatus HOM05D004083 ORTHO05D005029 2.5e-44 184.1 540 31.7
SalBow7G3022 Salvia bowleyana HOM05D004083 ORTHO05D005029 5.5e-44 183.0 545 31.9
CBR_g40972 Chara braunii HOM05D004083 ORTHO05D005029 4.7e-43 179.9 270 38.1
Os12g0502700 Oryza sativa ssp. japonica HOM05D004083 ORTHO05D005029 2.3e-42 177.6 510 30.8
ATR0064G112 Amborella trichopoda HOM05D004083 ORTHO05D005029 1.5e-41 174.9 494 31.4
SMO203G0173 Selaginella moellendorffii HOM05D004083 ORTHO05D005029 1.3e-40 171.8 270 40.0
Mapoly0088s0065 Marchantia polymorpha HOM05D004083 ORTHO05D005029 3.5e-38 163.7 330 34.8
Cc00_g07590 Coffea canephora HOM05D004083 ORTHO05D005029 1.1e-36 158.7 483 32.1
Peaxi162Scf00201g00248 Petunia axillaris HOM05D004083 ORTHO05D005029 7.2e-36 156.0 531 30.9
Nitab4.5_0001485g0130 Nicotiana tabacum HOM05D004083 ORTHO05D005029 3.4e-33 147.1 384 34.4
FvH4_5g13880 Fragaria vesca HOM05D004083 ORTHO05D005029 2.2e-32 144.4 363 32.2
AagrBONN_evm.TU.Sc2ySwM_228.3286 Anthoceros agrestis HOM05D004083 ORTHO05D005029 6.3e-32 142.9 282 34.0
PGSC0003DMG400024540 Solanum tuberosum HOM05D004083 ORTHO05D005029 1.8e-31 141.4 170 44.7
MCO13G099 Micromonas commoda HOM05D004083 ORTHO05D005029 1.2e-30 138.7 246 34.1
RcHm_v2.0_Chr7g0183051 Rosa chinensis HOM05D004083 ORTHO05D005029 1.3e-29 135.2 395 31.4
Pp3c5_3270 Physcomitrium patens HOM05D004083 ORTHO05D005029 2.5e-28 131.0 610 26.9
RcHm_v2.0_Chr7g0200711 Rosa chinensis HOM05D004083 ORTHO05D005029 7.2e-28 129.4 440 30.9
FvH4_4g18280 Fragaria vesca HOM05D004083 ORTHO05D005029 2.1e-27 127.9 393 32.3
AUR62021567 Chenopodium quinoa HOM05D004083 ORTHO05D005029 2.8e-27 127.5 529 30.8
unitig_748.g8703 Utricularia gibba HOM05D004083 ORTHO05D005029 4.9e-24 116.7 510 30.6
Cre05.g240650 Chlamydomonas reinhardtii HOM05D004083 ORTHO05D005029 6.3e-24 116.3 258 36.0
Psat0s3618g0080 Pisum sativum HOM05D004083 ORTHO05D005029 1.1e-23 115.5 529 27.2
FvH4_5g00881 Fragaria vesca HOM05D004083 ORTHO05D005029 3.1e-23 114.0 429 29.1
FAN04G0828 Fragaria x ananassa HOM05D004083 ORTHO05D005029 7.0e-23 112.8 426 30.0
Actinidia00358 Actinidia chinensis HOM05D004083 ORTHO05D005029 9.2e-23 112.5 236 36.4
FAN18G2457 Fragaria x ananassa HOM05D004083 ORTHO05D005029 1.2e-22 112.1 429 29.1
RcHm_v2.0_Chr7g0200511 Rosa chinensis HOM05D004083 ORTHO05D005029 1.5e-20 105.1 184 39.7
Thecc.03G101200 Theobroma cacao HOM05D004083 ORTHO05D005029 5.6e-20 103.2 378 32.5
TWI56G0106 Tripterygium wilfordii HOM05D004083 ORTHO05D005029 7.3e-20 102.8 304 29.6
FAN24G2149 Fragaria x ananassa HOM05D004083 ORTHO05D005029 2.1e-19 101.3 176 35.2
Actinidia05940 Actinidia chinensis HOM05D004083 ORTHO05D005029 4.7e-19 100.1 80 58.8
FAN12G2651 Fragaria x ananassa HOM05D004083 ORTHO05D005029 3.1e-18 97.4 360 31.1
TWI56G1375 Tripterygium wilfordii HOM05D004083 ORTHO05D005029 1.5e-17 95.1 153 40.5
TWI12G1289 Tripterygium wilfordii HOM05D004083 ORTHO05D005029 2.2e-16 91.3 149 38.3
FAN13G1062 Fragaria x ananassa HOM05D004083 ORTHO05D005029 7.0e-15 86.3 357 28.0
RcHm_v2.0_Chr2g0129321 Rosa chinensis HOM05D004083 ORTHO05D005029 9.2e-15 85.9 90 42.2
PRCOL_00006068 Prasinoderma coloniale HOM05D004083 ORTHO05D005029 8.9e-10 69.3 501 24.6
Actinidia16125 Actinidia chinensis HOM05D004083 ORTHO05D005029 3.7e-08 63.9 153 37.3
FAN06G1810 Fragaria x ananassa HOM05D004083 ORTHO05D005029 4.9e-08 63.5 40 67.5
FAN17G1600 Fragaria x ananassa HOM05D004083 ORTHO05D005029 4.9e-08 63.5 40 67.5
FAN21G0677 Fragaria x ananassa HOM05D004083 ORTHO05D005029 4.9e-08 63.5 40 67.5
Hma1.2p1_0456F.1_g156540 Hydrangea macrophylla HOM05D004083 ORTHO05D005029 4.9e-08 63.5 180 30.0
SHI32030 Sapria himalayana HOM05D004083 ORTHO05D005029 6.4e-08 63.2 385 26.0
Zm00001eb409320 Zea mays HOM05D004083 ORTHO05D005029 8.3e-08 62.8 99 37.4
Cfa025727 Carpinus fangiana HOM05D004083 ORTHO05D005029 1.1e-07 62.4 475 24.2
FAN02G1868 Fragaria x ananassa HOM05D004083 ORTHO05D005029 2.4e-07 61.2 40 65.0
Cpa.g.sc94.52 Carica papaya HOM05D004083 ORTHO05D005029 5.4e-07 60.1 230 30.4
GSVIVG01033228001 Vitis vinifera HOM05D004083 ORTHO05D005029 1.6e-06 58.5 266 30.8


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