Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p30330 Brassica napus HOM05D005772 ORTHO05D006468 2.6e-102 375.6 214 100.0
BolC6t38196H Brassica oleracea HOM05D005772 ORTHO05D006468 2.6e-102 375.6 214 100.0
BraA07t30382Z Brassica rapa HOM05D005772 ORTHO05D006468 1.8e-95 352.8 213 88.7
A07p27410 Brassica napus HOM05D005772 ORTHO05D006468 3.1e-95 352.1 213 87.8
BcaB02g07187 Brassica carinata HOM05D005772 ORTHO05D006468 1.8e-90 336.3 207 87.9
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 6.7e-90 334.3 190 99.5
Sp5g33960 Schrenkiella parvula HOM05D005772 ORTHO05D006468 5.1e-82 308.1 217 78.3
CARHR072530 Cardamine hirsuta HOM05D005772 ORTHO05D006468 8.5e-69 264.2 209 69.9
AT1G78922 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 5.5e-68 261.5 225 74.7
Carub.0002s2577 Capsella rubella HOM05D005772 ORTHO05D006468 1.8e-66 256.5 210 75.7
Aa31LG4G2060 Aethionema arabicum HOM05D005772 ORTHO05D006468 5.0e-61 238.4 221 62.0
AL2G39360 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 1.7e-45 186.8 107 86.9
Potri.007G001400 Populus trichocarpa HOM05D005772 ORTHO05D006468 1.1e-36 157.5 208 44.2
THA.LOC104813627 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 1.9e-36 156.8 265 45.7
Ciclev10013938m.g Citrus clementina HOM05D005772 ORTHO05D006468 5.6e-36 155.2 216 43.5
Ciclev10013939m.g Citrus clementina HOM05D005772 ORTHO05D006468 5.6e-36 155.2 216 43.5
Sabra07G0001200 Salix brachista HOM05D005772 ORTHO05D006468 2.1e-35 153.3 199 44.2
TWI18G0423 Tripterygium wilfordii HOM05D005772 ORTHO05D006468 2.1e-35 153.3 203 44.3
Cfa003428 Carpinus fangiana HOM05D005772 ORTHO05D006468 4.0e-34 149.1 221 48.4
PGR031G3661 Punica granatum HOM05D005772 ORTHO05D006468 6.8e-34 148.3 211 42.7
Ciclev10013941m.g Citrus clementina HOM05D005772 ORTHO05D006468 2.0e-33 146.7 205 43.9
QL06p046996 Quercus lobata HOM05D005772 ORTHO05D006468 2.2e-32 143.3 146 50.7
CiPaw.02G128300 Carya illinoinensis HOM05D005772 ORTHO05D006468 3.7e-32 142.5 207 40.1
Medtr0032s0080 Medicago truncatula HOM05D005772 ORTHO05D006468 6.4e-32 141.7 214 41.1
Thecc.06G054300 Theobroma cacao HOM05D005772 ORTHO05D006468 3.2e-31 139.4 206 47.1
PSO063G1689 Papaver somniferum HOM05D005772 ORTHO05D006468 5.4e-31 138.7 131 54.2
CiPaw.01G207400 Carya illinoinensis HOM05D005772 ORTHO05D006468 7.0e-31 138.3 219 42.0
Lj3g0026748 Lotus japonicus HOM05D005772 ORTHO05D006468 9.2e-31 137.9 200 43.5
Potri.007G001650 Populus trichocarpa HOM05D005772 ORTHO05D006468 1.2e-30 137.5 112 56.2
MD04G1024200 Malus domestica HOM05D005772 ORTHO05D006468 2.7e-30 136.3 208 41.8
RcHm_v2.0_Chr2g0149081 Rosa chinensis HOM05D005772 ORTHO05D006468 4.6e-30 135.6 216 41.2
PSO170G5960 Papaver somniferum HOM05D005772 ORTHO05D006468 7.8e-30 134.8 216 40.7
HPP92_009982 Vanilla planifolia HOM05D005772 ORTHO05D006468 1.3e-29 134.0 193 41.5
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 3.9e-29 132.5 203 46.8
CSS0023973 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 6.6e-29 131.7 124 50.8
MBI06_g27497_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 6.6e-29 131.7 218 43.1
Rhsim08G0251400 Rhododendron simsii HOM05D000927 ORTHO05D000850 8.6e-29 131.3 148 48.6
Aqoxy2G03016 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 1.1e-28 131.0 218 37.6
Prupe.3G025100 Prunus persica HOM05D005772 ORTHO05D006468 1.1e-28 131.0 208 40.4
Nn8g41076 Nelumbo nucifera HOM05D005772 ORTHO05D006468 1.5e-28 130.6 226 38.1
CANSAT01G3073 Cannabis sativa HOM05D005772 ORTHO05D006468 3.3e-28 129.4 230 42.2
FAN09G4514 Fragaria x ananassa HOM05D005772 ORTHO05D006468 3.3e-28 129.4 215 39.5
FAN14G5951 Fragaria x ananassa HOM05D005772 ORTHO05D006468 1.2e-27 127.5 210 39.5
TAR625G1307 Trochodendron aralioides HOM05D005772 ORTHO05D006468 1.2e-27 127.5 208 38.9
FAN02G1413 Fragaria x ananassa HOM05D005772 ORTHO05D006468 2.8e-27 126.3 210 39.0
Oeu038376.1 Olea europaea HOM05D005772 ORTHO05D006468 1.1e-26 124.4 115 47.8
CSS0004874 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 3.4e-25 119.4 141 48.2
Manes.14G007000 Manihot esculenta HOM05D005772 ORTHO05D006468 3.4e-25 119.4 204 37.3
vmacro10401 Vaccinium macrocarpon HOM05D005772 ORTHO05D006468 7.5e-25 118.2 138 44.9
TPR.G38724 Trifolium pratense HOM05D003324 ORTHO05D006468 7.8e-22 108.2 185 38.9
Gohir.D05G239100 Gossypium hirsutum HOM05D005772 ORTHO05D006468 4.7e-19 99.0 152 37.5
MBI06_g44579_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 6.2e-19 98.6 128 40.6
Gohir.A05G237000 Gossypium hirsutum HOM05D005772 ORTHO05D006468 8.1e-19 98.2 152 36.8
Gorai.009G247900 Gossypium raimondii HOM05D005772 ORTHO05D006468 1.1e-18 97.8 152 36.8
Migut.E00857 Erythranthe guttata HOM05D005772 ORTHO05D006468 4.0e-18 95.9 148 37.2
Actinidia15231 Actinidia chinensis HOM05D005772 ORTHO05D006468 1.2e-17 94.4 147 37.4
SHI31127 Sapria himalayana HOM05D005772 ORTHO05D006468 1.5e-17 94.0 277 30.7
Migut.E01717 Erythranthe guttata HOM05D005772 ORTHO05D006468 4.4e-17 92.4 148 36.5
TAR628G1655 Trochodendron aralioides HOM05D005772 ORTHO05D006468 9.9e-17 91.3 129 40.3
Manes.02G166200 Manihot esculenta HOM05D005772 ORTHO05D006468 1.7e-16 90.5 142 37.3
Thecc.08G129200 Theobroma cacao HOM05D005772 ORTHO05D006468 1.7e-16 90.5 153 37.9
Potri.005G180400 Populus trichocarpa HOM05D005772 ORTHO05D006468 3.8e-16 89.4 102 44.1
Ciclev10003748m.g Citrus clementina HOM05D005772 ORTHO05D006468 6.4e-16 88.6 154 38.3
Migut.C01111 Erythranthe guttata HOM05D005772 ORTHO05D006468 8.4e-16 88.2 148 35.8
Hma1.2p1_0612F.1_g188830 Hydrangea macrophylla HOM05D005772 ORTHO05D006468 1.4e-15 87.4 205 29.3
Nn5g28367 Nelumbo nucifera HOM05D005772 ORTHO05D006468 1.4e-15 87.4 202 31.2
Cpa.g.sc64.117 Carica papaya HOM05D005772 ORTHO05D006468 2.4e-15 86.7 134 37.3
THA.LOC104800210 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 5.4e-15 85.5 134 37.3
VMungo1309G2764 Vigna mungo HOM05D005772 ORTHO05D006468 5.4e-15 85.5 156 33.3
CANSAT64G1440 Cannabis sativa HOM05D005772 ORTHO05D006468 9.2e-15 84.7 118 37.3
Zm00001eb215960 Zea mays HOM05D046982 ORTHO05D006468 1.2e-14 84.3 150 36.0
Phvul.009G125600 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 1.6e-14 84.0 146 34.9
Duzib093G1216 Durio zibethinus HOM05D005772 ORTHO05D006468 2.7e-14 83.2 151 35.1
GSVIVG01008837001 Vitis vinifera HOM05D005772 ORTHO05D006468 2.7e-14 83.2 151 36.4
CiPaw.16G025800 Carya illinoinensis HOM05D005772 ORTHO05D006468 6.0e-14 82.0 149 33.6
Cc10_g12210 Coffea canephora HOM05D005772 ORTHO05D006468 1.7e-13 80.5 104 40.4
Phvul.007G102200 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 1.7e-13 80.5 128 35.9
Actinidia21305 Actinidia chinensis HOM05D005772 ORTHO05D006468 2.3e-13 80.1 200 32.0
Glyma.06G113802 Glycine max HOM05D005772 ORTHO05D006468 2.3e-13 80.1 102 42.2
QL09p033796 Quercus lobata HOM05D005772 ORTHO05D006468 2.3e-13 80.1 129 38.0
Lalb_Chr08g0241421 Lupinus albus HOM05D005772 ORTHO05D006468 5.1e-13 79.0 141 34.8
CARHR022100 Cardamine hirsuta HOM05D005772 ORTHO05D006468 6.6e-13 78.6 118 34.7
Glyma.04G249200 Glycine max HOM05D005772 ORTHO05D006468 6.6e-13 78.6 164 31.1
Psat5g087080 Pisum sativum HOM05D005772 ORTHO05D006468 8.6e-13 78.2 126 35.7
AL1G34900 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 1.1e-12 77.8 118 33.9
FvH4_6g36610 Fragaria vesca HOM05D005772 ORTHO05D006468 1.9e-12 77.0 154 37.0
SGA_v2.0_scaffold52G18944 Striga asiatica HOM05D005772 ORTHO05D006468 2.5e-12 76.6 153 30.7
Nitab4.5_0000111g0180 Nicotiana tabacum HOM05D005772 ORTHO05D006468 4.3e-12 75.9 129 34.1
arahy.Tifrunner.gnm1.ann1.B1JKF4 Arachis hypogaea HOM05D005772 ORTHO05D006468 5.6e-12 75.5 148 32.4
ClCG11G015880 Citrullus lanatus HOM05D005772 ORTHO05D006468 5.6e-12 75.5 148 33.8
TPR.G21059 Trifolium pratense HOM05D005772 ORTHO05D006468 5.6e-12 75.5 127 37.8
MELO3C010502.2 Cucumis melo HOM05D005772 ORTHO05D006468 1.2e-11 74.3 207 29.5
CsaV3_4G028090 Cucumis sativus L. HOM05D005772 ORTHO05D006468 1.2e-11 74.3 208 30.3
AT1G21722 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 1.6e-11 73.9 118 33.1
Carub.0001s2117 Capsella rubella HOM05D005772 ORTHO05D006468 1.6e-11 73.9 119 30.3
Dinv27285 Davidia involucrata HOM05D005772 ORTHO05D006468 2.1e-11 73.6 130 33.1
Eucgr.A00749 Eucalyptus grandis HOM05D005772 ORTHO05D006468 4.7e-11 72.4 151 37.7
Aa31LG7G5690 Aethionema arabicum HOM05D002121 ORTHO05D004000 6.2e-11 72.0 100 41.0
Solyc11g017475.1 Solanum lycopersicum HOM05D005772 ORTHO05D006468 6.2e-11 72.0 83 43.4
Nitab4.5_0004208g0030 Nicotiana tabacum HOM05D005772 ORTHO05D006468 8.1e-11 71.6 82 40.2
Oeu009481.1 Olea europaea HOM05D005772 ORTHO05D006468 8.1e-11 71.6 82 41.5
Duzib192G0394 Durio zibethinus HOM05D005772 ORTHO05D006468 1.1e-10 71.2 141 33.3
Aqoxy6G00258 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 1.4e-10 70.9 167 29.9
Thhalv10008678m.g Eutrema salsugineum HOM05D005772 ORTHO05D006468 1.4e-10 70.9 123 30.1
Haze_16205 Corylus avellana HOM05D005772 ORTHO05D006468 2.4e-10 70.1 168 33.3
Lj1g0001548 Lotus japonicus HOM05D005772 ORTHO05D006468 2.4e-10 70.1 148 33.8
arahy.Tifrunner.gnm1.ann1.AWF3QX Arachis hypogaea HOM05D005772 ORTHO05D006468 3.1e-10 69.7 152 30.9
CSS0028957 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 5.2e-10 68.9 178 29.8
DCAR_003562 Daucus carota HOM05D005772 ORTHO05D006468 5.2e-10 68.9 116 31.9
Atru.chr1.2602 Acer truncatum HOM05D005772 ORTHO05D006468 6.9e-10 68.6 73 47.9
PGR042G3290 Punica granatum HOM05D005772 ORTHO05D006468 6.9e-10 68.6 127 33.9
BcaC05g26092 Brassica carinata HOM05D005772 ORTHO05D006468 8.9e-10 68.2 103 30.1
A06p17810 Brassica napus HOM05D005772 ORTHO05D006468 8.9e-10 68.2 103 30.1
MSTRG.1426 Avicennia marina HOM05D005772 ORTHO05D006468 1.5e-09 67.4 82 37.8
Lj4A634T17 Lonicera japonica HOM05D005772 ORTHO05D006468 1.5e-09 67.4 167 29.9
SGA_v2.0_scaffold24G10436 Striga asiatica HOM05D002121 ORTHO05D004000 1.7e-08 63.9 109 30.3
SGA_v2.0_scaffold52G18951 Striga asiatica HOM05D005772 ORTHO05D006468 1.7e-08 63.9 124 31.5
A07p14940 Brassica napus HOM05D005772 ORTHO05D006468 1.4e-07 60.8 116 28.4
SalBow5G0344 Salvia bowleyana HOM05D005772 ORTHO05D006468 2.1e-06 57.0 61 37.7


User provided reference genes

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