Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 4.0e-273 944.1 459 100.0
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 4.0e-273 944.1 459 100.0
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 1.0e-268 929.5 460 98.3
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 1.3e-236 822.8 462 89.4
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 8.6e-236 820.1 452 90.3
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 5.6e-235 817.4 462 88.1
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 8.9e-233 810.1 459 87.1
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 1.4e-230 802.7 460 87.2
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 5.4e-230 800.8 460 87.2
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 7.8e-229 797.0 460 86.5
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 3.0e-228 795.0 460 86.3
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 3.9e-228 794.7 462 86.4
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 1.2e-226 789.6 457 85.1
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 1.4e-225 786.2 460 85.9
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 5.2e-225 784.3 468 86.1
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 1.5e-224 782.7 465 86.0
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 4.4e-224 781.2 465 85.8
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 9.9e-224 780.0 462 83.5
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 9.9e-224 780.0 469 85.1
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 2.2e-223 778.9 491 80.9
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 2.8e-218 761.9 461 82.0
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 2.9e-207 725.3 470 76.4
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 5.3e-201 704.5 462 75.3
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 7.6e-200 700.7 375 91.7
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 1.7e-199 699.5 462 74.9
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 1.3e-178 630.2 383 78.9
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 2.0e-176 622.9 453 68.2
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 2.9e-175 619.0 463 67.4
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.4e-174 616.7 451 67.6
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 7.2e-174 614.4 451 67.4
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 2.1e-173 612.8 451 67.4
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 3.6e-173 612.1 460 66.3
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 7.9e-173 610.9 350 81.1
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 2.3e-172 609.4 427 69.6
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 1.1e-171 607.1 482 63.5
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 4.4e-171 605.1 408 72.1
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.3e-170 603.6 424 71.0
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 3.7e-170 602.1 463 65.7
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 6.3e-170 601.3 442 66.7
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 8.2e-170 600.9 423 70.9
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 8.2e-170 600.9 382 74.1
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 1.1e-169 600.5 456 65.8
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 1.8e-169 599.7 438 67.6
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 2.4e-169 599.4 369 74.5
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 2.4e-169 599.4 427 69.1
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 5.3e-169 598.2 382 75.7
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 7.0e-169 597.8 408 71.1
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 7.0e-169 597.8 465 64.9
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 9.1e-169 597.4 412 70.1
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 2.0e-168 596.3 408 70.8
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 3.5e-168 595.5 441 66.0
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 4.5e-168 595.1 387 73.6
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 5.9e-168 594.7 372 75.0
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 1.3e-167 593.6 427 68.6
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 6.5e-167 591.3 423 67.8
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 6.5e-167 591.3 428 67.8
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 8.5e-167 590.9 393 71.5
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 1.1e-166 590.5 409 69.7
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 2.5e-166 589.3 416 69.2
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 2.5e-166 589.3 343 78.4
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 4.2e-166 588.6 408 70.3
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 5.5e-166 588.2 408 69.9
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 9.4e-166 587.4 397 71.0
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 1.2e-165 587.0 388 71.6
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 1.2e-165 587.0 378 74.3
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 1.6e-165 586.6 395 73.4
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 1.6e-165 586.6 402 69.4
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 2.7e-165 585.9 474 64.8
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 3.6e-165 585.5 402 72.1
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 8.0e-165 584.3 384 72.4
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.0e-164 583.9 430 67.9
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 1.4e-164 583.6 386 72.0
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 1.4e-164 583.6 434 66.8
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 1.4e-164 583.6 387 72.1
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 1.4e-164 583.6 410 69.0
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 1.4e-164 583.6 382 72.8
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 4.0e-164 582.0 394 70.3
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 5.2e-164 581.6 414 68.8
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 8.8e-164 580.9 387 71.8
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 8.8e-164 580.9 387 71.8
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.2e-163 580.5 424 67.5
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 1.2e-163 580.5 413 68.5
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 1.5e-163 580.1 400 71.0
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 4.4e-163 578.6 388 70.9
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 9.7e-163 577.4 408 68.9
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 2.2e-162 576.2 391 72.1
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 2.2e-162 576.2 385 71.7
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 2.2e-162 576.2 372 74.5
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 3.7e-162 575.5 375 72.0
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 4.8e-162 575.1 456 63.6
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 4.8e-162 575.1 453 64.0
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 6.3e-162 574.7 398 70.9
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 8.2e-162 574.3 418 68.7
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 1.1e-161 573.9 456 62.1
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 5.3e-161 571.6 407 70.0
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 5.3e-161 571.6 461 62.3
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 2.7e-160 569.3 388 71.1
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 2.7e-160 569.3 471 62.4
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 7.7e-160 567.8 388 69.6
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 1.0e-159 567.4 345 77.4
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 2.9e-159 565.8 377 69.8
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 3.8e-159 565.5 412 66.5
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 1.5e-158 563.5 300 88.3
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 2.5e-158 562.8 345 78.6
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 5.5e-158 561.6 454 63.0
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 1.0e-156 557.4 407 67.3
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 1.4e-156 557.0 390 68.7
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 3.4e-155 552.4 381 69.3
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 5.7e-155 551.6 396 69.4
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 1.3e-154 550.4 415 65.3
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 3.7e-154 548.9 317 80.8
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 4.8e-154 548.5 344 76.2
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 3.1e-153 545.8 368 70.1
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 1.6e-152 543.5 342 72.5
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 3.5e-152 542.3 375 67.5
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 4.7e-149 531.9 335 71.3
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 2.9e-143 512.7 332 71.1
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 7.3e-142 508.1 349 70.5
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 1.2e-139 500.7 377 62.9
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 1.9e-134 483.4 247 95.1
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 7.5e-131 471.5 356 64.6
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 4.1e-129 465.7 427 56.2
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 9.2e-129 464.5 331 68.0
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 2.7e-128 463.0 342 65.2
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 3.5e-128 462.6 330 62.7
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 4.1e-121 439.1 351 59.0
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 1.7e-119 433.7 340 61.5
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 4.3e-118 429.1 310 65.2
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 2.0e-115 420.2 331 56.5
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 2.6e-115 419.9 334 57.2
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 9.9e-115 417.9 336 56.2
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 9.2e-113 411.4 274 70.4
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 5.2e-108 395.6 334 55.1
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 2.1e-88 330.5 330 47.6
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 2.1e-85 320.5 280 58.9
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 1.7e-82 310.8 345 44.6
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 9.3e-81 305.1 276 59.1
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 5.1e-79 299.3 326 47.5
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 1.6e-64 251.1 146 82.9
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 2.8e-53 213.8 136 72.1
arahy.Tifrunner.gnm1.ann1.CI84PE Arachis hypogaea HOM05D004738 ORTHO05D006439 3.5e-51 206.8 197 58.4
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 1.2e-38 165.2 164 45.7
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 5.7e-38 162.9 164 45.1
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 6.3e-37 159.5 243 41.6
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.0e-34 152.1 145 53.8
Ah.09g223940 Amaranthus hybridus HOM05D004738 ORTHO05D001643 1.4e-31 141.7 95 75.8
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 9.2e-28 129.0 79 75.9
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 3.6e-24 117.1 70 70.0
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 1.3e-21 108.6 64 76.6
Nn1g05393 Nelumbo nucifera HOM05D004738 ORTHO05D280673 1.1e-15 89.0 82 48.8
Pp3c21_6430 Physcomitrium patens HOM05D004738 ORTHO05D314778 1.6e-08 65.1 49 46.9


User provided reference genes

Program Settings