Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37923H Brassica oleracea HOM05D006382 ORTHO05D008938 6.3e-304 1046.6 508 100.0
C06p27550 Brassica napus HOM05D006382 ORTHO05D008938 1.0e-301 1039.3 508 99.4
BcaC08g45134 Brassica carinata HOM05D006382 ORTHO05D008938 3.6e-299 1030.8 508 98.6
BraA07t30197Z Brassica rapa HOM05D006382 ORTHO05D008938 5.0e-293 1010.4 508 96.5
A07p25560 Brassica napus HOM05D006382 ORTHO05D008938 6.5e-293 1010.0 508 96.7
BcaB02g07372 Brassica carinata HOM05D006382 ORTHO05D008938 1.7e-280 968.8 516 92.1
Sp5g01870 Schrenkiella parvula HOM05D006382 ORTHO05D008938 6.8e-266 920.2 526 87.5
Thhalv10005890m.g Eutrema salsugineum HOM05D006382 ORTHO05D008938 1.4e-255 885.9 526 83.7
Carub.0005s2823 Capsella rubella HOM05D006382 ORTHO05D008938 4.1e-255 884.4 509 85.5
CARHR171860 Cardamine hirsuta HOM05D006382 ORTHO05D008938 3.0e-253 878.2 526 82.5
AT3G61540 Arabidopsis thaliana HOM05D006382 ORTHO05D008938 8.6e-253 876.7 523 83.4
AL5G43900 Arabidopsis lyrata HOM05D006382 ORTHO05D008938 3.3e-244 848.2 455 89.5
THA.LOC104827604 Tarenaya hassleriana HOM05D006382 ORTHO05D008938 4.4e-233 811.2 525 76.2
TWI59G0052 Tripterygium wilfordii HOM05D006382 ORTHO05D008938 8.1e-227 790.4 483 78.3
Cpa.g.sc11.72 Carica papaya HOM05D006382 ORTHO05D008938 1.7e-224 782.7 491 76.2
RcHm_v2.0_Chr1g0357731 Rosa chinensis HOM05D006382 ORTHO05D008938 5.6e-220 767.7 515 72.8
Thecc.01G352300 Theobroma cacao HOM05D006382 ORTHO05D008938 9.6e-220 766.9 517 71.8
Lj1g0001840 Lotus japonicus HOM05D006382 ORTHO05D008938 1.4e-218 763.1 476 76.3
Duzib133G1372 Durio zibethinus HOM05D006382 ORTHO05D008938 1.8e-218 762.7 490 74.3
Gorai.007G103500 Gossypium raimondii HOM05D006382 ORTHO05D008938 5.3e-218 761.1 518 71.6
MD01G1071500 Malus domestica HOM05D006382 ORTHO05D008938 9.0e-218 760.4 520 71.2
Prupe.2G177700 Prunus persica HOM05D006382 ORTHO05D008938 7.6e-217 757.3 522 69.3
MSTRG.17299 Avicennia marina HOM05D006382 ORTHO05D008938 1.3e-216 756.5 506 71.1
Gohir.A11G092400 Gossypium hirsutum HOM05D006382 ORTHO05D008938 1.7e-216 756.1 517 71.0
FAN01G1899 Fragaria x ananassa HOM05D006382 ORTHO05D008938 8.4e-216 753.8 478 74.3
FvH4_7g15410 Fragaria vesca HOM05D006382 ORTHO05D008938 1.1e-215 753.4 478 74.5
VMungo1383G3370 Vigna mungo HOM05D006382 ORTHO05D008938 1.1e-215 753.4 486 73.3
Dinv43864 Davidia involucrata HOM05D006382 ORTHO05D008938 1.9e-215 752.7 493 72.8
Sed0009049 Sechium edule HOM05D006382 ORTHO05D008938 1.9e-215 752.7 513 72.9
CiPaw.01G067600 Carya illinoinensis HOM05D006382 ORTHO05D008938 2.4e-215 752.3 515 70.5
Lalb_Chr19g0126881 Lupinus albus HOM05D006382 ORTHO05D008938 3.2e-215 751.9 521 70.6
Nitab4.5_0000915g0130 Nicotiana tabacum HOM05D006382 ORTHO05D008938 4.2e-215 751.5 517 70.6
GSVIVG01026968001 Vitis vinifera HOM05D006382 ORTHO05D008938 7.1e-215 750.7 520 69.8
Aa31LG10G15440 Aethionema arabicum HOM05D006382 ORTHO05D008938 1.2e-214 750.0 481 77.3
Hma1.2p1_0335F.1_g128860 Hydrangea macrophylla HOM05D006382 ORTHO05D008938 1.6e-214 749.6 455 77.1
Eucgr.D02325 Eucalyptus grandis HOM05D006382 ORTHO05D008938 2.1e-214 749.2 473 76.1
Cfa003871 Carpinus fangiana HOM05D006382 ORTHO05D008938 3.5e-214 748.4 478 73.8
Nn1g01689 Nelumbo nucifera HOM05D006382 ORTHO05D008938 1.8e-213 746.1 491 72.3
Phvul.008G058200 Phaseolus vulgaris HOM05D006382 ORTHO05D008938 1.8e-213 746.1 474 74.3
SalBow3G4256 Salvia bowleyana HOM05D006382 ORTHO05D008938 3.9e-213 745.0 519 70.1
MELO3C006077.2 Cucumis melo HOM05D006382 ORTHO05D008938 6.7e-213 744.2 515 71.7
Peaxi162Scf00020g01516 Petunia axillaris HOM05D006382 ORTHO05D008938 6.7e-213 744.2 465 75.7
CSS0031254 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 8.7e-213 743.8 506 70.2
PGSC0003DMG400000065 Solanum tuberosum HOM05D006382 ORTHO05D008938 1.9e-212 742.7 517 71.2
QL04p055600 Quercus lobata HOM05D006382 ORTHO05D008938 3.3e-212 741.9 466 74.7
SGA_v2.0_scaffold4G02278 Striga asiatica HOM05D006382 ORTHO05D008938 5.6e-212 741.1 512 70.3
Solyc01g095120.3 Solanum lycopersicum HOM05D006382 ORTHO05D008938 7.4e-212 740.7 517 71.0
Sopen01g038910 Solanum pennellii HOM05D006382 ORTHO05D008938 7.4e-212 740.7 517 71.2
Actinidia20164 Actinidia chinensis HOM05D006382 ORTHO05D008938 9.6e-212 740.3 474 74.7
Ciclev10019743m.g Citrus clementina HOM05D006382 ORTHO05D008938 1.6e-211 739.6 479 73.7
Medtr7g079030 Medicago truncatula HOM05D006382 ORTHO05D008938 1.6e-211 739.6 481 73.2
vmacro13226 Vaccinium macrocarpon HOM05D006382 ORTHO05D008938 2.8e-211 738.8 510 69.2
Glyma.09G254600 Glycine max HOM05D006382 ORTHO05D008938 3.7e-211 738.4 523 69.2
CsaV3_3G008570 Cucumis sativus L. HOM05D006382 ORTHO05D008938 4.8e-211 738.0 474 75.3
Glyma.18G238400 Glycine max HOM05D006382 ORTHO05D008938 2.4e-210 735.7 455 75.6
TPR.G35789 Trifolium pratense HOM05D006382 ORTHO05D008938 2.4e-210 735.7 489 73.0
Atru.chr5.564 Acer truncatum HOM05D006382 ORTHO05D008938 3.1e-210 735.3 462 74.5
FAN06G2792 Fragaria x ananassa HOM05D006382 ORTHO05D008938 4.0e-210 734.9 507 69.8
Rhsim07G0010300 Rhododendron simsii HOM05D006382 ORTHO05D008938 4.0e-210 734.9 456 75.9
ClCG05G001220 Citrullus lanatus HOM05D006382 ORTHO05D008938 5.3e-210 734.6 474 75.5
Potri.002G164700 Populus trichocarpa HOM05D006382 ORTHO05D008938 1.2e-209 733.4 455 75.4
FAN03G1976 Fragaria x ananassa HOM05D006382 ORTHO05D008938 7.6e-209 730.7 504 69.8
Oeu063675.1 Olea europaea HOM05D006382 ORTHO05D008938 2.2e-208 729.2 487 72.1
Psat3g105480 Pisum sativum HOM05D006382 ORTHO05D008938 2.9e-208 728.8 481 72.3
CSS0000318 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 8.4e-208 727.2 499 70.3
Aqoxy7G00230 Aquilegia oxysepala HOM05D006382 ORTHO05D008938 1.9e-207 726.1 454 75.3
arahy.Tifrunner.gnm1.ann1.FF5BCH Arachis hypogaea HOM05D006382 ORTHO05D008938 5.5e-207 724.5 484 72.3
Nitab4.5_0010695g0050 Nicotiana tabacum HOM05D006382 ORTHO05D008938 5.5e-207 724.5 534 68.0
arahy.Tifrunner.gnm1.ann1.Z348XU Arachis hypogaea HOM05D006382 ORTHO05D008938 7.1e-207 724.2 484 72.5
PSO266G0056 Papaver somniferum HOM05D006382 ORTHO05D008938 1.2e-206 723.4 469 73.3
PSO384G0256 Papaver somniferum HOM05D006382 ORTHO05D008938 1.6e-206 723.0 482 71.4
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 1.3e-205 719.9 448 75.2
Sabra02G0146800 Salix brachista HOM05D006382 ORTHO05D008938 3.9e-205 718.4 455 73.8
Atru.BG.55.p Acer truncatum HOM05D006382 ORTHO05D008938 1.1e-204 716.8 453 74.4
CANSAT56G1207 Cannabis sativa HOM05D006382 ORTHO05D008938 1.5e-204 716.5 478 70.9
EL10Ac1g00353 Beta vulgaris HOM05D006382 ORTHO05D008938 3.7e-203 711.8 481 69.9
DCAR_005361 Daucus carota HOM05D006382 ORTHO05D008938 4.8e-203 711.4 463 71.9
HanXRQChr17g0562131 Helianthus annuus HOM05D006382 ORTHO05D008938 1.8e-202 709.5 452 72.1
Lj9C589T7 Lonicera japonica HOM05D006382 ORTHO05D008938 5.3e-202 708.0 498 68.5
FAN06G0271 Fragaria x ananassa HOM05D006382 ORTHO05D008938 1.5e-201 706.4 464 72.2
Sc01g0003200 Simmondsia chinensis HOM05D006382 ORTHO05D008938 5.8e-201 704.5 464 72.0
HPP92_008800 Vanilla planifolia HOM05D006382 ORTHO05D008938 1.3e-200 703.4 461 69.8
ECA234G1133 Erigeron canadensis HOM05D006382 ORTHO05D008938 2.9e-200 702.2 452 71.7
Haze_15566 Corylus avellana HOM05D006382 ORTHO05D008938 3.2e-199 698.7 505 67.7
AUR62004414 Chenopodium quinoa HOM05D006382 ORTHO05D008938 4.2e-199 698.4 515 65.4
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 2.1e-198 696.0 470 71.9
MBI06_g33533_MAGBIO Magnolia biondii HOM05D006382 ORTHO05D008938 7.9e-198 694.1 453 72.2
Cc02_g38570 Coffea canephora HOM05D006382 ORTHO05D008938 1.3e-197 693.3 458 71.8
ATR0721G029 Amborella trichopoda HOM05D006382 ORTHO05D008938 7.4e-196 687.6 451 71.8
CDE10G0280 Ceratophyllum demersum HOM05D006382 ORTHO05D008938 2.2e-195 686.0 478 67.6
Lsat_1_v5_gn_4_35160 Lactuca sativa HOM05D006382 ORTHO05D008938 6.9e-186 654.4 499 63.3
CANSAT56G3955 Cannabis sativa HOM05D006382 ORTHO05D008938 3.8e-184 648.7 457 67.6
Mapoly0179s0013 Marchantia polymorpha HOM05D006382 ORTHO05D008938 5.5e-175 618.2 475 62.3
unitig_747.g21323 Utricularia gibba HOM05D000887 ORTHO05D000908 2.1e-174 616.3 510 61.6
Pp3c20_22770 Physcomitrium patens HOM05D006382 ORTHO05D008938 2.7e-174 615.9 447 62.9
COL.COLO4_12779 Corchorus olitorius HOM05D006382 ORTHO05D008938 3.3e-172 609.0 454 66.3
AUR62022620 Chenopodium quinoa HOM05D006382 ORTHO05D008938 1.1e-170 604.0 498 60.0
SMO134G0292 Selaginella moellendorffii HOM05D006382 ORTHO05D008938 7.0e-170 601.3 452 62.4
Ah.05g180140 Amaranthus hybridus HOM05D006382 ORTHO05D008938 2.0e-169 599.7 474 61.2
CAN.G78.131 Capsicum annuum HOM05D006382 ORTHO05D008938 5.0e-168 595.1 366 77.3
Migut.B01800 Erythranthe guttata HOM05D006382 ORTHO05D008938 4.4e-164 582.0 487 60.6
Gohir.D11G097200 Gossypium hirsutum HOM05D006382 ORTHO05D008938 1.7e-163 580.1 421 67.7
Manes.05G029200 Manihot esculenta HOM05D006382 ORTHO05D008938 1.6e-158 563.5 376 72.1
TAR629G1903 Trochodendron aralioides HOM05D006382 ORTHO05D008938 8.3e-131 471.5 324 68.8
Cre03.g193700 Chlamydomonas reinhardtii HOM05D006382 ORTHO05D008938 1.2e-129 467.6 452 52.2
Oeu063676.1 Olea europaea HOM05D006382 ORTHO05D008938 7.3e-127 458.4 478 53.3
Potri.014G090601 Populus trichocarpa HOM05D006382 ORTHO05D008938 4.9e-115 419.1 270 74.4
MCO14G065 Micromonas commoda HOM05D006382 ORTHO05D008938 9.0e-109 398.3 475 46.3
Zm00001eb375690 Zea mays HOM05D006382 ORTHO05D008938 1.5e-108 397.5 276 67.4
PRCOL_00004635 Prasinoderma coloniale HOM05D006382 ORTHO05D008938 1.2e-105 387.9 463 46.9
Cfa025852 Carpinus fangiana HOM05D006382 ORTHO05D008938 4.8e-78 296.2 449 39.4
Os06g0163600 Oryza sativa ssp. japonica HOM05D006382 ORTHO05D008938 2.8e-38 164.1 100 73.0
SMO139G0016 Selaginella moellendorffii HOM05D006382 ORTHO05D376983 4.1e-37 160.2 226 38.9
Hma1.2p1_0036F.1_g022810 Hydrangea macrophylla HOM05D006382 ORTHO05D228417 3.0e-32 144.1 96 70.8
Hma1.2p1_0036F.1_g022815 Hydrangea macrophylla HOM05D006382 ORTHO05D228242 3.0e-32 144.1 96 70.8
Hma1.2p1_0515F.1_g170355 Hydrangea macrophylla HOM05D006382 ORTHO05D228454 3.0e-32 144.1 96 70.8
Hma1.2p1_1019F.1_g248455 Hydrangea macrophylla HOM05D006382 ORTHO05D228422 3.0e-32 144.1 96 70.8
BolC4t24936H Brassica oleracea HOM05D006382 ORTHO05D024383 7.5e-31 139.4 72 88.9
SMO165G0168 Selaginella moellendorffii HOM05D006382 ORTHO05D374182 3.4e-23 114.0 280 32.1
C04p33670 Brassica napus HOM05D006382 ORTHO05D024383 6.4e-22 109.8 57 89.5
BcaB04g18088 Brassica carinata HOM05D006382 ORTHO05D024383 1.4e-13 82.0 43 93.0
Ah.05g180150 Amaranthus hybridus HOM05D006382 ORTHO05D060446 3.6e-09 67.4 98 46.9
BcaC08g45232 Brassica carinata HOM05D000289 ORTHO05D000208 8.1e-09 66.2 42 71.4
Actinidia17930 Actinidia chinensis HOM05D006382 ORTHO05D008938 8.9e-08 62.8 41 75.6
CsaV3_3G008600 Cucumis sativus L. HOM05D006382 ORTHO05D172594 1.2e-07 62.4 40 70.0


User provided reference genes

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