Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p30100 Brassica napus HOM05D003962 ORTHO05D032564 6.5e-82 307.4 158 100.0
BolC6t38171H Brassica oleracea HOM05D003962 ORTHO05D032564 6.5e-82 307.4 158 100.0
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 1.0e-63 246.9 151 88.7
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 1.0e-63 246.9 151 88.7
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 1.4e-63 246.5 151 88.1
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 3.9e-63 245.0 150 88.7
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 3.9e-63 245.0 150 88.7
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 2.2e-58 229.2 150 86.0
BcaC08g45378 Brassica carinata HOM05D003962 ORTHO05D032564 9.4e-49 197.2 102 99.0
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 2.5e-41 172.6 153 66.7
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 3.2e-41 172.2 155 66.5
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 9.5e-41 170.6 154 69.5
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 2.7e-40 169.1 155 66.5
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.1e-36 157.1 152 63.2
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 9.2e-28 127.5 157 58.0
A03p24330 Brassica napus HOM05D003962 ORTHO05D004714 2.3e-26 122.9 68 94.1
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 7.3e-25 117.9 156 51.9
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 2.9e-21 105.9 162 46.3
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 2.0e-14 83.2 156 44.2
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 3.4e-14 82.4 164 39.6
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 1.3e-13 80.5 133 42.1
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 2.2e-13 79.7 161 38.5
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 1.9e-12 76.6 132 43.2
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 2.4e-12 76.3 167 37.7
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 5.4e-12 75.1 136 41.9
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 1.2e-11 73.9 134 40.3
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 2.7e-11 72.8 167 35.3
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 3.5e-11 72.4 145 37.2
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 4.6e-11 72.0 158 39.2
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 3.0e-10 69.3 164 35.4
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.9e-10 68.9 113 41.6
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 8.6e-10 67.8 164 34.1
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 8.6e-10 67.8 153 34.6
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 1.1e-09 67.4 135 36.3
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.5e-09 67.0 129 39.5
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 1.9e-09 66.6 117 41.0
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 2.5e-09 66.2 129 38.0
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.5e-09 66.2 129 38.0
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.5e-09 66.2 129 38.0
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 4.3e-09 65.5 129 38.8
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 9.5e-09 64.3 126 38.1
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 9.5e-09 64.3 119 38.7
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.2e-08 63.9 129 38.0
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 3.6e-08 62.4 126 36.5
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 4.7e-08 62.0 127 38.6
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 6.2e-08 61.6 129 36.4
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 1.4e-07 60.5 165 32.7
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 1.4e-07 60.5 110 40.9
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 6.8e-07 58.2 110 40.0
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 8.9e-07 57.8 118 39.8
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 8.9e-07 57.8 167 31.1
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 1.2e-06 57.4 145 34.5
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 1.2e-06 57.4 110 40.0
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.2e-06 57.4 136 34.6
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.5e-06 57.0 167 31.1
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 3.4e-06 55.8 110 39.1


User provided reference genes

Program Settings