Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 8.0e-115 417.2 217 100.0
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 1.4e-111 406.4 219 97.7
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 1.7e-109 399.4 220 96.8
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 1.7e-109 399.4 220 96.8
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 2.7e-107 392.1 220 96.4
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 6.3e-104 380.9 222 93.7
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 1.0e-98 363.6 219 90.0
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 4.0e-98 361.7 224 90.2
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 2.0e-97 359.4 224 89.7
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 9.8e-97 357.1 218 88.5
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 4.9e-96 354.8 226 88.1
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 4.9e-96 354.8 226 88.1
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 6.3e-96 354.4 223 89.2
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 1.4e-95 353.2 225 88.4
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 1.8e-95 352.8 210 90.0
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 3.1e-95 352.1 218 87.6
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 9.2e-95 350.5 218 87.6
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 6.1e-91 337.8 215 81.9
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 8.0e-83 310.8 205 78.0
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 4.9e-80 301.6 177 88.1
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 2.2e-64 249.6 193 71.0
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 3.8e-64 248.8 216 64.4
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 6.4e-64 248.1 193 70.5
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 6.4e-64 248.1 205 66.8
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 8.4e-64 247.7 195 68.7
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.4e-63 246.9 210 67.6
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 1.9e-63 246.5 195 68.2
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 3.2e-63 245.7 206 66.0
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 4.1e-63 245.4 207 66.7
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 2.7e-62 242.7 202 65.8
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 6.0e-62 241.5 209 65.6
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 2.3e-61 239.6 211 64.5
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 3.0e-61 239.2 205 66.3
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 5.1e-61 238.4 211 65.4
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 8.6e-61 237.7 223 62.8
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 8.6e-61 237.7 205 64.9
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 1.5e-60 236.9 205 65.9
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 1.5e-60 236.9 204 64.2
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 1.5e-60 236.9 198 65.7
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 1.5e-60 236.9 195 66.7
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 1.5e-60 236.9 203 66.0
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 1.9e-60 236.5 202 63.4
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 1.9e-60 236.5 203 66.5
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 2.5e-60 236.1 202 64.4
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 3.3e-60 235.7 154 81.2
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 3.3e-60 235.7 204 65.7
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 3.3e-60 235.7 203 65.0
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 4.3e-60 235.3 204 65.7
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 9.6e-60 234.2 213 62.9
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 1.2e-59 233.8 199 66.3
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 1.2e-59 233.8 204 61.8
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 1.6e-59 233.4 207 63.3
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 1.6e-59 233.4 207 63.3
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 2.8e-59 232.6 189 65.6
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 4.7e-59 231.9 176 72.7
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 4.7e-59 231.9 192 67.2
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 6.2e-59 231.5 207 66.2
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 8.1e-59 231.1 193 65.8
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 8.1e-59 231.1 210 61.4
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 1.1e-58 230.7 204 64.2
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 1.1e-58 230.7 198 62.6
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 1.1e-58 230.7 198 63.1
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.4e-58 230.3 206 65.0
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 1.8e-58 229.9 198 61.6
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 1.8e-58 229.9 198 63.1
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 4.0e-58 228.8 206 60.2
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 4.0e-58 228.8 221 59.7
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 1.2e-57 227.3 230 57.0
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 2.0e-57 226.5 210 59.0
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 7.6e-57 224.6 199 63.8
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 7.6e-57 224.6 199 64.8
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 7.6e-57 224.6 181 68.5
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 9.9e-57 224.2 199 64.3
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 1.3e-56 223.8 216 56.9
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 1.3e-56 223.8 181 69.1
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 2.2e-56 223.0 214 59.8
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 2.2e-56 223.0 188 63.8
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 2.9e-56 222.6 207 60.9
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 2.9e-56 222.6 208 62.0
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 3.8e-56 222.2 193 63.2
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 4.9e-56 221.9 220 60.5
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 8.4e-56 221.1 205 61.5
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 1.1e-55 220.7 204 57.8
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.4e-55 220.3 196 63.3
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 1.9e-55 219.9 160 71.9
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 3.2e-55 219.2 199 63.8
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 4.2e-55 218.8 205 61.5
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 5.4e-55 218.4 195 60.5
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 7.1e-55 218.0 202 59.9
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 1.6e-54 216.9 142 77.5
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 2.7e-54 216.1 149 73.8
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 2.7e-54 216.1 198 62.1
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 2.7e-54 216.1 184 66.3
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 2.7e-54 216.1 233 53.2
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 2.7e-54 216.1 169 69.8
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 3.5e-54 215.7 194 61.3
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 4.6e-54 215.3 172 66.9
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 7.8e-54 214.5 197 62.4
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 1.0e-53 214.2 145 76.6
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 1.0e-53 214.2 184 66.3
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 1.3e-53 213.8 224 56.2
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 1.3e-53 213.8 168 67.3
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.3e-53 213.8 176 67.6
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 1.3e-53 213.8 204 55.9
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 1.7e-53 213.4 206 57.8
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 3.0e-53 212.6 205 57.6
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 1.5e-52 210.3 199 61.8
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 1.1e-50 204.1 199 60.3
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 2.0e-49 199.9 174 62.6
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 9.9e-49 197.6 192 60.9
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 2.9e-48 196.1 163 68.1
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 3.8e-48 195.7 135 73.3
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 3.8e-48 195.7 201 59.7
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 6.4e-48 194.9 134 70.1
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 1.4e-47 193.7 202 56.4
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 1.9e-47 193.4 202 56.4
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 2.4e-47 193.0 203 55.7
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 1.2e-46 190.7 189 59.8
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 1.6e-46 190.3 200 60.0
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 5.1e-45 185.3 145 66.2
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 5.6e-44 181.8 125 75.2
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 1.4e-42 177.2 131 70.2
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 1.5e-41 173.7 130 68.5
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 7.6e-41 171.4 134 65.7
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 8.4e-40 167.9 134 64.9
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 5.5e-39 165.2 134 64.9
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 1.0e-37 161.0 204 49.5
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 7.6e-33 144.8 78 93.6
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 7.6e-33 144.8 78 93.6
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 2.5e-31 139.8 127 61.4
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 6.7e-29 131.7 140 55.0
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 9.6e-28 127.9 205 42.4
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 4.1e-26 122.5 205 44.4
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 4.1e-26 122.5 72 84.7
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 1.3e-21 107.5 74 74.3
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 1.4e-15 87.4 70 67.1
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.6e-14 84.0 63 66.7
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 5.3e-10 68.9 45 77.8
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 9.1e-10 68.2 138 37.7
CARHR073520 Cardamine hirsuta HOM05D005382 ORTHO05D006795 5.9e-09 65.5 47 72.3


User provided reference genes

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