Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38110H Brassica oleracea HOM05D005915 ORTHO05D007239 1.7e-106 389.4 213 100.0
C06p29450 Brassica napus HOM05D005915 ORTHO05D007239 4.8e-104 381.3 213 98.1
BcaC08g45335 Brassica carinata HOM05D005915 ORTHO05D007239 1.9e-100 369.4 202 100.0
A07p26820 Brassica napus HOM05D005915 ORTHO05D007239 4.2e-92 341.7 214 90.2
BraA07t30325Z Brassica rapa HOM05D005915 ORTHO05D007239 4.6e-91 338.2 216 88.0
BcaB02g07251 Brassica carinata HOM05D005915 ORTHO05D007239 7.6e-86 320.9 216 85.2
Sp5g35050 Schrenkiella parvula HOM05D005915 ORTHO05D007239 3.0e-82 308.9 223 81.2
BolC6t40396H Brassica oleracea HOM05D005915 ORTHO05D007239 5.7e-81 304.7 223 79.4
BraA07t32004Z Brassica rapa HOM05D005915 ORTHO05D007239 1.2e-78 297.0 223 77.1
A07p44990 Brassica napus HOM05D005915 ORTHO05D007239 1.3e-77 293.5 222 77.5
C06p53780 Brassica napus HOM05D005915 ORTHO05D007239 3.2e-76 288.9 222 76.6
AT1G80700 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 9.3e-76 287.3 211 77.7
AL2G40740 Arabidopsis lyrata HOM05D005915 ORTHO05D007239 9.7e-73 277.3 214 75.2
Carub.0002s2685 Capsella rubella HOM05D005915 ORTHO05D007239 9.7e-73 277.3 212 76.9
AT1G80980 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 4.8e-72 275.0 214 75.2
Thhalv10019105m.g Eutrema salsugineum HOM05D005915 ORTHO05D007239 2.2e-69 266.2 222 71.2
BcaC08g47553 Brassica carinata HOM05D005915 ORTHO05D007239 3.3e-65 252.3 213 74.2
Aa31LG4G980 Aethionema arabicum HOM05D005915 ORTHO05D007239 6.5e-53 211.5 231 59.7
THA.LOC104812439 Tarenaya hassleriana HOM05D005915 ORTHO05D007239 5.5e-44 181.8 202 56.4
Actinidia25458 Actinidia chinensis HOM05D005915 ORTHO05D007239 6.8e-34 148.3 197 46.7
Dinv23302 Davidia involucrata HOM05D005915 ORTHO05D007239 7.5e-33 144.8 209 46.9
QL02p069532 Quercus lobata HOM05D005915 ORTHO05D007239 2.7e-30 136.3 223 44.8
CARHR073810 Cardamine hirsuta HOM05D005915 ORTHO05D007239 5.9e-30 135.2 112 60.7
Atru.chr6.915 Acer truncatum HOM05D005915 ORTHO05D007239 1.3e-29 134.0 183 47.5
Gohir.D09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 2.3e-29 133.3 208 46.6
COL.COLO4_26669 Corchorus olitorius HOM05D005915 ORTHO05D007239 2.9e-29 132.9 210 46.2
Rhsim08G0207800 Rhododendron simsii HOM05D005915 ORTHO05D007239 2.9e-29 132.9 199 46.7
Manes.11G064500 Manihot esculenta HOM05D005915 ORTHO05D007239 3.8e-29 132.5 219 46.6
MD17G1221100 Malus domestica HOM05D005915 ORTHO05D007239 6.6e-29 131.7 219 45.7
Gorai.006G107100 Gossypium raimondii HOM05D005915 ORTHO05D007239 8.6e-29 131.3 209 46.9
TWI18G1314 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 8.6e-29 131.3 213 44.1
ClCG07G012140 Citrullus lanatus HOM05D005915 ORTHO05D007239 1.1e-28 131.0 211 44.1
MELO3C017835.2 Cucumis melo HOM05D005915 ORTHO05D007239 1.1e-28 131.0 208 43.3
Potri.003G180500 Populus trichocarpa HOM05D005915 ORTHO05D007239 1.5e-28 130.6 216 44.4
Migut.D01097 Erythranthe guttata HOM05D005915 ORTHO05D007239 1.9e-28 130.2 166 48.8
SHI11251 Sapria himalayana HOM05D005915 ORTHO05D007239 4.3e-28 129.0 167 46.1
Nitab4.5_0009423g0020 Nicotiana tabacum HOM05D005915 ORTHO05D007239 5.6e-28 128.6 226 41.6
vmacro19042 Vaccinium macrocarpon HOM05D005915 ORTHO05D007239 7.3e-28 128.3 190 47.9
CsaV3_4G002020 Cucumis sativus L. HOM05D005915 ORTHO05D007239 9.5e-28 127.9 208 41.8
SGA_v2.0_scaffold89G27484 Striga asiatica HOM05D005915 ORTHO05D007239 1.6e-27 127.1 166 48.2
PGSC0003DMG400014193 Solanum tuberosum HOM05D005915 ORTHO05D007239 2.1e-27 126.7 175 46.9
Gohir.A09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 3.6e-27 125.9 219 43.8
CiPaw.01G253100 Carya illinoinensis HOM05D005915 ORTHO05D007239 4.7e-27 125.6 243 42.8
Oeu033656.3 Olea europaea HOM05D005915 ORTHO05D007239 4.7e-27 125.6 205 42.4
MSTRG.4689 Avicennia marina HOM05D005915 ORTHO05D007239 8.0e-27 124.8 142 52.1
Duzib235G0368 Durio zibethinus HOM05D005915 ORTHO05D007239 1.8e-26 123.6 226 43.4
Nitab4.5_0001454g0070 Nicotiana tabacum HOM05D005915 ORTHO05D007239 1.8e-26 123.6 229 38.9
Solyc03g117090.3 Solanum lycopersicum HOM05D005915 ORTHO05D007239 2.3e-26 123.2 183 45.4
Sed0026009 Sechium edule HOM05D005915 ORTHO05D007239 4.0e-26 122.5 196 42.3
arahy.Tifrunner.gnm1.ann1.DN9Y4W Arachis hypogaea HOM05D005915 ORTHO05D007239 5.2e-26 122.1 207 44.4
CANSAT56G1340 Cannabis sativa HOM05D005915 ORTHO05D007239 5.2e-26 122.1 185 49.7
TWI12G0041 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 8.9e-26 121.3 195 47.2
Sopen03g036000 Solanum pennellii HOM05D005915 ORTHO05D007239 1.2e-25 120.9 183 44.8
arahy.Tifrunner.gnm1.ann1.2L8LZM Arachis hypogaea HOM05D005915 ORTHO05D007239 1.5e-25 120.6 207 44.0
Thecc.06G038900 Theobroma cacao HOM05D005915 ORTHO05D007239 2.6e-25 119.8 123 51.2
AL5G28080 Arabidopsis lyrata HOM05D005915 ORTHO05D007239 4.4e-25 119.0 102 76.5
Ciclev10026473m.g Citrus clementina HOM05D005915 ORTHO05D007239 4.4e-25 119.0 215 43.3
HanXRQChr04g0107231 Helianthus annuus HOM05D005915 ORTHO05D007239 9.8e-25 117.9 174 45.4
Lsat_1_v5_gn_4_85741 Lactuca sativa HOM05D005915 ORTHO05D007239 9.8e-25 117.9 185 44.9
PSO063G1890 Papaver somniferum HOM05D005915 ORTHO05D007239 9.8e-25 117.9 174 43.1
PGR142G0337 Punica granatum HOM05D005915 ORTHO05D007239 1.3e-24 117.5 158 46.2
Sabra01G0033000 Salix brachista HOM05D005915 ORTHO05D007239 1.3e-24 117.5 171 50.9
ECA232G2243 Erigeron canadensis HOM05D005915 ORTHO05D007239 1.7e-24 117.1 164 47.0
Sc12g0008470 Simmondsia chinensis HOM05D005915 ORTHO05D007239 2.9e-24 116.3 206 41.7
BolC3t13327H Brassica oleracea HOM05D005915 ORTHO05D007239 3.7e-24 115.9 111 67.6
Eucgr.J03100 Eucalyptus grandis HOM05D005915 ORTHO05D007239 4.9e-24 115.5 159 48.4
PSO782G5373 Papaver somniferum HOM05D005915 ORTHO05D007239 1.1e-23 114.4 171 41.5
PGR102G1994 Punica granatum HOM05D005915 ORTHO05D007239 2.4e-23 113.2 218 39.4
Prupe.7G069400 Prunus persica HOM05D005915 ORTHO05D007239 3.2e-23 112.8 202 44.1
Glyma.08G216900 Glycine max HOM05D005915 ORTHO05D007239 9.2e-23 111.3 173 47.4
Phvul.010G159800 Phaseolus vulgaris HOM05D005915 ORTHO05D007239 1.6e-22 110.5 230 39.6
Ca_20554_v3 Cicer arietinum L. HOM05D005915 ORTHO05D007239 2.0e-22 110.2 202 38.6
unitig_736.g22803 Utricularia gibba HOM05D005915 ORTHO05D007239 2.7e-22 109.8 182 41.2
VMungo0331G1031 Vigna mungo HOM05D005915 ORTHO05D007239 2.7e-22 109.8 184 42.9
Aqoxy7G03485 Aquilegia oxysepala HOM05D005915 ORTHO05D007239 3.5e-22 109.4 182 41.2
Potri.001G047700 Populus trichocarpa HOM05D005915 ORTHO05D007239 5.9e-22 108.6 156 50.6
TPR.G38763 Trifolium pratense HOM05D005915 ORTHO05D007239 1.0e-21 107.8 213 41.3
TPR.G17738 Trifolium pratense HOM05D005915 ORTHO05D007239 1.7e-21 107.1 206 41.3
FvH4_5g29190 Fragaria vesca HOM05D005915 ORTHO05D007239 3.0e-21 106.3 184 46.7
Ah.05g171200 Amaranthus hybridus HOM05D005915 ORTHO05D007239 6.6e-21 105.1 204 39.2
HPP92_016367 Vanilla planifolia HOM05D005915 ORTHO05D007239 1.5e-20 104.0 183 42.6
Lj3g0003301 Lotus japonicus HOM05D005915 ORTHO05D007239 1.9e-20 103.6 212 39.6
HanXRQChr09g0274531 Helianthus annuus HOM05D005915 ORTHO05D007239 3.3e-20 102.8 94 58.5
Psat7g259880 Pisum sativum HOM05D005915 ORTHO05D007239 3.3e-20 102.8 225 36.4
CSS0040460 Camellia sinensis var. sinensis HOM05D005915 ORTHO05D007239 7.3e-20 101.7 161 48.4
Oeu008050.2 Olea europaea HOM05D005915 ORTHO05D007239 7.3e-20 101.7 161 43.5
EL10As5g23598 Beta vulgaris HOM05D005915 ORTHO05D007239 1.2e-19 100.9 214 38.8
Medtr8g060830 Medicago truncatula HOM05D005915 ORTHO05D007239 8.0e-19 98.2 177 41.2
Medtr4g006550 Medicago truncatula HOM05D005915 ORTHO05D007239 1.0e-18 97.8 127 50.4
Nn2g12284 Nelumbo nucifera HOM05D005915 ORTHO05D007239 1.4e-18 97.4 234 34.2
TAR633G0597 Trochodendron aralioides HOM05D005915 ORTHO05D007239 1.4e-18 97.4 183 36.1
RcHm_v2.0_Chr7g0221831 Rosa chinensis HOM05D005915 ORTHO05D007239 1.5e-17 94.0 121 51.2
Hund00452 Selenicereus undatus HOM05D005915 ORTHO05D007239 2.0e-17 93.6 247 37.7
AUR62027568 Chenopodium quinoa HOM05D005915 ORTHO05D007239 3.4e-17 92.8 195 41.5
Lalb_Chr01g0012181 Lupinus albus HOM05D005915 ORTHO05D007239 3.4e-17 92.8 240 34.2
PSO339G3366 Papaver somniferum HOM05D005915 ORTHO05D007239 3.7e-16 89.4 126 43.7
Nitab4.5_0004330g0010 Nicotiana tabacum HOM05D005915 ORTHO05D007239 1.1e-15 87.8 113 51.3
AUR62022762 Chenopodium quinoa HOM05D005915 ORTHO05D007239 1.9e-15 87.0 195 40.5
SalBow6G5910 Salvia bowleyana HOM05D005915 ORTHO05D007239 7.0e-15 85.1 268 30.2
Zm00001eb174980 Zea mays HOM05D005915 ORTHO05D007239 9.2e-15 84.7 155 43.9
Cc04_g04930 Coffea canephora HOM05D005915 ORTHO05D007239 1.0e-13 81.3 111 51.4
FAN18G1559 Fragaria x ananassa HOM05D005915 ORTHO05D007239 1.0e-13 81.3 144 48.6
ATR1120G130 Amborella trichopoda HOM05D005915 ORTHO05D007239 3.9e-13 79.3 140 44.3
SEGI_14387 Sequoiadendron giganteum HOM05D005915 ORTHO05D007239 6.6e-13 78.6 194 33.5
Dinv21397 Davidia involucrata HOM05D005915 ORTHO05D007239 8.6e-13 78.2 189 40.2
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.1e-12 77.8 63 68.3
Os08g0278100 Oryza sativa ssp. japonica HOM05D005915 ORTHO05D007239 9.5e-12 74.7 175 37.7
Mapoly0140s0034 Marchantia polymorpha HOM05D005915 ORTHO05D007239 1.4e-10 70.9 175 33.7
CDE05G3202 Ceratophyllum demersum HOM05D005915 ORTHO05D007239 1.8e-10 70.5 99 55.6
Peaxi162Scf00332g00322 Petunia axillaris HOM05D005915 ORTHO05D007239 1.8e-10 70.5 230 30.0
FAN08G0623 Fragaria x ananassa HOM05D005915 ORTHO05D007239 4.0e-10 69.3 219 35.2
ClCG00G004860 Citrullus lanatus HOM05D005915 ORTHO05D007239 5.2e-10 68.9 79 46.8
Glyma.07G025532 Glycine max HOM05D005915 ORTHO05D007239 8.9e-10 68.2 48 58.3
GSVIVG01017558001 Vitis vinifera HOM05D005915 ORTHO05D007239 2.6e-09 66.6 75 46.7
Cpa.g.sc0.147 Carica papaya HOM05D005915 ORTHO05D007239 7.5e-09 65.1 96 45.8
Haze_16650 Corylus avellana HOM05D005915 ORTHO05D007239 9.8e-09 64.7 48 62.5
Actinidia25450 Actinidia chinensis HOM05D005915 ORTHO05D007239 2.9e-08 63.2 41 70.7
Pp3c9_20610 Physcomitrium patens HOM05D005915 ORTHO05D007239 8.3e-08 61.6 158 35.4
GSVIVG01017559001 Vitis vinifera HOM05D005915 ORTHO05D007239 2.4e-07 60.1 131 41.2
Prupe.1G199000 Prunus persica HOM05D005915 ORTHO05D007239 5.4e-07 58.9 123 43.1


User provided reference genes

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