Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38273H Brassica oleracea HOM05D004258 ORTHO05D005163 3.8e-266 921.0 482 100.0
C06p31370 Brassica napus HOM05D004258 ORTHO05D005163 6.5e-250 867.1 487 95.1
BraA07t30452Z Brassica rapa HOM05D004258 ORTHO05D005163 1.2e-235 819.7 486 86.0
A07p28070 Brassica napus HOM05D004258 ORTHO05D005163 1.7e-229 799.3 486 84.6
BcaB02g07100 Brassica carinata HOM05D004258 ORTHO05D005163 4.5e-211 738.0 497 82.7
Sp5g32420 Schrenkiella parvula HOM05D004258 ORTHO05D005163 4.4e-190 668.3 514 74.5
Carub.0002s2412 Capsella rubella HOM05D004258 ORTHO05D005163 2.3e-178 629.4 511 65.2
BcaC08g45483 Brassica carinata HOM05D004258 ORTHO05D005163 1.9e-177 626.3 393 85.2
CARHR070720 Cardamine hirsuta HOM05D004258 ORTHO05D005163 1.9e-177 626.3 503 65.6
AL2G37430 Arabidopsis lyrata HOM05D004258 ORTHO05D005163 5.6e-177 624.8 511 66.1
Thhalv10018403m.g Eutrema salsugineum HOM05D004258 ORTHO05D005163 2.1e-176 622.9 514 66.0
AT1G77250 Arabidopsis thaliana HOM05D004258 ORTHO05D005163 2.3e-175 619.4 512 65.6
Aa31LG4G7240 Aethionema arabicum HOM05D004258 ORTHO05D005163 6.6e-154 548.1 496 61.1
C06p51420 Brassica napus HOM05D004258 ORTHO05D005163 9.6e-145 517.7 501 59.3
A07p42810 Brassica napus HOM05D004258 ORTHO05D005163 5.8e-142 508.4 510 57.5
BolC6t40160H Brassica oleracea HOM05D004258 ORTHO05D005163 1.1e-137 494.2 515 56.3
A06p09270 Brassica napus HOM05D004258 ORTHO05D005163 2.5e-137 493.0 297 81.8
BraA07t31801Z Brassica rapa HOM05D004258 ORTHO05D005163 2.2e-133 479.9 520 54.8
BcaNung04998 Brassica carinata HOM05D004258 ORTHO05D005163 8.8e-122 441.4 604 47.4
THA.LOC104813686 Tarenaya hassleriana HOM05D004258 ORTHO05D005163 8.8e-122 441.4 521 49.1
THA.LOC104812076 Tarenaya hassleriana HOM05D004258 ORTHO05D005163 2.3e-114 416.8 523 47.4
Duzib116G0801 Durio zibethinus HOM05D004258 ORTHO05D005163 2.3e-77 293.9 452 39.6
Atru.chr13.1596 Acer truncatum HOM05D004258 ORTHO05D005163 2.9e-77 293.5 556 37.6
RcHm_v2.0_Chr6g0296911 Rosa chinensis HOM05D004258 ORTHO05D005163 5.0e-77 292.7 407 41.0
Gohir.D05G240700 Gossypium hirsutum HOM05D004258 ORTHO05D005163 8.6e-77 292.0 403 40.4
Gorai.009G249500 Gossypium raimondii HOM05D004258 ORTHO05D005163 8.6e-77 292.0 403 40.4
Thecc.08G134400 Theobroma cacao HOM05D004258 ORTHO05D005163 7.3e-76 288.9 590 34.4
Gohir.A05G238700 Gossypium hirsutum HOM05D004258 ORTHO05D005163 9.5e-76 288.5 403 40.2
Cfa018415 Carpinus fangiana HOM05D004258 ORTHO05D005163 1.6e-75 287.7 462 39.4
COL.COLO4_37672 Corchorus olitorius HOM05D004258 ORTHO05D005163 1.6e-75 287.7 455 37.8
Gohir.D05G240600 Gossypium hirsutum HOM05D004258 ORTHO05D005163 3.6e-75 286.6 468 41.5
Gorai.009G249400 Gossypium raimondii HOM05D004258 ORTHO05D005163 3.6e-75 286.6 468 41.5
Haze_17646 Corylus avellana HOM05D004258 ORTHO05D005163 8.0e-75 285.4 462 38.5
Prupe.1G487600 Prunus persica HOM05D004258 ORTHO05D005163 2.9e-72 276.9 401 39.2
MD08G1160700 Malus domestica HOM05D004258 ORTHO05D005163 4.9e-72 276.2 387 41.1
MD15G1132400 Malus domestica HOM05D004258 ORTHO05D005163 4.1e-71 273.1 403 39.7
Dinv27259 Davidia involucrata HOM05D004258 ORTHO05D005163 9.2e-71 271.9 390 39.2
QL09p032109 Quercus lobata HOM05D004258 ORTHO05D005163 9.2e-71 271.9 402 40.3
FvH4_2g28030 Fragaria vesca HOM05D004258 ORTHO05D005163 1.6e-70 271.2 411 39.4
Lj1g0024592 Lotus japonicus HOM05D004258 ORTHO05D005163 3.5e-70 270.0 482 37.8
Manes.18G083535 Manihot esculenta HOM05D004258 ORTHO05D005163 4.6e-70 269.6 402 38.8
vmacro00873 Vaccinium macrocarpon HOM05D004258 ORTHO05D005163 4.6e-70 269.6 484 37.0
QL09p031581 Quercus lobata HOM05D004258 ORTHO05D005163 1.0e-69 268.5 402 39.8
CiPaw.15G030100 Carya illinoinensis HOM05D004258 ORTHO05D005163 3.9e-69 266.5 407 41.0
Gohir.A05G238800 Gossypium hirsutum HOM05D004258 ORTHO05D005163 3.9e-69 266.5 457 35.2
Actinidia21269 Actinidia chinensis HOM05D004258 ORTHO05D005163 8.6e-69 265.4 391 40.7
TWI34G1292 Tripterygium wilfordii HOM05D004258 ORTHO05D005163 1.1e-68 265.0 383 39.7
Actinidia15205 Actinidia chinensis HOM05D004258 ORTHO05D005163 1.9e-68 264.2 392 39.8
Ca_16617_v3 Cicer arietinum L. HOM05D004258 ORTHO05D005163 3.3e-68 263.5 444 37.2
VMungo0647G1746 Vigna mungo HOM05D004258 ORTHO05D005163 5.6e-68 262.7 408 39.0
Ah.05g169020 Amaranthus hybridus HOM05D004258 ORTHO05D005163 9.5e-68 261.9 407 43.5
Phvul.001G067001 Phaseolus vulgaris HOM05D004258 ORTHO05D005163 9.5e-68 261.9 471 37.2
CSS0048101 Camellia sinensis var. sinensis HOM05D004258 ORTHO05D005163 1.2e-67 261.5 385 38.7
Eucgr.E00982 Eucalyptus grandis HOM05D004258 ORTHO05D005163 1.6e-67 261.2 401 37.9
CiPaw.15G030500 Carya illinoinensis HOM05D004258 ORTHO05D005163 2.1e-67 260.8 407 38.8
Rhsim11G0072600 Rhododendron simsii HOM05D004258 ORTHO05D005163 3.6e-67 260.0 396 36.9
Ciclev10000725m.g Citrus clementina HOM05D004258 ORTHO05D005163 8.0e-67 258.8 393 38.9
Lalb_Chr04g0253581 Lupinus albus HOM05D004258 ORTHO05D005163 8.0e-67 258.8 397 40.1
Glyma.06G118300 Glycine max HOM05D004258 ORTHO05D005163 1.4e-66 258.1 401 39.7
Lalb_Chr11g0066231 Lupinus albus HOM05D004258 ORTHO05D005163 1.8e-66 257.7 484 37.2
Sabra05G0139100 Salix brachista HOM05D004258 ORTHO05D005163 2.3e-66 257.3 454 35.5
Sed0013187 Sechium edule HOM05D004258 ORTHO05D005163 6.8e-66 255.8 454 35.2
Hma1.2p1_0159F.1_g070350 Hydrangea macrophylla HOM05D004258 ORTHO05D005163 8.9e-66 255.4 398 37.4
Psat5g084240 Pisum sativum HOM05D004258 ORTHO05D005163 1.2e-65 255.0 406 37.7
Oeu047167.1 Olea europaea HOM05D004258 ORTHO05D005163 1.5e-65 254.6 392 36.7
GSVIVG01008795001 Vitis vinifera HOM05D004258 ORTHO05D005163 9.8e-65 251.9 400 36.2
Lalb_Chr17g0343571 Lupinus albus HOM05D004258 ORTHO05D005163 1.7e-64 251.1 446 35.9
Glyma.14G156600 Glycine max HOM05D004258 ORTHO05D005163 2.2e-64 250.8 402 38.1
Peaxi162Scf00066g00717 Petunia axillaris HOM05D004258 ORTHO05D005163 2.2e-64 250.8 397 38.3
Glyma.13G035400 Glycine max HOM05D004258 ORTHO05D005163 2.9e-64 250.4 402 38.3
EL10Ac1g01370 Beta vulgaris HOM05D004258 ORTHO05D005163 4.9e-64 249.6 396 36.4
Lalb_Chr10g0101471 Lupinus albus HOM05D004258 ORTHO05D005163 6.4e-64 249.2 401 37.7
Cc10_g13570 Coffea canephora HOM05D004258 ORTHO05D005163 1.4e-63 248.1 403 36.7
Dinv14709 Davidia involucrata HOM05D004258 ORTHO05D005163 1.4e-63 248.1 410 35.1
FAN15G0778 Fragaria x ananassa HOM05D004258 ORTHO05D005163 1.9e-63 247.7 415 38.3
FAN15G1038 Fragaria x ananassa HOM05D004258 ORTHO05D005163 1.9e-63 247.7 415 38.3
Sabra02G0060400 Salix brachista HOM05D004258 ORTHO05D005163 2.4e-63 247.3 414 36.0
FAN20G3077 Fragaria x ananassa HOM05D004258 ORTHO05D005163 3.2e-63 246.9 415 38.3
arahy.Tifrunner.gnm1.ann1.57F5XX Arachis hypogaea HOM05D004258 ORTHO05D005163 4.1e-63 246.5 401 37.7
Potri.005G183700 Populus trichocarpa HOM05D004258 ORTHO05D005163 5.4e-63 246.1 584 32.2
Potri.002G076900 Populus trichocarpa HOM05D004258 ORTHO05D005163 9.2e-63 245.4 463 34.8
MSTRG.22397 Avicennia marina HOM05D004258 ORTHO05D005163 1.6e-62 244.6 385 37.9
Nitab4.5_0002625g0020 Nicotiana tabacum HOM05D004258 ORTHO05D005163 3.5e-62 243.4 396 36.9
FAN24G0072 Fragaria x ananassa HOM05D004258 ORTHO05D005163 4.6e-62 243.0 431 36.7
MSTRG.25354 Avicennia marina HOM05D004258 ORTHO05D005163 1.0e-61 241.9 452 34.7
TPR.G6348 Trifolium pratense HOM05D004258 ORTHO05D005163 1.0e-61 241.9 522 33.1
arahy.Tifrunner.gnm1.ann1.D2PCJK Arachis hypogaea HOM05D004258 ORTHO05D005163 1.3e-61 241.5 401 37.2
Nitab4.5_0008327g0020 Nicotiana tabacum HOM05D004258 ORTHO05D005163 1.3e-61 241.5 427 35.6
Solyc04g058190.3 Solanum lycopersicum HOM05D004258 ORTHO05D005163 1.7e-61 241.1 404 36.6
Sc02g0004700 Simmondsia chinensis HOM05D004258 ORTHO05D005163 3.0e-61 240.4 407 36.1
Manes.02G169600 Manihot esculenta HOM05D004258 ORTHO05D005163 6.6e-61 239.2 481 34.9
CsaV3_7G022050 Cucumis sativus L. HOM05D004258 ORTHO05D005163 8.6e-61 238.8 454 33.7
MELO3C013235.2 Cucumis melo HOM05D004258 ORTHO05D005163 1.1e-60 238.4 454 33.3
FAN27G1652 Fragaria x ananassa HOM05D004258 ORTHO05D005163 1.9e-60 237.7 411 37.0
Sopen04g026090 Solanum pennellii HOM05D004258 ORTHO05D005163 2.5e-60 237.3 404 35.9
VMungo1309G2581 Vigna mungo HOM05D004258 ORTHO05D005163 3.3e-60 236.9 462 35.1
Sed0013494 Sechium edule HOM05D004258 ORTHO05D005163 1.6e-59 234.6 417 33.3
Oeu045955.1 Olea europaea HOM05D004258 ORTHO05D005163 6.2e-59 232.6 346 37.3
ClCG11G008920 Citrullus lanatus HOM05D004258 ORTHO05D005163 4.0e-58 229.9 456 32.7
DCAR_016655 Daucus carota HOM05D004258 ORTHO05D005163 4.0e-58 229.9 309 40.8
TAR628G1383 Trochodendron aralioides HOM05D004258 ORTHO05D005163 1.2e-57 228.4 529 31.8
HanXRQChr09g0256641 Helianthus annuus HOM05D004258 ORTHO05D005163 2.6e-57 227.3 375 34.7
PGR044G0336 Punica granatum HOM05D004258 ORTHO05D005163 5.8e-57 226.1 399 37.3
Migut.C01074 Erythranthe guttata HOM05D004258 ORTHO05D005163 1.7e-56 224.6 443 33.6
ECA232G4755 Erigeron canadensis HOM05D004258 ORTHO05D005163 2.9e-56 223.8 387 32.3
Cpa.g.sc64.156 Carica papaya HOM05D004258 ORTHO05D005163 6.4e-56 222.6 323 39.6
CAN.G46.10 Capsicum annuum HOM05D004258 ORTHO05D005163 8.3e-56 222.2 491 32.8
SGA_v2.0_scaffold28G11967 Striga asiatica HOM05D004258 ORTHO05D005163 7.1e-55 219.2 375 36.0
HanXRQChr15g0487241 Helianthus annuus HOM05D004258 ORTHO05D005163 4.6e-54 216.5 369 33.1
PSO528G0114 Papaver somniferum HOM05D004258 ORTHO05D005163 1.0e-53 215.3 391 33.5
PSO170G1843 Papaver somniferum HOM05D004258 ORTHO05D005163 1.3e-53 214.9 399 34.3
TWI32G0532 Tripterygium wilfordii HOM05D004258 ORTHO05D005163 2.3e-53 214.2 326 38.3
SGA_v2.0_scaffold25G11141 Striga asiatica HOM05D004258 ORTHO05D005163 3.0e-53 213.8 386 34.2
TAR381G0947 Trochodendron aralioides HOM05D004258 ORTHO05D005163 4.7e-51 206.5 428 33.4
Eucgr.L00408 Eucalyptus grandis HOM05D004258 ORTHO05D005163 1.8e-50 204.5 290 38.6
Hund26770 Selenicereus undatus HOM05D004258 ORTHO05D005163 3.1e-50 203.8 403 33.5
Lsat_1_v5_gn_4_134340 Lactuca sativa HOM05D004258 ORTHO05D005163 1.5e-49 201.4 411 30.7
Phvul.009G130800 Phaseolus vulgaris HOM05D004258 ORTHO05D005163 3.4e-49 200.3 346 37.0
Medtr3g088665 Medicago truncatula HOM05D004258 ORTHO05D005163 7.6e-49 199.1 433 31.9
CANSAT25G3602 Cannabis sativa HOM05D004258 ORTHO05D005163 9.9e-49 198.7 391 31.7
CDE06G0269 Ceratophyllum demersum HOM05D004258 ORTHO05D005163 1.9e-47 194.5 419 35.8
unitig_0.g2112 Utricularia gibba HOM05D004258 ORTHO05D005163 1.6e-46 191.4 371 34.0
PGSC0003DMG400018006 Solanum tuberosum HOM05D004258 ORTHO05D005163 3.9e-45 186.8 263 40.3
MBI03_g13503_MAGBIO Magnolia biondii HOM05D004258 ORTHO05D005163 5.1e-45 186.4 433 35.3
Eucgr.E03502 Eucalyptus grandis HOM05D004258 ORTHO05D005163 4.8e-43 179.9 205 42.0
AUR62007696 Chenopodium quinoa HOM05D004258 ORTHO05D005163 8.1e-43 179.1 291 36.1
AUR62013446 Chenopodium quinoa HOM05D004258 ORTHO05D005163 8.1e-43 179.1 304 35.5
Hma1.2p1_1935F.1_g308145 Hydrangea macrophylla HOM05D004258 ORTHO05D005163 1.8e-42 177.9 290 35.5
Aqoxy3G01754 Aquilegia oxysepala HOM05D004258 ORTHO05D005163 9.9e-41 172.2 519 28.7
Sabra05G0140400 Salix brachista HOM05D004258 ORTHO05D005163 9.9e-41 172.2 251 38.6
SHI09239 Sapria himalayana HOM05D004258 ORTHO05D005163 1.3e-40 171.8 398 30.7
Zm00001eb174450 Zea mays HOM05D004258 ORTHO05D005163 5.4e-39 166.4 340 32.1
DCAR_028202 Daucus carota HOM05D004258 ORTHO05D005163 1.6e-38 164.9 266 36.1
Lj4C663T10 Lonicera japonica HOM05D004258 ORTHO05D005163 1.1e-36 158.7 241 35.7
Os08g0105000 Oryza sativa ssp. japonica HOM05D004258 ORTHO05D005163 2.5e-36 157.5 361 31.0
Zm00001eb260200 Zea mays HOM05D004258 ORTHO05D005163 2.5e-36 157.5 340 31.8
ATR0820G108 Amborella trichopoda HOM05D004258 ORTHO05D005163 1.5e-33 148.3 356 29.8
HPP92_001075 Vanilla planifolia HOM05D004258 ORTHO05D005163 1.7e-32 144.8 463 25.9
Zm00001eb356650 Zea mays HOM05D004258 ORTHO05D005163 2.9e-32 144.1 447 28.2
CiPaw.15G030600 Carya illinoinensis HOM05D004258 ORTHO05D005163 4.2e-31 140.2 279 33.7
SEGI_07426 Sequoiadendron giganteum HOM05D004258 ORTHO05D005163 2.6e-25 120.9 433 23.1
SEGI_30620 Sequoiadendron giganteum HOM05D004258 ORTHO05D005163 7.6e-25 119.4 444 23.0
Lj7A352T22 Lonicera japonica HOM05D004258 ORTHO05D005163 2.7e-22 110.9 453 24.7
SEGI_25396 Sequoiadendron giganteum HOM05D004258 ORTHO05D005163 8.7e-21 105.9 215 28.4
SEGI_17891 Sequoiadendron giganteum HOM05D004258 ORTHO05D005163 1.9e-20 104.8 476 21.8
CDE08G1116 Ceratophyllum demersum HOM05D004258 ORTHO05D005163 7.4e-20 102.8 206 30.1
Eucgr.L03758 Eucalyptus grandis HOM05D004258 ORTHO05D005163 4.8e-19 100.1 133 42.9
Zm00001eb145630 Zea mays HOM05D004258 ORTHO05D005163 2.2e-16 91.3 84 51.2
Os01g0883400 Oryza sativa ssp. japonica HOM05D004258 ORTHO05D005163 9.3e-15 85.9 75 46.7
BcaC08g45482 Brassica carinata HOM05D004258 ORTHO05D005163 1.8e-13 81.6 88 64.8
Lj4A673G15 Lonicera japonica HOM05D004258 ORTHO05D005163 1.6e-11 75.1 200 28.0
Nn1g08938 Nelumbo nucifera HOM05D004258 ORTHO05D005163 8.2e-11 72.8 153 32.7
Nn5g28458 Nelumbo nucifera HOM05D004258 ORTHO05D005163 1.7e-08 65.1 149 28.2
DCAR_028203 Daucus carota HOM05D004258 ORTHO05D005163 2.9e-08 64.3 84 42.9
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 2.7e-06 57.8 52 42.3
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 2.7e-06 57.8 52 42.3
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 2.7e-06 57.8 60 38.3
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 2.7e-06 57.8 52 42.3
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 4.6e-06 57.0 59 35.6
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 6.1e-06 56.6 56 37.5
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 6.1e-06 56.6 47 42.6


User provided reference genes

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