Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37777H Brassica oleracea HOM05D006659 ORTHO05D008372 5.9e-133 477.6 259 100.0
BcaC08g44982 Brassica carinata HOM05D006659 ORTHO05D008372 2.9e-132 475.3 259 99.2
C06p26120 Brassica napus HOM05D006659 ORTHO05D008372 6.6e-132 474.2 259 99.2
BraA07t30109Z Brassica rapa HOM05D006659 ORTHO05D008372 5.9e-125 451.1 261 95.8
A07p24640 Brassica napus HOM05D006659 ORTHO05D008372 1.1e-123 446.8 260 96.2
BcaB02g07470 Brassica carinata HOM05D006659 ORTHO05D008372 1.6e-117 426.4 259 88.0
Sp5g03740 Schrenkiella parvula HOM05D006659 ORTHO05D008372 8.9e-113 410.6 263 85.9
A09p51640 Brassica napus HOM05D006659 ORTHO05D008372 3.7e-111 405.2 260 83.5
BcaC07g40279 Brassica carinata HOM05D006659 ORTHO05D008372 1.9e-110 402.9 260 85.4
C08p34410 Brassica napus HOM05D006659 ORTHO05D008372 1.9e-110 402.9 260 85.4
BolC8t51042H Brassica oleracea HOM05D006659 ORTHO05D008372 1.9e-110 402.9 260 85.4
Thhalv10006183m.g Eutrema salsugineum HOM05D006659 ORTHO05D008372 1.6e-109 399.8 263 86.7
BraA09t40604Z Brassica rapa HOM05D006659 ORTHO05D008372 3.5e-109 398.7 260 83.1
BcaC07g40458 Brassica carinata HOM05D006659 ORTHO05D008372 2.6e-104 382.5 261 81.2
AL5G41300 Arabidopsis lyrata HOM05D006659 ORTHO05D008372 9.5e-99 364.0 269 79.6
AT3G59400 Arabidopsis thaliana HOM05D006659 ORTHO05D008372 3.8e-95 352.1 268 78.0
CARHR169790 Cardamine hirsuta HOM05D006659 ORTHO05D008372 8.4e-95 350.9 267 71.9
Carub.0005s2614 Capsella rubella HOM05D006659 ORTHO05D008372 4.2e-94 348.6 265 77.4
Aa31LG10G13750 Aethionema arabicum HOM05D006659 ORTHO05D008372 1.5e-83 313.5 264 71.2
THA.LOC104803695 Tarenaya hassleriana HOM05D006659 ORTHO05D008372 2.8e-74 282.7 264 64.0
THA.LOC104802307 Tarenaya hassleriana HOM05D006659 ORTHO05D008372 5.3e-73 278.5 266 58.6
Rhsim09G0027800 Rhododendron simsii HOM05D006659 ORTHO05D008372 1.1e-65 254.2 198 66.7
RhsimUnG0221100 Rhododendron simsii HOM05D006659 ORTHO05D008372 4.0e-65 252.3 198 66.7
Lj6C54T1 Lonicera japonica HOM05D006659 ORTHO05D008372 1.5e-64 250.4 183 66.7
GSVIVG01010754001 Vitis vinifera HOM05D006659 ORTHO05D008372 1.9e-62 243.4 195 62.1
PGR083G0301 Punica granatum HOM05D006659 ORTHO05D008372 4.2e-62 242.3 193 62.2
Thecc.04G179900 Theobroma cacao HOM05D006659 ORTHO05D008372 4.2e-62 242.3 194 64.4
Duzib151G0383 Durio zibethinus HOM05D006659 ORTHO05D008372 7.1e-62 241.5 266 54.9
Gohir.D10G129500 Gossypium hirsutum HOM05D006659 ORTHO05D008372 9.3e-62 241.1 189 64.6
Gorai.011G142800 Gossypium raimondii HOM05D006659 ORTHO05D008372 9.3e-62 241.1 189 64.6
ECA248G3871 Erigeron canadensis HOM05D006659 ORTHO05D008372 1.6e-61 240.4 185 64.9
Glyma.12G052500 Glycine max HOM05D006659 ORTHO05D008372 2.1e-61 240.0 261 51.7
Lalb_Chr03g0026131 Lupinus albus HOM05D006659 ORTHO05D008372 4.6e-61 238.8 267 51.7
Gohir.A10G137100 Gossypium hirsutum HOM05D006659 ORTHO05D008372 1.3e-60 237.3 189 63.5
Potri.017G030100 Populus trichocarpa HOM05D006659 ORTHO05D008372 3.0e-60 236.1 188 65.4
Duzib212G0569 Durio zibethinus HOM05D006659 ORTHO05D008372 8.7e-60 234.6 184 64.1
Potri.007G128200 Populus trichocarpa HOM05D006659 ORTHO05D008372 8.7e-60 234.6 236 60.2
Atru.chr3.1492 Acer truncatum HOM05D006659 ORTHO05D008372 3.3e-59 232.6 230 57.8
VMungo1127G1494 Vigna mungo HOM05D006659 ORTHO05D008372 3.3e-59 232.6 239 54.0
Prupe.1G193000 Prunus persica HOM05D006659 ORTHO05D008372 4.3e-59 232.3 249 55.0
EL10Ac3g05931 Beta vulgaris HOM05D006659 ORTHO05D008372 5.7e-59 231.9 266 52.6
Medtr4g067150 Medicago truncatula HOM05D006659 ORTHO05D008372 5.7e-59 231.9 266 51.9
RcHm_v2.0_Chr4g0406801 Rosa chinensis HOM05D006659 ORTHO05D008372 5.7e-59 231.9 197 61.9
MELO3C011657.2 Cucumis melo HOM05D006659 ORTHO05D008372 7.4e-59 231.5 193 62.2
QL10p048762 Quercus lobata HOM05D006659 ORTHO05D008372 7.4e-59 231.5 243 53.9
CSS0040017 Camellia sinensis var. sinensis HOM05D006659 ORTHO05D008372 9.7e-59 231.1 267 50.6
Sabra07G0104600 Salix brachista HOM05D006659 ORTHO05D008372 9.7e-59 231.1 190 62.6
Ah.07g201990 Amaranthus hybridus HOM05D006659 ORTHO05D008372 1.6e-58 230.3 207 58.9
Cpa.g.sc9.272 Carica papaya HOM05D006659 ORTHO05D008372 2.8e-58 229.6 198 60.6
MD04G1040300 Malus domestica HOM05D006659 ORTHO05D008372 2.8e-58 229.6 261 51.7
Gohir.A09G211000 Gossypium hirsutum HOM05D006659 ORTHO05D008372 3.7e-58 229.2 182 63.7
PGSC0003DMG400027013 Solanum tuberosum HOM05D006659 ORTHO05D008372 3.7e-58 229.2 195 61.5
Cc03_g13110 Coffea canephora HOM05D006659 ORTHO05D008372 4.8e-58 228.8 252 53.6
COL.COLO4_07662 Corchorus olitorius HOM05D006659 ORTHO05D008372 4.8e-58 228.8 182 63.2
Gohir.D09G204400 Gossypium hirsutum HOM05D006659 ORTHO05D008372 4.8e-58 228.8 182 63.7
Phvul.011G054500 Phaseolus vulgaris HOM05D006659 ORTHO05D008372 4.8e-58 228.8 198 60.6
TWI14G0225 Tripterygium wilfordii HOM05D006659 ORTHO05D008372 4.8e-58 228.8 191 63.4
TWI39G0181 Tripterygium wilfordii HOM05D006659 ORTHO05D008372 4.8e-58 228.8 191 63.4
CAN.G65.172 Capsicum annuum HOM05D006659 ORTHO05D008372 6.3e-58 228.4 202 60.4
FAN07G0020 Fragaria x ananassa HOM05D006659 ORTHO05D008372 6.3e-58 228.4 158 71.5
HanXRQChr01g0004971 Helianthus annuus HOM05D006659 ORTHO05D008372 6.3e-58 228.4 189 61.9
Sabra17G0019600 Salix brachista HOM05D006659 ORTHO05D008372 6.3e-58 228.4 193 61.1
TPR.G34236 Trifolium pratense HOM05D006659 ORTHO05D008372 8.2e-58 228.0 268 51.1
Gorai.006G228300 Gossypium raimondii HOM05D006659 ORTHO05D008372 1.1e-57 227.6 182 63.7
TAR362G1327 Trochodendron aralioides HOM05D006659 ORTHO05D008372 1.4e-57 227.3 265 56.6
FvH4_4g10790 Fragaria vesca HOM05D006659 ORTHO05D008372 1.8e-57 226.9 154 70.8
FAN12G1956 Fragaria x ananassa HOM05D006659 ORTHO05D008372 2.4e-57 226.5 153 71.2
Dinv22730 Davidia involucrata HOM05D006659 ORTHO05D008372 4.1e-57 225.7 174 64.4
PSO675G8713 Papaver somniferum HOM05D006659 ORTHO05D008372 4.1e-57 225.7 237 53.6
ClCG08G004640 Citrullus lanatus HOM05D006659 ORTHO05D008372 5.3e-57 225.3 264 54.9
CSS0046315 Camellia sinensis var. sinensis HOM05D006659 ORTHO05D008372 6.9e-57 224.9 267 50.9
Lsat_1_v5_gn_1_120661 Lactuca sativa HOM05D006659 ORTHO05D008372 6.9e-57 224.9 186 61.3
arahy.Tifrunner.gnm1.ann1.AVW0M7 Arachis hypogaea HOM05D006659 ORTHO05D008372 9.0e-57 224.6 279 47.7
Manes.11G120400 Manihot esculenta HOM05D006659 ORTHO05D008372 9.0e-57 224.6 197 58.9
Aqoxy2G04093 Aquilegia oxysepala HOM05D006659 ORTHO05D008372 1.2e-56 224.2 239 53.6
Dinv44193 Davidia involucrata HOM05D006659 ORTHO05D008372 1.2e-56 224.2 180 61.7
ATR0824G177 Amborella trichopoda HOM05D006659 ORTHO05D008372 1.5e-56 223.8 194 57.2
arahy.Tifrunner.gnm1.ann1.Q6M2DC Arachis hypogaea HOM05D006659 ORTHO05D008372 1.5e-56 223.8 279 47.3
PSO017G5731 Papaver somniferum HOM05D006659 ORTHO05D008372 1.5e-56 223.8 184 62.0
Os11g0267000 Oryza sativa ssp. japonica HOM05D006659 ORTHO05D008372 2.0e-56 223.4 190 59.5
Ca_20785_v3 Cicer arietinum L. HOM05D006659 ORTHO05D008372 2.6e-56 223.0 184 61.4
Psat7g214800 Pisum sativum HOM05D006659 ORTHO05D008372 2.6e-56 223.0 262 55.0
Zm00001eb406810 Zea mays HOM05D006659 ORTHO05D008372 3.4e-56 222.6 195 57.4
CiPaw.01G100500 Carya illinoinensis HOM05D006659 ORTHO05D008372 7.7e-56 221.5 203 56.7
Ciclev10021505m.g Citrus clementina HOM05D006659 ORTHO05D008372 1.3e-55 220.7 191 60.2
Sopen06g029650 Solanum pennellii HOM05D006659 ORTHO05D008372 1.3e-55 220.7 193 60.1
Solyc06g073290.1 Solanum lycopersicum HOM05D006659 ORTHO05D008372 1.7e-55 220.3 195 59.5
CANSAT78G0008 Cannabis sativa HOM05D006659 ORTHO05D008372 2.2e-55 219.9 195 60.0
MSTRG.24582 Avicennia marina HOM05D006659 ORTHO05D008372 3.8e-55 219.2 191 58.6
Nitab4.5_0008969g0010 Nicotiana tabacum HOM05D006659 ORTHO05D008372 3.8e-55 219.2 159 68.6
Oeu053837.1 Olea europaea HOM05D006659 ORTHO05D008372 3.8e-55 219.2 203 56.2
CsaV3_6G003920 Cucumis sativus L. HOM05D006659 ORTHO05D008372 5.0e-55 218.8 266 53.8
Actinidia35977 Actinidia chinensis HOM05D006659 ORTHO05D008372 1.1e-54 217.6 164 65.2
Migut.N03108 Erythranthe guttata HOM05D006659 ORTHO05D008372 1.9e-54 216.9 196 57.7
AUR62015391 Chenopodium quinoa HOM05D006283 ORTHO05D007727 2.5e-54 216.5 205 55.6
Lj3g0013401 Lotus japonicus HOM05D006659 ORTHO05D008372 3.2e-54 216.1 275 47.3
Lalb_Chr01g0003161 Lupinus albus HOM05D006659 ORTHO05D008372 3.2e-54 216.1 264 49.6
Sed0004224 Sechium edule HOM05D006659 ORTHO05D008372 5.5e-54 215.3 194 57.2
Sed0027988 Sechium edule HOM05D006659 ORTHO05D008372 9.4e-54 214.5 191 58.1
Haze_01513 Corylus avellana HOM05D006659 ORTHO05D008372 1.6e-53 213.8 264 47.7
MBI08_g14954_MAGBIO Magnolia biondii HOM05D006659 ORTHO05D008064 1.6e-53 213.8 240 52.1
unitig_578.g16263 Utricularia gibba HOM05D006659 ORTHO05D008372 7.9e-53 211.5 187 57.8
SalBow6G0037 Salvia bowleyana HOM05D006659 ORTHO05D008372 1.0e-52 211.1 186 59.1
SGA_v2.0_scaffold31G12575 Striga asiatica HOM05D006659 ORTHO05D008372 1.2e-48 197.6 167 59.3
Cfa015167 Carpinus fangiana HOM05D006659 ORTHO05D008372 2.0e-48 196.8 177 58.2
Glyma.11G127800 Glycine max HOM05D006659 ORTHO05D008372 7.7e-48 194.9 205 55.1
Manes.04G042918 Manihot esculenta HOM05D006659 ORTHO05D008372 2.7e-45 186.4 201 51.2
SEGI_36451 Sequoiadendron giganteum HOM05D006659 ORTHO05D008372 1.8e-44 183.7 148 60.1
AagrBONN_evm.TU.Sc2ySwM_228.5135 Anthoceros agrestis HOM05D006659 ORTHO05D008372 1.3e-39 167.5 141 56.0
Pp3c6_11210 Physcomitrium patens HOM05D006659 ORTHO05D008372 8.5e-39 164.9 157 52.2
Pp3c25_4400 Physcomitrium patens HOM05D006659 ORTHO05D008372 1.4e-38 164.1 157 51.6
Peaxi162Scf00413g00827 Petunia axillaris HOM05D006659 ORTHO05D008372 3.2e-38 162.9 195 50.8
VMungo1309G1939 Vigna mungo HOM05D006659 ORTHO05D008372 6.1e-37 158.7 239 43.9
CBR_g10809 Chara braunii HOM05D006659 ORTHO05D008372 1.4e-36 157.5 183 45.9
CDE04G1206 Ceratophyllum demersum HOM05D006659 ORTHO05D008372 3.0e-36 156.4 138 56.5
Cre05.g246800 Chlamydomonas reinhardtii HOM05D006659 ORTHO05D008372 1.1e-35 154.5 171 43.9
Mapoly0173s0019 Marchantia polymorpha HOM05D006659 ORTHO05D008372 1.5e-35 154.1 160 46.9
SMO170G0079 Selaginella moellendorffii HOM05D006659 ORTHO05D008372 4.4e-35 152.5 173 47.4
MCO04G521 Micromonas commoda HOM05D006659 ORTHO05D008372 7.7e-32 141.7 169 42.6
PRCOL_00006170 Prasinoderma coloniale HOM05D006659 ORTHO05D008372 3.6e-29 132.9 168 40.5
Oeu053835.1 Olea europaea HOM05D006659 ORTHO05D008372 1.0e-23 114.8 112 52.7
Eucgr.H00371 Eucalyptus grandis HOM05D006659 ORTHO05D008372 2.0e-19 100.5 109 51.4


User provided reference genes

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