Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 0.0e+00 1243.8 604 100.0
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 0.0e+00 1243.8 604 100.0
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 0.0e+00 1240.7 604 99.8
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 0.0e+00 1115.1 613 91.5
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 0.0e+00 1110.1 619 91.0
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 8.9e-281 969.9 640 78.3
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 6.4e-279 963.8 640 77.8
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 2.4e-278 961.8 646 77.6
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 2.4e-278 961.8 646 77.6
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 2.4e-278 961.8 656 76.1
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 9.2e-278 959.9 646 77.4
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 4.6e-277 957.6 647 77.0
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 3.9e-276 954.5 659 75.6
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 3.3e-267 924.9 656 75.0
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 1.7e-263 912.5 654 72.2
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 1.9e-254 882.5 656 72.1
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 7.1e-254 880.6 664 71.5
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 7.1e-254 880.6 650 71.4
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 2.6e-248 862.1 658 71.0
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 9.6e-243 843.6 653 67.7
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.8e-236 822.8 652 66.1
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 2.3e-236 822.4 654 66.5
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 6.7e-236 820.8 657 65.9
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 1.1e-235 820.1 647 66.3
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 5.6e-235 817.8 652 66.0
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 9.6e-235 817.0 652 66.0
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.3e-234 816.6 639 67.0
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.1e-233 813.5 640 66.9
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 1.5e-232 809.7 654 65.9
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.5e-232 809.7 636 66.5
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 9.9e-232 807.0 648 66.0
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 3.8e-231 805.1 654 65.4
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 5.5e-230 801.2 653 64.8
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 5.5e-230 801.2 654 64.5
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 4.6e-229 798.1 647 64.3
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 3.0e-228 795.4 653 65.4
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 3.3e-227 792.0 648 65.3
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 2.8e-226 788.9 650 64.8
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 2.8e-226 788.9 661 64.9
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 3.7e-226 788.5 651 65.0
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 8.2e-226 787.3 650 64.6
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.1e-225 786.9 659 63.3
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.8e-225 786.2 650 64.6
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 2.4e-225 785.8 658 64.4
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.0e-224 782.7 654 63.9
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 5.8e-224 781.2 650 64.3
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.3e-223 780.0 651 63.7
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 3.5e-221 771.9 661 62.6
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 6.0e-221 771.2 650 63.7
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 1.0e-220 770.4 652 63.5
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 1.5e-219 766.5 676 61.7
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 4.3e-219 765.0 656 63.3
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 2.2e-218 762.7 650 61.8
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 2.2e-218 762.7 650 61.8
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 1.1e-217 760.4 607 65.7
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 1.8e-217 759.6 634 63.9
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 3.1e-217 758.8 650 62.2
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 4.5e-216 755.0 649 61.9
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.0e-215 753.8 654 61.3
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 2.2e-215 752.7 637 62.6
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 3.2e-214 748.8 566 67.7
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 2.1e-213 746.1 613 63.5
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 3.6e-213 745.3 663 60.9
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 3.6e-213 745.3 663 60.9
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 2.5e-211 739.2 551 67.9
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 3.7e-210 735.3 661 61.4
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 6.3e-210 734.6 661 61.4
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 1.4e-209 733.4 642 61.4
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 3.4e-208 728.8 648 61.4
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 3.4e-208 728.8 654 60.9
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 5.5e-206 721.5 565 64.4
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.6e-205 719.9 554 65.7
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 2.7e-205 719.2 631 62.0
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 3.6e-205 718.8 616 63.0
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 1.4e-204 716.8 659 61.2
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 1.8e-204 716.5 604 62.4
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 5.1e-204 714.9 560 66.1
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 5.1e-204 714.9 540 67.6
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 6.7e-204 714.5 653 61.3
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.5e-203 713.4 671 58.9
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 7.4e-203 711.1 660 60.0
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 2.2e-202 709.5 618 62.6
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 3.7e-202 708.8 599 63.1
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 3.4e-200 702.2 609 62.6
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 5.9e-200 701.4 533 67.2
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.3e-199 700.3 555 64.5
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 1.7e-199 699.9 566 63.6
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 2.2e-199 699.5 621 62.3
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 3.8e-199 698.7 634 59.8
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 9.4e-198 694.1 692 56.1
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 2.3e-196 689.5 648 58.5
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 3.0e-196 689.1 675 56.7
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 1.1e-195 687.2 566 63.1
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 2.6e-195 686.0 682 56.5
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 4.8e-194 681.8 671 56.5
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 7.7e-192 674.5 551 63.2
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 3.8e-191 672.2 637 57.1
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 8.5e-191 671.0 646 57.4
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 1.4e-188 663.7 625 57.0
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 1.4e-188 663.7 669 56.2
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 4.0e-188 662.1 590 60.2
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 1.2e-187 660.6 553 62.4
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 1.5e-187 660.2 580 59.8
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 1.5e-187 660.2 616 58.6
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 1.5e-187 660.2 553 62.6
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 6.3e-186 654.8 669 55.6
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 8.2e-186 654.4 643 58.6
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 9.1e-185 651.0 536 63.2
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 1.6e-184 650.2 555 60.9
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 2.7e-184 649.4 670 54.6
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.0e-183 647.5 532 64.5
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.9e-182 643.3 603 57.4
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 1.2e-181 640.6 635 56.7
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 5.7e-179 631.7 510 64.9
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 2.0e-171 606.7 660 52.9
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 3.5e-168 595.9 663 51.9
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.6e-165 587.0 588 56.0
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 5.2e-164 582.0 640 53.0
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 2.0e-160 570.1 619 52.5
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 1.0e-159 567.8 639 51.8
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 6.2e-157 558.5 603 52.7
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 1.9e-153 547.0 668 49.1
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.2e-149 534.3 485 60.2
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 6.6e-143 511.9 538 54.3
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 8.1e-141 505.0 420 63.3
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 1.4e-140 504.2 490 57.1
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 7.1e-137 491.9 557 49.2
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 1.2e-136 491.1 425 60.7
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 6.9e-124 448.7 342 70.8
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 2.8e-117 426.8 381 57.2
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.5e-115 421.0 379 56.5
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 5.5e-113 412.5 338 63.3
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 5.0e-82 309.7 288 56.9
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 6.3e-77 292.7 525 40.6
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 2.9e-58 230.7 639 30.7
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 1.9e-57 228.0 619 31.5
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 3.4e-54 217.2 167 69.5
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 2.0e-38 164.9 151 57.0
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 1.1e-36 159.1 92 87.0
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 1.4e-36 158.7 193 52.3
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 3.3e-33 147.5 193 45.6
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 1.7e-29 135.2 76 84.2
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 2.9e-29 134.4 297 30.3
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 1.4e-20 105.5 101 52.5
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 3.9e-18 97.4 133 48.9
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 2.1e-16 91.7 161 36.0
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 1.1e-09 69.3 38 84.2
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 1.1e-09 69.3 147 38.8
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 1.5e-09 68.9 57 64.9


User provided reference genes

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