Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45458 Brassica carinata HOM05D005652 ORTHO05D007300 3.6e-45 184.5 91 100.0
A07p27870 Brassica napus HOM05D005652 ORTHO05D007300 3.6e-45 184.5 91 100.0
C06p30860 Brassica napus HOM05D005652 ORTHO05D007300 3.6e-45 184.5 91 100.0
BolC6t38248H Brassica oleracea HOM05D005652 ORTHO05D007300 3.6e-45 184.5 91 100.0
BraA07t30426Z Brassica rapa HOM05D005652 ORTHO05D007300 3.6e-45 184.5 91 100.0
BcaB02g07127 Brassica carinata HOM05D005652 ORTHO05D007300 4.8e-45 184.1 90 100.0
Aa31LG4G7830 Aethionema arabicum HOM05D005652 ORTHO05D007300 5.3e-44 180.6 89 100.0
BcaC03g15763 Brassica carinata HOM05D005652 ORTHO05D007300 5.3e-44 180.6 89 100.0
Sp5g32880 Schrenkiella parvula HOM05D005652 ORTHO05D007300 5.3e-44 180.6 89 100.0
BcaB05g25069 Brassica carinata HOM05D005652 ORTHO05D007300 1.2e-43 179.5 91 98.9
Thhalv10019370m.g Eutrema salsugineum HOM05D005652 ORTHO05D007300 1.2e-43 179.5 89 98.9
AT1G77710 Arabidopsis thaliana HOM05D005652 ORTHO05D007300 1.5e-43 179.1 89 98.9
CARHR071220 Cardamine hirsuta HOM05D005652 ORTHO05D007300 2.6e-43 178.3 88 100.0
Carub.0002s2459 Capsella rubella HOM05D005652 ORTHO05D007300 3.4e-43 177.9 88 100.0
AL2G37930 Arabidopsis lyrata HOM05D005652 ORTHO05D007300 1.3e-42 176.0 90 98.9
THA.LOC104817112 Tarenaya hassleriana HOM05D005652 ORTHO05D007300 2.2e-42 175.3 88 97.7
Atru.chr13.1343 Acer truncatum HOM05D005652 ORTHO05D007300 4.9e-42 174.1 88 96.6
THA.LOC104813142 Tarenaya hassleriana HOM05D005652 ORTHO05D007300 6.4e-42 173.7 87 97.7
Ciclev10002945m.g Citrus clementina HOM05D005652 ORTHO05D007300 1.4e-41 172.6 88 95.5
Lj1g0016776 Lotus japonicus HOM05D005652 ORTHO05D007300 1.4e-41 172.6 88 95.5
Duzib041G0199 Durio zibethinus HOM05D005652 ORTHO05D007300 1.9e-41 172.2 87 96.6
Duzib093G1773 Durio zibethinus HOM05D005652 ORTHO05D007300 1.9e-41 172.2 87 96.6
Glyma.14G163800 Glycine max HOM05D005652 ORTHO05D007300 1.9e-41 172.2 87 96.6
Gohir.A06G041900 Gossypium hirsutum HOM05D005652 ORTHO05D007300 1.9e-41 172.2 87 96.6
Gohir.D06G042900 Gossypium hirsutum HOM05D005652 ORTHO05D007300 1.9e-41 172.2 87 96.6
Gorai.005G091100 Gossypium raimondii HOM05D005652 ORTHO05D007300 1.9e-41 172.2 87 96.6
Gorai.010G048100 Gossypium raimondii HOM05D005652 ORTHO05D007300 1.9e-41 172.2 87 96.6
Thecc.08G119900 Theobroma cacao HOM05D005652 ORTHO05D007300 1.9e-41 172.2 87 96.6
Potri.002G087200 Populus trichocarpa HOM05D005652 ORTHO05D007300 2.4e-41 171.8 88 95.5
Sabra02G0068700 Salix brachista HOM05D005652 ORTHO05D007300 2.4e-41 171.8 88 95.5
CANSAT54G2625 Cannabis sativa HOM05D005652 ORTHO05D007300 3.2e-41 171.4 88 95.5
Lalb_Chr08g0241571 Lupinus albus HOM05D005652 ORTHO05D007300 3.2e-41 171.4 88 95.5
Lalb_Chr23g0270881 Lupinus albus HOM05D005652 ORTHO05D007300 3.2e-41 171.4 88 95.5
Aqoxy6G01736 Aquilegia oxysepala HOM05D005652 ORTHO05D007300 4.2e-41 171.0 87 95.4
Ca_19025_v3 Cicer arietinum L. HOM05D005652 ORTHO05D007300 4.2e-41 171.0 88 94.3
Ca_26775_v3 Cicer arietinum L. HOM05D005652 ORTHO05D007300 4.2e-41 171.0 88 94.3
Glyma.04G252400 Glycine max HOM05D005652 ORTHO05D007300 4.2e-41 171.0 87 96.6
Glyma.06G110100 Glycine max HOM05D005652 ORTHO05D007300 4.2e-41 171.0 87 96.6
HanXRQChr14g0432351 Helianthus annuus HOM05D005652 ORTHO05D007300 4.2e-41 171.0 89 96.6
MD08G1169400 Malus domestica HOM05D005652 ORTHO05D007300 4.2e-41 171.0 87 96.6
MD15G1356000 Malus domestica HOM05D005652 ORTHO05D007300 4.2e-41 171.0 87 96.6
Phvul.009G121900 Phaseolus vulgaris HOM05D005652 ORTHO05D007300 4.2e-41 171.0 87 96.6
RcHm_v2.0_Chr6g0294951 Rosa chinensis HOM05D005652 ORTHO05D007300 4.2e-41 171.0 87 96.6
CDE06G1598 Ceratophyllum demersum HOM05D005652 ORTHO05D007300 5.4e-41 170.6 86 96.5
CDE08G1473 Ceratophyllum demersum HOM05D005652 ORTHO05D007300 5.4e-41 170.6 86 96.5
ClCG03G009400 Citrullus lanatus HOM05D005652 ORTHO05D007300 5.4e-41 170.6 87 96.6
MELO3C003038.2 Cucumis melo HOM05D005652 ORTHO05D007300 5.4e-41 170.6 87 96.6
CsaV3_5G023210 Cucumis sativus L. HOM05D005652 ORTHO05D007300 5.4e-41 170.6 87 96.6
MBI09_g06382_MAGBIO Magnolia biondii HOM05D005652 ORTHO05D007300 5.4e-41 170.6 84 98.8
Sed0000902 Sechium edule HOM05D005652 ORTHO05D007300 5.4e-41 170.6 87 96.6
Gohir.A02G074200 Gossypium hirsutum HOM05D005652 ORTHO05D007300 7.1e-41 170.2 87 95.4
Lsat_1_v5_gn_5_65281 Lactuca sativa HOM05D005652 ORTHO05D007300 7.1e-41 170.2 87 95.4
FAN20G1151 Fragaria x ananassa HOM05D005652 ORTHO05D007300 9.3e-41 169.9 87 95.4
FAN24G1202 Fragaria x ananassa HOM05D000102 ORTHO05D003793 9.3e-41 169.9 87 95.4
FAN27G1241 Fragaria x ananassa HOM05D005652 ORTHO05D007300 9.3e-41 169.9 87 95.4
Nitab4.5_0000030g0080 Nicotiana tabacum HOM05D005652 ORTHO05D007300 9.3e-41 169.9 88 94.3
Nitab4.5_0013867g0020 Nicotiana tabacum HOM05D005652 ORTHO05D007300 9.3e-41 169.9 88 93.2
Prupe.1G503300 Prunus persica HOM05D005652 ORTHO05D007300 9.3e-41 169.9 87 95.4
CSS0012578 Camellia sinensis var. sinensis HOM05D005652 ORTHO05D007300 1.2e-40 169.5 89 95.5
Potri.005G173800 Populus trichocarpa HOM05D005652 ORTHO05D007300 1.2e-40 169.5 88 94.3
Dinv27358 Davidia involucrata HOM05D005652 ORTHO05D007300 1.6e-40 169.1 86 95.3
Oeu050889.1 Olea europaea HOM05D005652 ORTHO05D007300 1.6e-40 169.1 86 96.5
Peaxi162Scf00408g00839 Petunia axillaris HOM05D005652 ORTHO05D007300 1.6e-40 169.1 86 95.3
TWI56G0667 Tripterygium wilfordii HOM05D005652 ORTHO05D007300 1.6e-40 169.1 86 96.5
arahy.Tifrunner.gnm1.ann1.AJPJ4J Arachis hypogaea HOM05D005652 ORTHO05D007300 2.1e-40 168.7 85 96.5
MSTRG.22423 Avicennia marina HOM05D005652 ORTHO05D007300 2.1e-40 168.7 86 95.3
CiPaw.05G226800 Carya illinoinensis HOM05D005652 ORTHO05D007300 2.1e-40 168.7 85 96.5
FvH4_2g26390 Fragaria vesca HOM05D005652 ORTHO05D007300 2.1e-40 168.7 87 94.3
Gohir.D02G081400 Gossypium hirsutum HOM05D005652 ORTHO05D007300 2.1e-40 168.7 87 95.4
Hma1.2p1_0009F.1_g006210 Hydrangea macrophylla HOM05D005652 ORTHO05D007300 2.1e-40 168.7 85 96.5
Medtr5g059210 Medicago truncatula HOM05D005652 ORTHO05D007300 2.1e-40 168.7 85 96.5
Psat2g096080 Pisum sativum HOM05D005652 ORTHO05D007300 2.1e-40 168.7 85 96.5
PGR042G1865 Punica granatum HOM05D005652 ORTHO05D007300 2.1e-40 168.7 85 96.5
Cc06_g19090 Coffea canephora HOM05D005652 ORTHO05D007300 2.7e-40 168.3 84 97.6
Manes.18G074500 Manihot esculenta HOM05D005652 ORTHO05D007300 2.7e-40 168.3 84 97.6
Nn5g28127 Nelumbo nucifera HOM05D005652 ORTHO05D007300 2.7e-40 168.3 84 97.6
Nitab4.5_0000943g0120 Nicotiana tabacum HOM05D005652 ORTHO05D007300 2.7e-40 168.3 84 97.6
Solyc12g096120.2 Solanum lycopersicum HOM05D005652 ORTHO05D007300 2.7e-40 168.3 84 97.6
Sopen12g032000 Solanum pennellii HOM05D005652 ORTHO05D007300 2.7e-40 168.3 84 97.6
PGSC0003DMG400029291 Solanum tuberosum HOM05D005652 ORTHO05D007300 2.7e-40 168.3 84 97.6
PGSC0003DMG400030853 Solanum tuberosum HOM05D005652 ORTHO05D007300 2.7e-40 168.3 84 97.6
TWI12G1472 Tripterygium wilfordii HOM05D005652 ORTHO05D007300 2.7e-40 168.3 84 97.6
GSVIVG01008919001 Vitis vinifera HOM05D005652 ORTHO05D007300 2.7e-40 168.3 84 97.6
Oeu050252.1 Olea europaea HOM05D005652 ORTHO05D007300 3.5e-40 167.9 86 95.3
SalBow7G3105 Salvia bowleyana HOM05D005652 ORTHO05D007300 3.5e-40 167.9 84 96.4
Hund16832 Selenicereus undatus HOM05D005652 ORTHO05D007300 3.5e-40 167.9 84 96.4
ATR0041G005 Amborella trichopoda HOM05D005652 ORTHO05D007300 4.6e-40 167.5 84 97.6
TPR.G8501 Trifolium pratense HOM05D005652 ORTHO05D007300 4.6e-40 167.5 85 95.3
TAR376G0464 Trochodendron aralioides HOM05D005652 ORTHO05D007300 4.6e-40 167.5 85 95.3
Pp3c6_16720 Physcomitrium patens HOM05D005652 ORTHO05D007300 6.0e-40 167.2 88 92.0
Sc23g0000830 Simmondsia chinensis HOM05D005652 ORTHO05D007300 6.0e-40 167.2 84 96.4
Migut.N03303 Erythranthe guttata HOM05D005652 ORTHO05D007300 7.9e-40 166.8 86 95.3
PSO528G0083 Papaver somniferum HOM05D005652 ORTHO05D007300 7.9e-40 166.8 86 94.2
Peaxi162Scf00876g00433 Petunia axillaris HOM05D005652 ORTHO05D007300 7.9e-40 166.8 85 95.3
Hund27043 Selenicereus undatus HOM05D005652 ORTHO05D007300 7.9e-40 166.8 84 95.2
Solyc08g075780.4 Solanum lycopersicum HOM05D005652 ORTHO05D007300 7.9e-40 166.8 85 95.3
arahy.Tifrunner.gnm1.ann1.KZ1VTZ Arachis hypogaea HOM05D005652 ORTHO05D007300 1.0e-39 166.4 85 95.3
CAN.G1483.5 Capsicum annuum HOM05D005652 ORTHO05D007300 1.0e-39 166.4 84 96.4
ECA238G1260 Erigeron canadensis HOM05D005652 ORTHO05D007300 1.0e-39 166.4 83 97.6
PSO170G5049 Papaver somniferum HOM05D005652 ORTHO05D007300 1.0e-39 166.4 85 95.3
unitig_37.g12684 Utricularia gibba HOM05D005652 ORTHO05D007300 1.0e-39 166.4 84 96.4
Nitab4.5_0014082g0020 Nicotiana tabacum HOM05D005652 ORTHO05D007300 1.3e-39 166.0 83 97.6
EL10Ac1g00017 Beta vulgaris HOM05D005652 ORTHO05D007300 1.8e-39 165.6 86 93.0
Ah.05g172270 Amaranthus hybridus HOM05D005652 ORTHO05D007300 2.3e-39 165.2 86 93.0
Zm00001eb140360 Zea mays HOM05D005652 ORTHO05D007300 3.0e-39 164.9 84 95.2
Haze_00495 Corylus avellana HOM05D000102 ORTHO05D003793 5.1e-39 164.1 96 86.5
MSTRG.1473 Avicennia marina HOM05D005652 ORTHO05D007300 8.7e-39 163.3 82 97.6
Eucgr.F03755 Eucalyptus grandis HOM05D005652 ORTHO05D007300 8.7e-39 163.3 82 97.6
Os01g0962400 Oryza sativa ssp. japonica HOM05D005652 ORTHO05D007300 8.7e-39 163.3 83 95.2
AagrBONN_evm.TU.Sc2ySwM_362.1619 Anthoceros agrestis HOM05D005652 ORTHO05D007300 1.9e-38 162.2 86 89.5
Mapoly0081s0039 Marchantia polymorpha HOM05D005652 ORTHO05D007300 2.5e-38 161.8 84 92.9
SGA_v2.0_scaffold24G10489 Striga asiatica HOM05D005652 ORTHO05D007300 2.5e-38 161.8 81 97.5
Migut.C01167 Erythranthe guttata HOM05D005652 ORTHO05D007300 9.6e-38 159.8 82 95.1
CBR_g44443 Chara braunii HOM05D005652 ORTHO05D007300 1.6e-37 159.1 82 93.9
SMO147G0269 Selaginella moellendorffii HOM05D005652 ORTHO05D007300 1.8e-36 155.6 83 90.4
FAN15G0151 Fragaria x ananassa HOM05D000102 ORTHO05D003793 6.9e-36 153.7 111 73.9
Actinidia02604 Actinidia chinensis HOM05D005652 ORTHO05D007300 7.6e-35 150.2 102 77.5
Haze_27250 Corylus avellana HOM05D005652 ORTHO05D007300 1.1e-30 136.3 82 76.8
PRCOL_00001930 Prasinoderma coloniale HOM05D005652 ORTHO05D007300 8.2e-29 130.2 81 82.7
QL09p036189 Quercus lobata HOM05D005652 ORTHO05D007300 1.1e-28 129.8 175 46.9
CAN.G947.38 Capsicum annuum HOM05D005652 ORTHO05D007300 1.4e-28 129.4 66 93.9
Rhsim11G0066600 Rhododendron simsii HOM05D005652 ORTHO05D007300 1.8e-28 129.0 64 96.9
Oeu026729.1 Olea europaea HOM05D005652 ORTHO05D007300 4.0e-28 127.9 66 95.5
AUR62023629 Chenopodium quinoa HOM05D000102 ORTHO05D003793 6.9e-28 127.1 63 96.8
Glyma.13G082800 Glycine max HOM05D005652 ORTHO05D007300 9.0e-28 126.7 65 93.8
SalBow7G1395 Salvia bowleyana HOM05D005652 ORTHO05D007300 2.2e-26 122.1 62 95.2
HPP92_028057 Vanilla planifolia HOM05D005652 ORTHO05D007300 7.1e-25 117.1 79 78.5
Cpa.g.sc36.14 Carica papaya HOM05D005652 ORTHO05D007300 6.7e-23 110.5 65 89.2
COL.COLO4_38344 Corchorus olitorius HOM05D005652 ORTHO05D007300 2.5e-22 108.6 55 98.2
BraA02t07181Z Brassica rapa HOM05D005652 ORTHO05D007300 5.7e-22 107.5 67 82.1
AUR62004713 Chenopodium quinoa HOM05D005652 ORTHO05D007300 1.4e-20 102.8 52 96.2
BolC2t09520H Brassica oleracea HOM05D005652 ORTHO05D007300 5.3e-20 100.9 48 97.9
Oeu062544.1 Olea europaea HOM05D005652 ORTHO05D007300 1.5e-19 99.4 62 83.9
Sed0022236 Sechium edule HOM05D005652 ORTHO05D007300 1.0e-18 96.7 90 63.3
Actinidia13808 Actinidia chinensis HOM05D005652 ORTHO05D007300 1.9e-17 92.4 50 90.0
AagrBONN_evm.TU.Sc2ySwM_344.240 Anthoceros agrestis HOM05D005652 ORTHO05D007300 1.2e-11 73.2 42 83.3
TAR381G0412 Trochodendron aralioides HOM05D000102 ORTHO05D003793 1.6e-08 62.8 32 93.8
Dinv20715 Davidia involucrata HOM05D005652 ORTHO05D185765 5.1e-07 57.8 39 76.9
Actinidia03505 Actinidia chinensis HOM05D005652 ORTHO05D054027 1.5e-06 56.2 71 49.3
Actinidia34351 Actinidia chinensis HOM05D005652 ORTHO05D057191 7.4e-06 53.9 32 78.1


User provided reference genes

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