Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45539 Brassica carinata HOM05D006241 ORTHO05D007842 5.0e-36 153.7 66 100.0
C06p32170 Brassica napus HOM05D006241 ORTHO05D007842 5.0e-36 153.7 66 100.0
BolC6t38340H Brassica oleracea HOM05D006241 ORTHO05D007842 5.0e-36 153.7 66 100.0
BraA07t30500Z Brassica rapa HOM05D006241 ORTHO05D007842 2.1e-34 148.3 66 95.5
BcaB02g07055 Brassica carinata HOM05D006241 ORTHO05D007842 2.6e-32 141.4 68 91.2
A07p28590 Brassica napus HOM05D006241 ORTHO05D007842 2.6e-32 141.4 68 91.2
BraA07t31707Z Brassica rapa HOM05D006241 ORTHO05D007842 2.8e-31 137.9 68 91.2
BcaC08g47119 Brassica carinata HOM05D006241 ORTHO05D007842 3.7e-31 137.5 69 89.9
BcaC08g47281 Brassica carinata HOM05D006241 ORTHO05D007842 3.7e-31 137.5 69 89.9
A07p41770 Brassica napus HOM05D006241 ORTHO05D007842 3.7e-31 137.5 69 89.9
C06p50150 Brassica napus HOM05D006241 ORTHO05D007842 3.7e-31 137.5 69 89.9
BolC6t40055H Brassica oleracea HOM05D006241 ORTHO05D007842 3.7e-31 137.5 69 89.9
BcaC08g47115 Brassica carinata HOM05D006241 ORTHO05D007842 6.3e-31 136.7 64 92.2
AL2G36270 Arabidopsis lyrata HOM05D006241 ORTHO05D007842 1.4e-30 135.6 67 88.1
AT1G76200 Arabidopsis thaliana HOM05D006241 ORTHO05D007842 1.4e-30 135.6 67 88.1
CARHR069760 Cardamine hirsuta HOM05D006241 ORTHO05D007842 4.1e-30 134.0 67 86.6
Carub.0002s2310 Capsella rubella HOM05D006241 ORTHO05D007842 9.1e-30 132.9 64 89.1
Sp5g31350 Schrenkiella parvula HOM05D006241 ORTHO05D007842 9.1e-30 132.9 64 89.1
BcaB05g24973 Brassica carinata HOM05D006241 ORTHO05D007842 2.7e-29 131.3 61 91.8
BraA02t07081Z Brassica rapa HOM05D006241 ORTHO05D007842 2.7e-29 131.3 57 94.7
Lj3g0010530 Lotus japonicus HOM05D006241 ORTHO05D007842 1.7e-28 128.6 65 81.5
Thhalv10019410m.g Eutrema salsugineum HOM05D006241 ORTHO05D007842 5.0e-28 127.1 67 86.6
Aa31LG4G6300 Aethionema arabicum HOM05D006241 ORTHO05D007842 4.2e-27 124.0 67 80.6
FvH4_2g37630 Fragaria vesca HOM05D006241 ORTHO05D007842 2.7e-26 121.3 69 75.4
MELO3C017010.2 Cucumis melo HOM05D006241 ORTHO05D007842 3.6e-26 120.9 65 75.4
Ca_19011_v3 Cicer arietinum L. HOM05D006241 ORTHO05D007842 6.1e-26 120.2 64 75.0
CsaV3_4G037120 Cucumis sativus L. HOM05D006241 ORTHO05D007842 3.0e-25 117.9 67 73.1
arahy.Tifrunner.gnm1.ann1.1F1YZI Arachis hypogaea HOM05D006241 ORTHO05D007842 4.0e-25 117.5 61 75.4
arahy.Tifrunner.gnm1.ann1.1NSU2H Arachis hypogaea HOM05D006241 ORTHO05D007842 4.0e-25 117.5 61 75.4
arahy.Tifrunner.gnm1.ann1.4R2MNP Arachis hypogaea HOM05D006241 ORTHO05D007842 4.0e-25 117.5 61 75.4
arahy.Tifrunner.gnm1.ann1.L8CN1K Arachis hypogaea HOM05D006241 ORTHO05D007842 4.0e-25 117.5 61 75.4
Sabra05G0192000 Salix brachista HOM05D006241 ORTHO05D007842 4.0e-25 117.5 61 77.0
THA.LOC109116669 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 4.0e-25 117.5 67 71.6
COL.COLO4_21601 Corchorus olitorius HOM05D006241 ORTHO05D007842 5.2e-25 117.1 67 74.6
Migut.N03197 Erythranthe guttata HOM05D006241 ORTHO05D007842 5.2e-25 117.1 65 76.9
FAN15G0812 Fragaria x ananassa HOM05D006241 ORTHO05D007842 6.8e-25 116.7 69 72.5
THA.LOC104811457 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 6.8e-25 116.7 67 70.1
CSS0008517 Camellia sinensis var. sinensis HOM05D006241 ORTHO05D007842 8.8e-25 116.3 64 71.9
Manes.05G136000 Manihot esculenta HOM05D006241 ORTHO05D007842 8.8e-25 116.3 65 73.8
QL02p013848 Quercus lobata HOM05D006241 ORTHO05D007842 8.8e-25 116.3 66 71.2
Prupe.1G355800 Prunus persica HOM05D006241 ORTHO05D007842 1.2e-24 115.9 65 72.3
Manes.18G006720 Manihot esculenta HOM05D006241 ORTHO05D007842 1.5e-24 115.5 65 73.8
Potri.005G248600 Populus trichocarpa HOM05D006241 ORTHO05D007842 1.5e-24 115.5 61 73.8
Atru.chr13.161 Acer truncatum HOM05D006241 ORTHO05D007842 2.0e-24 115.2 61 77.0
Psat7g177480 Pisum sativum HOM05D006241 ORTHO05D007842 2.0e-24 115.2 66 72.7
Cc10_g00830 Coffea canephora HOM05D006241 ORTHO05D007842 2.6e-24 114.8 64 70.3
Duzib116G0823 Durio zibethinus HOM05D006241 ORTHO05D007842 3.4e-24 114.4 64 71.9
Potri.002G012700 Populus trichocarpa HOM05D006241 ORTHO05D007842 3.4e-24 114.4 61 73.8
SGA_v2.0_scaffold25G11191 Striga asiatica HOM05D006241 ORTHO05D007842 3.4e-24 114.4 60 75.0
Actinidia17033 Actinidia chinensis HOM05D006241 ORTHO05D007842 4.4e-24 114.0 64 70.3
PGSC0003DMG400009898 Solanum tuberosum HOM05D006241 ORTHO05D007842 4.4e-24 114.0 63 73.0
Actinidia15484 Actinidia chinensis HOM05D006241 ORTHO05D007842 7.5e-24 113.2 64 68.8
Eucgr.F01733 Eucalyptus grandis HOM05D006241 ORTHO05D007842 7.5e-24 113.2 60 75.0
Glyma.12G025500 Glycine max HOM05D006241 ORTHO05D007842 7.5e-24 113.2 66 71.2
CAN.G311.105 Capsicum annuum HOM05D006241 ORTHO05D007842 9.8e-24 112.8 63 71.4
Glyma.11G099500 Glycine max HOM05D006241 ORTHO05D007842 9.8e-24 112.8 66 72.7
Gohir.D05G183800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 9.8e-24 112.8 64 70.3
Gorai.009G189100 Gossypium raimondii HOM05D006241 ORTHO05D007842 9.8e-24 112.8 64 70.3
Thecc.08G056300 Theobroma cacao HOM05D006241 ORTHO05D007842 9.8e-24 112.8 64 70.3
CiPaw.08G071900 Carya illinoinensis HOM05D006241 ORTHO05D007842 1.3e-23 112.5 64 70.3
Duzib093G0667 Durio zibethinus HOM05D006241 ORTHO05D007842 1.3e-23 112.5 63 71.4
Cpa.g.sc222.6 Carica papaya HOM05D006241 ORTHO05D007842 2.2e-23 111.7 69 68.1
CiPaw.07G140100 Carya illinoinensis HOM05D006241 ORTHO05D007842 2.2e-23 111.7 64 70.3
Lalb_Chr10g0094931 Lupinus albus HOM05D006241 ORTHO05D007842 2.2e-23 111.7 61 73.8
PGR031G1817 Punica granatum HOM05D006241 ORTHO05D007842 2.2e-23 111.7 66 69.7
TAR376G1175 Trochodendron aralioides HOM05D006241 ORTHO05D007842 2.8e-23 111.3 60 70.0
Phvul.011G027800 Phaseolus vulgaris HOM05D006241 ORTHO05D007842 3.7e-23 110.9 67 68.7
Gohir.D01G094000 Gossypium hirsutum HOM05D006241 ORTHO05D007842 4.8e-23 110.5 64 68.8
Gorai.002G119300 Gossypium raimondii HOM05D006241 ORTHO05D007842 4.8e-23 110.5 64 68.8
Nn5g30908 Nelumbo nucifera HOM05D006241 ORTHO05D007842 4.8e-23 110.5 64 65.6
TWI56G0163 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 4.8e-23 110.5 61 75.4
Gohir.A01G107600 Gossypium hirsutum HOM05D006241 ORTHO05D007842 6.3e-23 110.2 64 68.8
Gohir.A05G180800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 6.3e-23 110.2 64 70.3
CANSAT54G0965 Cannabis sativa HOM05D006241 ORTHO05D007842 8.3e-23 109.8 65 66.2
Lalb_Chr17g0337811 Lupinus albus HOM05D006241 ORTHO05D007842 1.1e-22 109.4 67 70.1
TWI12G0416 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 1.1e-22 109.4 61 73.8
Lsat_1_v5_gn_8_133721 Lactuca sativa HOM05D006241 ORTHO05D007842 1.8e-22 108.6 66 72.7
Duzib041G0756 Durio zibethinus HOM05D006241 ORTHO05D007842 3.1e-22 107.8 69 66.7
Cfa014051 Carpinus fangiana HOM05D006241 ORTHO05D007842 4.1e-22 107.5 63 68.3
PSO170G5266 Papaver somniferum HOM05D006241 ORTHO05D007842 4.1e-22 107.5 60 68.3
PSO357G0248 Papaver somniferum HOM05D006241 ORTHO05D007842 4.1e-22 107.5 60 68.3
Dinv39579 Davidia involucrata HOM05D006241 ORTHO05D007842 5.4e-22 107.1 60 68.3
TAR381G1678 Trochodendron aralioides HOM05D006241 ORTHO05D007842 5.4e-22 107.1 61 65.6
Dinv31923 Davidia involucrata HOM05D006241 ORTHO05D007842 9.1e-22 106.3 60 68.3
Ciclev10010113m.g Citrus clementina HOM05D006241 ORTHO05D007842 1.6e-21 105.5 64 65.6
Os05g0122900 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 1.6e-21 105.5 60 71.7
Aqoxy6G01804 Aquilegia oxysepala HOM05D006241 ORTHO05D007842 3.5e-21 104.4 63 68.3
CDE05G0950 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 3.5e-21 104.4 60 66.7
CDE05G1511 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 3.5e-21 104.4 60 66.7
ECA248G1104 Erigeron canadensis HOM05D006241 ORTHO05D007842 3.5e-21 104.4 71 67.6
Zm00001eb294120 Zea mays HOM05D006241 ORTHO05D007842 2.3e-20 101.7 60 68.3
Zm00001eb356460 Zea mays HOM05D006241 ORTHO05D007842 2.3e-20 101.7 60 68.3
BolC2t09367H Brassica oleracea HOM05D006241 ORTHO05D007842 2.9e-20 101.3 45 95.6
GSVIVG01008691001 Vitis vinifera HOM05D006241 ORTHO05D007842 3.8e-20 100.9 51 74.5
ATR0661G361 Amborella trichopoda HOM05D006241 ORTHO05D007842 4.2e-19 97.4 62 62.9
Os06g0725400 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 7.2e-19 96.7 61 67.2
AagrBONN_evm.TU.Sc2ySwM_117.850 Anthoceros agrestis HOM05D006241 ORTHO05D007842 9.5e-19 96.3 57 64.9
Pp3c21_21340 Physcomitrium patens HOM05D006241 ORTHO05D007842 1.0e-17 92.8 67 59.7
Pp3c18_1920 Physcomitrium patens HOM05D006241 ORTHO05D007842 4.0e-17 90.9 69 56.5
VMungo1127G1075 Vigna mungo HOM05D006241 ORTHO05D007842 4.0e-17 90.9 60 66.7
FAN20G1861 Fragaria x ananassa HOM05D006241 ORTHO05D007842 1.2e-16 89.4 48 77.1
Mapoly0103s0030 Marchantia polymorpha HOM05D006241 ORTHO05D007842 2.6e-16 88.2 55 60.0
Mapoly0108s0047 Marchantia polymorpha HOM05D006241 ORTHO05D007842 3.4e-16 87.8 58 56.9
Nitab4.5_0000588g0230 Nicotiana tabacum HOM05D006241 ORTHO05D007842 3.4e-16 87.8 49 71.4
MD08G1003800 Malus domestica HOM05D006241 ORTHO05D007842 4.4e-16 87.4 49 69.4
RcHm_v2.0_Chr6g0304101 Rosa chinensis HOM05D006241 ORTHO05D007842 4.4e-16 87.4 48 72.9
MD15G1003400 Malus domestica HOM05D006241 ORTHO05D007842 2.2e-15 85.1 48 68.8
HanXRQChr17g0555751 Helianthus annuus HOM05D006241 ORTHO05D007842 7.0e-14 80.1 49 71.4
HanXRQChr17g0554651 Helianthus annuus HOM05D006241 ORTHO05D007842 9.2e-14 79.7 49 69.4
HPP92_021050 Vanilla planifolia HOM05D006241 ORTHO05D007842 1.6e-13 79.0 48 64.6
MBI19_g43741_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 2.7e-13 78.2 48 62.5
Hund08526 Selenicereus undatus HOM05D006241 ORTHO05D007842 3.9e-12 74.3 51 62.7
SalBow6G4847 Salvia bowleyana HOM05D006241 ORTHO05D007842 1.0e-09 66.2 47 63.8
vmacro04395 Vaccinium macrocarpon HOM05D006241 ORTHO05D007842 1.0e-09 66.2 31 77.4
Sabra07G0051400 Salix brachista HOM05D006241 ORTHO05D349851 7.5e-08 60.1 49 53.1
DCAR_013903 Daucus carota HOM05D006241 ORTHO05D007842 9.8e-08 59.7 52 57.7
Medtr4g075160 Medicago truncatula HOM05D006241 ORTHO05D007842 3.2e-06 54.7 29 72.4
Sed0002381 Sechium edule HOM05D006241 ORTHO05D007842 7.0e-06 53.5 36 63.9
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 7.0e-06 53.5 33 66.7
ClCG05G015200 Citrullus lanatus HOM05D006241 ORTHO05D007842 9.2e-06 53.1 36 63.9


User provided reference genes

Program Settings