Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45480 Brassica carinata HOM05D000787 ORTHO05D003730 5.3e-18 93.2 44 100.0
A07p28040 Brassica napus HOM05D000787 ORTHO05D003730 5.3e-18 93.2 44 100.0
C06p31310 Brassica napus HOM05D000787 ORTHO05D003730 5.3e-18 93.2 44 100.0
BolC6t38270H Brassica oleracea HOM05D000787 ORTHO05D003730 5.3e-18 93.2 44 100.0
BraA07t30448Z Brassica rapa HOM05D000787 ORTHO05D003730 5.3e-18 93.2 44 100.0
BcaB02g07103 Brassica carinata HOM05D000787 ORTHO05D003730 7.7e-17 89.4 44 95.5
A02p21220 Brassica napus HOM05D000787 ORTHO05D003730 2.9e-16 87.4 42 97.6
BraA02t07141Z Brassica rapa HOM05D000787 ORTHO05D003730 2.9e-16 87.4 42 97.6
BcaC03g15731 Brassica carinata HOM05D000787 ORTHO05D003730 8.5e-16 85.9 41 97.6
C02p34490 Brassica napus HOM05D000787 ORTHO05D003730 8.5e-16 85.9 41 97.6
BolC2t09479H Brassica oleracea HOM05D000787 ORTHO05D003730 8.5e-16 85.9 41 97.6
Sp5g32510 Schrenkiella parvula HOM05D000787 ORTHO05D003730 1.5e-15 85.1 44 88.6
Thhalv10018919m.g Eutrema salsugineum HOM05D000787 ORTHO05D003730 1.9e-15 84.7 42 92.9
BcaB05g25041 Brassica carinata HOM05D000787 ORTHO05D003730 7.2e-15 82.8 44 86.4
AT1G77330 Arabidopsis thaliana HOM05D000787 ORTHO05D003730 9.4e-15 82.4 41 92.7
A07p42870 Brassica napus HOM05D000787 ORTHO05D003730 9.4e-15 82.4 42 90.5
CARHR070820 Cardamine hirsuta HOM05D000787 ORTHO05D003730 9.4e-15 82.4 41 92.7
BcaB05g25040 Brassica carinata HOM05D000787 ORTHO05D003730 1.2e-14 82.0 42 90.5
AL2G37530 Arabidopsis lyrata HOM05D000787 ORTHO05D003730 2.7e-14 80.9 41 90.2
Carub.0002s2421 Capsella rubella HOM05D000787 ORTHO05D003730 1.8e-13 78.2 40 90.0
C06p51490 Brassica napus HOM05D000787 ORTHO05D003730 3.0e-13 77.4 42 85.7
BolC6t40167H Brassica oleracea HOM05D000787 ORTHO05D003730 3.0e-13 77.4 42 85.7
Aa31LG4G7360 Aethionema arabicum HOM05D000787 ORTHO05D003730 2.8e-11 70.9 41 85.4
BraA07t31808Z Brassica rapa HOM05D000787 ORTHO05D003730 4.8e-11 70.1 42 83.3
CSS0000425 Camellia sinensis var. sinensis HOM05D000787 ORTHO05D003730 9.1e-10 65.9 39 76.9
CSS0027544 Camellia sinensis var. sinensis HOM05D000787 ORTHO05D003730 9.1e-10 65.9 39 76.9
CSS0034471 Camellia sinensis var. sinensis HOM05D000787 ORTHO05D003730 9.1e-10 65.9 39 76.9
CSS0004829 Camellia sinensis var. sinensis HOM05D000787 ORTHO05D003730 1.2e-09 65.5 39 76.9
THA.LOC104812086 Tarenaya hassleriana HOM05D000787 ORTHO05D003730 7.7e-09 62.8 35 80.0
Actinidia29486 Actinidia chinensis HOM05D000787 ORTHO05D003730 2.9e-08 60.8 35 74.3
Atru.chr13.1558 Acer truncatum HOM05D000787 ORTHO05D003730 3.8e-08 60.5 35 74.3
Cpa.g.sc64.148 Carica papaya HOM05D000787 ORTHO05D003730 3.8e-08 60.5 32 78.1
Lj7C348T1 Lonicera japonica HOM05D000787 ORTHO05D003730 3.8e-08 60.5 36 72.2
Lj7C349T11 Lonicera japonica HOM05D000787 ORTHO05D003730 3.8e-08 60.5 36 72.2
ClCG11G015950 Citrullus lanatus HOM05D000787 ORTHO05D003730 6.5e-08 59.7 40 65.0
MELO3C010508.2 Cucumis melo HOM05D000787 ORTHO05D003730 6.5e-08 59.7 40 65.0
CsaV3_4G028040 Cucumis sativus L. HOM05D000787 ORTHO05D003730 6.5e-08 59.7 40 65.0
CsaV3_UNG115910 Cucumis sativus L. HOM05D000787 ORTHO05D003730 6.5e-08 59.7 40 65.0
Sed0002529 Sechium edule HOM05D000787 ORTHO05D003730 6.5e-08 59.7 34 70.6
CSS0031074 Camellia sinensis var. sinensis HOM05D000787 ORTHO05D003730 8.5e-08 59.3 36 69.4
Dinv14677 Davidia involucrata HOM05D000787 ORTHO05D003730 8.5e-08 59.3 35 71.4
Migut.N03262 Erythranthe guttata HOM05D000787 ORTHO05D003730 8.5e-08 59.3 36 72.2
MBI03_g28483_MAGBIO Magnolia biondii HOM05D000787 ORTHO05D003730 8.5e-08 59.3 37 67.6
Psat5g084920 Pisum sativum HOM05D000787 ORTHO05D003730 8.5e-08 59.3 44 56.8
TWI60G1646 Tripterygium wilfordii HOM05D000787 ORTHO05D003730 8.5e-08 59.3 33 75.8
Cfa018125 Carpinus fangiana HOM05D000787 ORTHO05D003730 1.1e-07 58.9 35 71.4
Cc10_g12720 Coffea canephora HOM05D000787 ORTHO05D003730 1.1e-07 58.9 39 66.7
DCAR_014440 Daucus carota HOM05D000787 ORTHO05D003730 1.1e-07 58.9 32 78.1
Manes.02G168000 Manihot esculenta HOM05D000787 ORTHO05D003730 1.1e-07 58.9 42 59.5
Manes.18G082100 Manihot esculenta HOM05D000787 ORTHO05D003730 1.1e-07 58.9 38 63.2
Sed0022023 Sechium edule HOM05D000787 ORTHO05D003730 1.1e-07 58.9 41 58.5
AUR62007720 Chenopodium quinoa HOM05D000787 ORTHO05D003730 1.5e-07 58.5 33 72.7
AUR62013422 Chenopodium quinoa HOM05D000787 ORTHO05D003730 1.5e-07 58.5 33 72.7
Ca_16605_v3 Cicer arietinum L. HOM05D000787 ORTHO05D003730 1.5e-07 58.5 32 78.1
FvH4_2g27800 Fragaria vesca HOM05D000787 ORTHO05D003730 1.5e-07 58.5 41 58.5
FAN24G0752 Fragaria x ananassa HOM05D000787 ORTHO05D003730 1.5e-07 58.5 41 58.5
Gohir.A02G110200 Gossypium hirsutum HOM05D000787 ORTHO05D003730 1.5e-07 58.5 35 71.4
Gohir.D02G078600 Gossypium hirsutum HOM05D000787 ORTHO05D003730 1.5e-07 58.5 38 65.8
Gorai.005G088000 Gossypium raimondii HOM05D000787 ORTHO05D003730 1.5e-07 58.5 38 65.8
Medtr3g088565 Medicago truncatula HOM05D000787 ORTHO05D003730 1.5e-07 58.5 32 78.1
RcHm_v2.0_Chr6g0296661 Rosa chinensis HOM05D000787 ORTHO05D003730 1.5e-07 58.5 41 61.0
Hund26776 Selenicereus undatus HOM05D000787 ORTHO05D003730 1.5e-07 58.5 40 65.0
TPR.G13459 Trifolium pratense HOM05D000787 ORTHO05D003730 1.5e-07 58.5 32 78.1
CiPaw.15G031900 Carya illinoinensis HOM05D000787 ORTHO05D003730 1.9e-07 58.2 35 68.6
Glyma.06G117200 Glycine max HOM05D000787 ORTHO05D003730 1.9e-07 58.2 35 68.6
Nn5g28432 Nelumbo nucifera HOM05D000787 ORTHO05D003730 1.9e-07 58.2 36 66.7
SalBow2G2360 Salvia bowleyana HOM05D000787 ORTHO05D003730 1.9e-07 58.2 40 67.5
SalBow7G3567 Salvia bowleyana HOM05D000787 ORTHO05D003730 1.9e-07 58.2 33 75.8
TAR376G0754 Trochodendron aralioides HOM05D000787 ORTHO05D003730 1.9e-07 58.2 40 65.0
TAR628G1084 Trochodendron aralioides HOM05D000787 ORTHO05D003730 1.9e-07 58.2 34 70.6
Zm00001eb418090 Zea mays HOM05D000787 ORTHO05D003730 1.9e-07 58.2 40 65.0
EL10Ac1g01343 Beta vulgaris HOM05D000787 ORTHO05D003730 2.5e-07 57.8 33 72.7
ECA246G0211 Erigeron canadensis HOM05D000787 ORTHO05D003730 2.5e-07 57.8 39 64.1
Eucgr.F03839 Eucalyptus grandis HOM05D000787 ORTHO05D003730 2.5e-07 57.8 32 78.1
Thecc.08G132600 Theobroma cacao HOM05D000787 ORTHO05D003730 2.5e-07 57.8 35 68.6
Actinidia15218 Actinidia chinensis HOM05D000787 ORTHO05D003730 3.2e-07 57.4 36 66.7
Cc10_g12710 Coffea canephora HOM05D000787 ORTHO05D003730 3.2e-07 57.4 36 69.4
COL.COLO4_08842 Corchorus olitorius HOM05D000787 ORTHO05D003730 3.2e-07 57.4 43 60.5
Duzib041G0586 Durio zibethinus HOM05D000787 ORTHO05D003730 3.2e-07 57.4 35 68.6
Duzib093G0135 Durio zibethinus HOM05D000787 ORTHO05D003730 3.2e-07 57.4 35 65.7
Glyma.04G245900 Glycine max HOM05D000787 ORTHO05D003730 3.2e-07 57.4 32 75.0
Gohir.D03G069001 Gossypium hirsutum HOM05D000787 ORTHO05D003730 3.2e-07 57.4 35 68.6
Gorai.013G107500 Gossypium raimondii HOM05D000787 ORTHO05D003730 3.2e-07 57.4 35 68.6
Phvul.009G129500 Phaseolus vulgaris HOM05D000787 ORTHO05D003730 3.2e-07 57.4 32 75.0
Potri.002G078600 Populus trichocarpa HOM05D000787 ORTHO05D003730 3.2e-07 57.4 39 64.1
Rhsim11G0068500 Rhododendron simsii HOM05D007230 ORTHO05D004756 3.2e-07 57.4 35 68.6
Rhsim11G0071100 Rhododendron simsii HOM05D000787 ORTHO05D003730 3.2e-07 57.4 35 68.6
Hund17338 Selenicereus undatus HOM05D000787 ORTHO05D003730 3.2e-07 57.4 33 72.7
vmacro00859 Vaccinium macrocarpon HOM05D000787 ORTHO05D003730 3.2e-07 57.4 35 68.6
VMungo1309G0387 Vigna mungo HOM05D000787 ORTHO05D003730 3.2e-07 57.4 32 75.0
Actinidia21283 Actinidia chinensis HOM05D000787 ORTHO05D003730 4.2e-07 57.0 36 66.7
Gohir.A02G071400 Gossypium hirsutum HOM05D000787 ORTHO05D003730 4.2e-07 57.0 38 63.2
SalBow7G3734 Salvia bowleyana HOM05D000787 ORTHO05D003730 4.2e-07 57.0 33 72.7
SalBow7G3767 Salvia bowleyana HOM05D000787 ORTHO05D003730 4.2e-07 57.0 33 72.7
Zm00001eb418130 Zea mays HOM05D000787 ORTHO05D003730 4.2e-07 57.0 39 66.7
CiPaw.15G031600 Carya illinoinensis HOM05D000787 ORTHO05D003730 5.5e-07 56.6 32 71.9
Ciclev10001927m.g Citrus clementina HOM05D000787 ORTHO05D003730 5.5e-07 56.6 32 75.0
FAN15G0494 Fragaria x ananassa HOM05D000787 ORTHO05D003730 5.5e-07 56.6 40 57.5
FAN20G2693 Fragaria x ananassa HOM05D000787 ORTHO05D003730 5.5e-07 56.6 40 57.5
FAN27G1808 Fragaria x ananassa HOM05D000787 ORTHO05D003730 5.5e-07 56.6 40 57.5
Sed0026245 Sechium edule HOM05D000787 ORTHO05D003730 5.5e-07 56.6 37 59.5
TAR223G0001 Trochodendron aralioides HOM05D000787 ORTHO05D003730 5.5e-07 56.6 35 68.6
TAR376G0918 Trochodendron aralioides HOM05D000787 ORTHO05D003730 5.5e-07 56.6 35 68.6
Zm00001eb418140 Zea mays HOM05D000787 ORTHO05D003730 5.5e-07 56.6 39 66.7
CiPaw.16G023100 Carya illinoinensis HOM05D000787 ORTHO05D003730 7.2e-07 56.2 35 65.7
Lj4A682T57 Lonicera japonica HOM05D000787 ORTHO05D003730 7.2e-07 56.2 35 65.7
Potri.005G182700 Populus trichocarpa HOM05D000787 ORTHO05D003730 7.2e-07 56.2 45 60.0
QL09p032570 Quercus lobata HOM05D000787 ORTHO05D003730 7.2e-07 56.2 35 68.6
Sabra02G0061500 Salix brachista HOM05D000787 ORTHO05D003730 7.2e-07 56.2 38 60.5
Nn1g08965 Nelumbo nucifera HOM05D000787 ORTHO05D003730 9.4e-07 55.8 32 75.0
Oeu051975.1 Olea europaea HOM05D000787 ORTHO05D003730 9.4e-07 55.8 29 79.3
Peaxi162Scf00066g00009 Petunia axillaris HOM05D000787 ORTHO05D003730 9.4e-07 55.8 40 60.0
CANSAT25G1960 Cannabis sativa HOM05D000787 ORTHO05D003730 1.2e-06 55.5 28 82.1
HanXRQChr05g0149301 Helianthus annuus HOM05D000787 ORTHO05D003730 1.2e-06 55.5 29 79.3
Lsat_1_v5_gn_6_110060 Lactuca sativa HOM05D000787 ORTHO05D003730 1.2e-06 55.5 30 73.3
Lj7C350T5 Lonicera japonica HOM05D000787 ORTHO05D003730 1.2e-06 55.5 35 65.7
Lj1g0023012 Lotus japonicus HOM05D000787 ORTHO05D003730 1.2e-06 55.5 32 71.9
MBI06_g35208_MAGBIO Magnolia biondii HOM05D000787 ORTHO05D003730 1.2e-06 55.5 28 82.1
Nitab4.5_0006116g0010 Nicotiana tabacum HOM05D000787 ORTHO05D003730 1.2e-06 55.5 31 71.0
PGR042G3180 Punica granatum HOM05D000787 ORTHO05D003730 1.2e-06 55.5 35 62.9
GSVIVG01008811001 Vitis vinifera HOM05D000787 ORTHO05D003730 1.2e-06 55.5 32 75.0
HanXRQChr05g0149321 Helianthus annuus HOM05D000787 ORTHO05D003730 1.6e-06 55.1 32 68.8
HanXRQChr11g0334761 Helianthus annuus HOM05D000787 ORTHO05D003730 1.6e-06 55.1 29 79.3
Sc02g0004770 Simmondsia chinensis HOM05D000787 ORTHO05D003730 1.6e-06 55.1 32 71.9
arahy.Tifrunner.gnm1.ann1.1X31DU Arachis hypogaea HOM05D000787 ORTHO05D003730 2.1e-06 54.7 31 74.2
arahy.Tifrunner.gnm1.ann1.Y5BWXR Arachis hypogaea HOM05D000787 ORTHO05D003730 2.1e-06 54.7 31 74.2
Lsat_1_v5_gn_6_110021 Lactuca sativa HOM05D000787 ORTHO05D003730 2.1e-06 54.7 36 61.1
MD08G1160900 Malus domestica HOM05D000787 ORTHO05D003730 2.1e-06 54.7 32 68.8
Nitab4.5_0001168g0160 Nicotiana tabacum HOM05D000787 ORTHO05D003730 2.1e-06 54.7 39 61.5
Nitab4.5_0002045g0080 Nicotiana tabacum HOM05D000787 ORTHO05D003730 2.1e-06 54.7 39 61.5
Os05g0149400 Oryza sativa ssp. japonica HOM05D000787 ORTHO05D003730 2.1e-06 54.7 40 62.5
Peaxi162Scf00051g00207 Petunia axillaris HOM05D000787 ORTHO05D003730 2.1e-06 54.7 29 75.9
SGA_v2.0_scaffold28G11972 Striga asiatica HOM05D000787 ORTHO05D003730 2.1e-06 54.7 38 60.5
HPP92_004450 Vanilla planifolia HOM05D000787 ORTHO05D003730 2.1e-06 54.7 38 63.2
HPP92_004451 Vanilla planifolia HOM05D000787 ORTHO05D003730 2.1e-06 54.7 38 63.2
CAN.G526.13 Capsicum annuum HOM05D000787 ORTHO05D003730 2.7e-06 54.3 35 65.7
Duzib116G0015 Durio zibethinus HOM05D000787 ORTHO05D003730 2.7e-06 54.3 35 62.9
Sabra05G0138500 Salix brachista HOM05D000787 ORTHO05D003730 2.7e-06 54.3 39 59.0
Migut.C01063 Erythranthe guttata HOM05D000787 ORTHO05D003730 3.6e-06 53.9 32 71.9
Hma1.2p1_0420F.1_g149650 Hydrangea macrophylla HOM05D000787 ORTHO05D003730 3.6e-06 53.9 27 81.5
Lalb_Chr08g0241131 Lupinus albus HOM05D000787 ORTHO05D003730 3.6e-06 53.9 32 71.9
SEGI_34379 Sequoiadendron giganteum HOM05D000787 ORTHO05D003730 3.6e-06 53.9 31 67.7
SGA_v2.0_scaffold24G10425 Striga asiatica HOM05D000787 ORTHO05D003730 3.6e-06 53.9 29 75.9
Eucgr.K00747 Eucalyptus grandis HOM05D000787 ORTHO05D001019 4.7e-06 53.5 43 55.8
Eucgr.K00749 Eucalyptus grandis HOM05D000787 ORTHO05D001019 4.7e-06 53.5 43 55.8
Lj7C349T10 Lonicera japonica HOM05D000787 ORTHO05D003730 4.7e-06 53.5 41 56.1
HPP92_004447 Vanilla planifolia HOM05D000787 ORTHO05D003730 4.7e-06 53.5 33 69.7
Lsat_1_v5_gn_6_110120 Lactuca sativa HOM05D000787 ORTHO05D003730 6.1e-06 53.1 39 56.4
Nitab4.5_0003240g0040 Nicotiana tabacum HOM05D000787 ORTHO05D003730 6.1e-06 53.1 32 68.8
ATR0584G035 Amborella trichopoda HOM05D000787 ORTHO05D003730 8.0e-06 52.8 29 75.9
Gohir.A02G071300 Gossypium hirsutum HOM05D000787 ORTHO05D003730 8.0e-06 52.8 32 71.9
Gohir.D02G078400 Gossypium hirsutum HOM05D000787 ORTHO05D003730 8.0e-06 52.8 32 71.9
Gorai.005G087900 Gossypium raimondii HOM05D000787 ORTHO05D003730 8.0e-06 52.8 32 71.9
Oeu021886.1 Olea europaea HOM05D000787 ORTHO05D003730 8.0e-06 52.8 29 75.9
Oeu025057.1 Olea europaea HOM05D000787 ORTHO05D003730 8.0e-06 52.8 29 75.9
Peaxi162Scf01096g00025 Petunia axillaris HOM05D000787 ORTHO05D001019 8.0e-06 52.8 40 60.0
HPP92_004446 Vanilla planifolia HOM05D000787 ORTHO05D003730 8.0e-06 52.8 38 60.5


User provided reference genes

Program Settings