Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37741H Brassica oleracea HOM05D000023 ORTHO05D000014 3.5e-65 251.5 130 100.0
BcaC08g44948 Brassica carinata HOM05D000023 ORTHO05D000014 4.5e-65 251.1 129 100.0
C06p25790 Brassica napus HOM05D000023 ORTHO05D000014 4.5e-65 251.1 129 100.0
BolC3t16229H Brassica oleracea HOM05D000023 ORTHO05D000014 1.3e-64 249.6 129 99.2
C02p50440 Brassica napus HOM05D000023 ORTHO05D000014 3.8e-64 248.1 129 93.8
BolC2t11123H Brassica oleracea HOM05D000023 ORTHO05D000014 3.8e-64 248.1 129 93.8
C07p40300 Brassica napus HOM05D000023 ORTHO05D000014 5.5e-63 244.2 129 99.2
BolC2t12125H Brassica oleracea HOM05D000023 ORTHO05D000014 5.5e-63 244.2 129 97.7
BraA09t37417Z Brassica rapa HOM05D000023 ORTHO05D000014 3.6e-62 241.5 126 96.8
A08p11410 Brassica napus HOM05D000023 ORTHO05D000014 3.0e-61 238.4 123 100.0
BolC9t57982H Brassica oleracea HOM05D000023 ORTHO05D000014 7.8e-49 197.2 130 75.4
A01p38030 Brassica napus HOM05D000023 ORTHO05D000014 2.3e-48 195.7 129 77.5
A06p21240 Brassica napus HOM05D000554 ORTHO05D011030 2.9e-48 195.3 129 78.3
C09p51190 Brassica napus HOM05D000023 ORTHO05D000014 1.4e-45 186.4 129 76.0
A05p26100 Brassica napus HOM05D000023 ORTHO05D000014 3.7e-43 178.3 129 74.4
BraA06t25311Z Brassica rapa HOM05D000023 ORTHO05D000014 3.0e-40 168.7 129 71.3
C03p28870 Brassica napus HOM05D000023 ORTHO05D000014 5.8e-28 127.9 101 71.3
BcaC05g26071 Brassica carinata HOM05D000023 ORTHO05D000014 2.9e-27 125.6 92 75.0
BolC5t30751H Brassica oleracea HOM05D000023 ORTHO05D000014 3.2e-26 122.1 73 76.7
BolC9t53194H Brassica oleracea HOM05D000023 ORTHO05D000014 9.2e-26 120.6 122 46.7
BraA06t27742Z Brassica rapa HOM05D000023 ORTHO05D000014 2.7e-25 119.0 128 52.3
A09p32160 Brassica napus HOM05D000023 ORTHO05D000014 3.5e-25 118.6 101 54.5
BraA09t38762Z Brassica rapa HOM05D000023 ORTHO05D000014 3.5e-25 118.6 101 54.5
BcaB08g36197 Brassica carinata HOM05D000023 ORTHO05D000014 6.2e-22 107.8 108 57.4
BolC9t57468H Brassica oleracea HOM05D000023 ORTHO05D000014 1.3e-19 100.1 130 49.2
BcaB03g15143 Brassica carinata HOM05D000023 ORTHO05D000014 1.7e-19 99.8 102 47.1
BcaC02g10465 Brassica carinata HOM05D000023 ORTHO05D000014 2.2e-19 99.4 102 56.9
BraA09t39254Z Brassica rapa HOM05D000023 ORTHO05D000014 3.8e-19 98.6 113 54.0
AL7G46890 Arabidopsis lyrata HOM05D000023 ORTHO05D000014 9.2e-18 94.0 100 48.0
HanXRQChr07g0186221 Helianthus annuus HOM05D000023 ORTHO05D000014 5.1e-16 88.2 109 44.0
BcaC09g49277 Brassica carinata HOM05D000023 ORTHO05D000014 1.5e-15 86.7 59 61.0
EL10Ac4g08499 Beta vulgaris HOM05D000023 ORTHO05D000014 2.5e-15 85.9 93 44.1
THA.LOC104820419 Tarenaya hassleriana HOM05D000023 ORTHO05D000014 2.5e-15 85.9 103 41.7
EL10Ac8g19642 Beta vulgaris HOM05D000023 ORTHO05D000014 3.3e-15 85.5 70 51.4
Hma1.2p1_2277F.1_g318670 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 4.8e-14 81.6 101 40.6
Hund05171 Selenicereus undatus HOM05D000023 ORTHO05D000014 6.2e-14 81.3 105 44.8
A07p03820 Brassica napus HOM05D000023 ORTHO05D000014 8.1e-14 80.9 81 53.1
SHI03890 Sapria himalayana HOM05D000023 ORTHO05D000014 1.1e-13 80.5 102 43.1
Hma1.2p1_0490F.1_g164210 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 2.4e-13 79.3 101 39.6
Hund10515 Selenicereus undatus HOM05D000023 ORTHO05D000014 3.1e-13 79.0 105 43.8
Hund18264 Selenicereus undatus HOM05D000023 ORTHO05D000014 3.1e-13 79.0 94 46.8
Hund22686 Selenicereus undatus HOM05D000023 ORTHO05D000014 4.0e-13 78.6 103 42.7
Hund06285 Selenicereus undatus HOM05D000023 ORTHO05D000014 5.3e-13 78.2 103 42.7
Hund30522 Selenicereus undatus HOM05D000023 ORTHO05D000014 5.3e-13 78.2 103 42.7
CSS0005925 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 6.9e-13 77.8 75 45.3
Hund04194 Selenicereus undatus HOM05D000023 ORTHO05D000014 6.9e-13 77.8 103 42.7
Hund04838 Selenicereus undatus HOM05D000023 ORTHO05D000014 6.9e-13 77.8 94 46.8
Hund10386 Selenicereus undatus HOM05D000023 ORTHO05D000014 6.9e-13 77.8 103 42.7
Hund11026 Selenicereus undatus HOM05D000023 ORTHO05D000014 6.9e-13 77.8 94 45.7
Hund22984 Selenicereus undatus HOM05D000023 ORTHO05D000014 6.9e-13 77.8 103 42.7
Hund23411 Selenicereus undatus HOM05D000023 ORTHO05D000014 6.9e-13 77.8 103 42.7
Hund25526 Selenicereus undatus HOM05D000023 ORTHO05D000014 6.9e-13 77.8 103 42.7
Hund26626 Selenicereus undatus HOM05D000023 ORTHO05D000014 6.9e-13 77.8 103 42.7
Hund31071 Selenicereus undatus HOM05D000023 ORTHO05D000014 6.9e-13 77.8 103 42.7
SHI21514 Sapria himalayana HOM05D000023 ORTHO05D000014 9.0e-13 77.4 102 43.1
Hund04191 Selenicereus undatus HOM05D000023 ORTHO05D000014 9.0e-13 77.4 103 42.7
Hund05820 Selenicereus undatus HOM05D000023 ORTHO05D000014 9.0e-13 77.4 103 42.7
Hund13497 Selenicereus undatus HOM05D000023 ORTHO05D000014 9.0e-13 77.4 103 41.7
Hund18176 Selenicereus undatus HOM05D000023 ORTHO05D000014 9.0e-13 77.4 103 41.7
Hund24696 Selenicereus undatus HOM05D000023 ORTHO05D000014 9.0e-13 77.4 94 45.7
Hund13150 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.2e-12 77.0 103 44.7
BcaC07g37282 Brassica carinata HOM05D026077 ORTHO05D000014 2.0e-12 76.3 77 50.6
Hund12079 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.0e-12 76.3 103 41.7
Hund23957 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.0e-12 76.3 103 41.7
Hund11626 Selenicereus undatus HOM05D000023 ORTHO05D000014 3.4e-12 75.5 93 44.1
Hund15093 Selenicereus undatus HOM05D000023 ORTHO05D000014 3.4e-12 75.5 96 44.8
Hund20085 Selenicereus undatus HOM05D000023 ORTHO05D000014 3.4e-12 75.5 101 42.6
Hund00488 Selenicereus undatus HOM05D000023 ORTHO05D000014 4.4e-12 75.1 123 39.0
Hund15138 Selenicereus undatus HOM05D000023 ORTHO05D000014 4.4e-12 75.1 93 44.1
Hund31325 Selenicereus undatus HOM05D000023 ORTHO05D000014 4.4e-12 75.1 103 41.7
BcaC01g00960 Brassica carinata HOM05D000023 ORTHO05D000014 7.6e-12 74.3 103 35.9
Hund01251 Selenicereus undatus HOM05D000023 ORTHO05D000014 9.9e-12 73.9 101 41.6
Hund04442 Selenicereus undatus HOM05D000023 ORTHO05D000014 9.9e-12 73.9 94 44.7
Hund31004 Selenicereus undatus HOM05D000023 ORTHO05D000014 9.9e-12 73.9 94 44.7
Hund24914 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.3e-11 73.6 126 38.9
CSS0049915 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 1.7e-11 73.2 92 40.2
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 2.9e-11 72.4 74 45.9
Hund14805 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.9e-11 72.4 126 38.1
MSTRG.23368 Avicennia marina HOM05D000023 ORTHO05D000014 3.8e-11 72.0 66 45.5
MBI06_g04760_MAGBIO Magnolia biondii HOM05D008170 ORTHO05D010746 3.8e-11 72.0 108 38.9
SHI30372 Sapria himalayana HOM05D000023 ORTHO05D000014 3.8e-11 72.0 122 37.7
QL02p096245 Quercus lobata HOM05D000023 ORTHO05D000014 4.9e-11 71.6 91 44.0
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 4.9e-11 71.6 105 39.0
Dinv32095 Davidia involucrata HOM05D009083 ORTHO05D011928 8.4e-11 70.9 95 37.9
QL10p011117 Quercus lobata HOM05D000023 ORTHO05D000014 8.4e-11 70.9 84 45.2
Hund24099 Selenicereus undatus HOM05D000023 ORTHO05D000014 8.4e-11 70.9 94 43.6
Dinv02991 Davidia involucrata HOM05D009083 ORTHO05D011928 2.4e-10 69.3 95 36.8
Dinv06593 Davidia involucrata HOM05D009083 ORTHO05D011928 2.4e-10 69.3 95 36.8
SHI36418 Sapria himalayana HOM05D000023 ORTHO05D000014 3.2e-10 68.9 81 45.7
Dinv08694 Davidia involucrata HOM05D009083 ORTHO05D011928 4.2e-10 68.6 95 36.8
Dinv24563 Davidia involucrata HOM05D009083 ORTHO05D011928 4.2e-10 68.6 95 36.8
Sopen10g007400 Solanum pennellii HOM05D000023 ORTHO05D000014 4.2e-10 68.6 101 37.6
Sopen10g005310 Solanum pennellii HOM05D000023 ORTHO05D000014 5.4e-10 68.2 101 37.6
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 7.1e-10 67.8 97 36.1
Dinv36737 Davidia involucrata HOM05D009083 ORTHO05D011928 7.1e-10 67.8 95 36.8
Sed0008376 Sechium edule HOM05D000023 ORTHO05D000014 7.1e-10 67.8 70 45.7
Dinv18192 Davidia involucrata HOM05D009083 ORTHO05D011928 9.3e-10 67.4 88 38.6
Hund14515 Selenicereus undatus HOM05D000023 ORTHO05D000014 9.3e-10 67.4 76 46.1
Hund01885 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.2e-09 67.0 89 42.7
Sopen01g050040 Solanum pennellii HOM05D000023 ORTHO05D000014 1.2e-09 67.0 101 37.6
CSS0026234 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 2.1e-09 66.2 66 47.0
Dinv19539 Davidia involucrata HOM05D009083 ORTHO05D011928 2.1e-09 66.2 95 35.8
Dinv12371 Davidia involucrata HOM05D009083 ORTHO05D011928 2.7e-09 65.9 95 35.8
CSS0016050 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 4.6e-09 65.1 66 47.0
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 4.6e-09 65.1 91 42.9
Atru.chr12.1140 Acer truncatum HOM05D000023 ORTHO05D009195 6.0e-09 64.7 71 46.5
Sopen01g010490 Solanum pennellii HOM05D000023 ORTHO05D000014 7.8e-09 64.3 92 39.1
TWI38G0158 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 7.8e-09 64.3 71 43.7
AT1G36095 Arabidopsis thaliana HOM05D000023 ORTHO05D000014 1.0e-08 63.9 77 33.8
Rhsim01G0183100 Rhododendron simsii HOM05D000023 ORTHO05D000014 1.0e-08 63.9 101 34.7
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 1.0e-08 63.9 59 50.8
Nitab4.5_0002586g0050 Nicotiana tabacum HOM05D000023 ORTHO05D002750 1.3e-08 63.5 98 35.7
SHI19411 Sapria himalayana HOM05D002606 ORTHO05D000014 1.3e-08 63.5 88 42.0
Prupe.2G058600 Prunus persica HOM05D000023 ORTHO05D000014 2.3e-08 62.8 71 43.7
QL04p050699 Quercus lobata HOM05D000023 ORTHO05D000014 2.3e-08 62.8 94 38.3
Lj9C56T3 Lonicera japonica HOM05D000023 ORTHO05D002750 3.0e-08 62.4 89 34.8
SGA_v2.0_scaffold327G48774 Striga asiatica HOM05D000023 ORTHO05D000014 3.0e-08 62.4 103 36.9
SHI05602 Sapria himalayana HOM05D000023 ORTHO05D000014 3.9e-08 62.0 84 40.5
Thhalv10012187m.g Eutrema salsugineum HOM05D026077 ORTHO05D032958 5.1e-08 61.6 103 31.1
Lj8P661T5 Lonicera japonica HOM05D000023 ORTHO05D002750 5.1e-08 61.6 89 33.7
MD02G1265900 Malus domestica HOM05D000023 ORTHO05D000014 5.1e-08 61.6 112 33.0
CSS0007228 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 6.6e-08 61.2 71 43.7
CSS0046865 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D008955 6.6e-08 61.2 71 43.7
SHI26731 Sapria himalayana HOM05D000105 ORTHO05D000023 6.6e-08 61.2 103 34.0
SHI12076 Sapria himalayana HOM05D007023 ORTHO05D008684 8.7e-08 60.8 85 41.2
THA.LOC104804899 Tarenaya hassleriana HOM05D000023 ORTHO05D000014 8.7e-08 60.8 135 33.3
Lj8P655T9 Lonicera japonica HOM05D000023 ORTHO05D002750 1.1e-07 60.5 89 33.7
GSVIVG01027351001 Vitis vinifera HOM05D000023 ORTHO05D000014 1.1e-07 60.5 95 37.9
C09p38450 Brassica napus HOM05D000023 ORTHO05D000014 1.5e-07 60.1 45 68.9
BolC9t56699H Brassica oleracea HOM05D000023 ORTHO05D000014 1.5e-07 60.1 45 68.9
ClCG08G008630 Citrullus lanatus HOM05D000023 ORTHO05D000014 1.5e-07 60.1 71 43.7
MELO3C019933.2 Cucumis melo HOM05D000023 ORTHO05D000014 1.5e-07 60.1 71 43.7
MELO3C022886.2 Cucumis melo HOM05D000023 ORTHO05D002750 1.5e-07 60.1 75 40.0
CsaV3_6G004650 Cucumis sativus L. HOM05D000023 ORTHO05D000014 1.5e-07 60.1 71 43.7
Lj1P332T15 Lonicera japonica HOM05D000023 ORTHO05D000014 1.5e-07 60.1 89 33.7
Lj6P498T15 Lonicera japonica HOM05D000023 ORTHO05D002750 1.5e-07 60.1 89 33.7
Hund20670 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.5e-07 60.1 56 50.0
SGA_v2.0_scaffold17G08089 Striga asiatica HOM05D000023 ORTHO05D000014 1.5e-07 60.1 124 33.9
Zm00001eb349030 Zea mays HOM05D000023 ORTHO05D000014 1.5e-07 60.1 73 37.0
Lj2C491G6 Lonicera japonica HOM05D000023 ORTHO05D002750 1.9e-07 59.7 89 32.6
Sed0017071 Sechium edule HOM05D000023 ORTHO05D000014 1.9e-07 59.7 71 43.7
PGSC0003DMG400044990 Solanum tuberosum HOM05D009083 ORTHO05D010901 1.9e-07 59.7 90 37.8
Aqoxy5G01955 Aquilegia oxysepala HOM05D009083 ORTHO05D010901 2.5e-07 59.3 109 33.9
Lj2P444T7 Lonicera japonica HOM05D000023 ORTHO05D002750 2.5e-07 59.3 66 37.9
Nn2g14678 Nelumbo nucifera HOM05D000023 ORTHO05D000014 2.5e-07 59.3 86 38.4
Nn1g01508 Nelumbo nucifera HOM05D000023 ORTHO05D012305 3.3e-07 58.9 66 42.4
PSO210G1900 Papaver somniferum HOM05D000023 ORTHO05D000014 4.3e-07 58.5 70 42.9
PSO210G5463 Papaver somniferum HOM05D000023 ORTHO05D000014 4.3e-07 58.5 70 42.9
Aqoxy1G00641 Aquilegia oxysepala HOM05D000023 ORTHO05D000014 5.6e-07 58.2 116 31.0
PSO170G4702 Papaver somniferum HOM05D000023 ORTHO05D000014 5.6e-07 58.2 65 41.5
Thhalv10002225m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 7.3e-07 57.8 39 51.3
Lj1g0007652 Lotus japonicus HOM05D000023 ORTHO05D000014 7.3e-07 57.8 93 29.0
Zm00001eb398480 Zea mays HOM05D000023 ORTHO05D010901 7.3e-07 57.8 99 36.4
Lj1g0008556 Lotus japonicus HOM05D000023 ORTHO05D000014 9.6e-07 57.4 71 40.8
SHI15393 Sapria himalayana HOM05D000023 ORTHO05D000014 9.6e-07 57.4 67 46.3
Aqoxy1G00882 Aquilegia oxysepala HOM05D000023 ORTHO05D011312 1.3e-06 57.0 109 32.1
Glyma.17G215100 Glycine max HOM05D000023 ORTHO05D000014 1.3e-06 57.0 68 42.6
Lj9P677T25 Lonicera japonica HOM05D000023 ORTHO05D002750 1.3e-06 57.0 64 37.5
Os01g0547200 Oryza sativa ssp. japonica HOM05D004258 ORTHO05D011312 1.3e-06 57.0 98 31.6
SHI25354 Sapria himalayana HOM05D000023 ORTHO05D000014 1.3e-06 57.0 78 39.7
Sopen07g004430 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-06 57.0 103 33.0
CSS0017113 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 1.6e-06 56.6 66 40.9
ECA236G3681 Erigeron canadensis HOM05D011018 ORTHO05D010901 2.1e-06 56.2 103 35.9
Glyma.09G000200 Glycine max HOM05D000023 ORTHO05D000014 2.1e-06 56.2 68 41.2
Lj8P366T21 Lonicera japonica HOM05D000023 ORTHO05D002750 2.1e-06 56.2 64 37.5
QL11p007092 Quercus lobata HOM05D000412 ORTHO05D000429 2.1e-06 56.2 65 41.5
Glyma.09G104100 Glycine max HOM05D000023 ORTHO05D000014 2.8e-06 55.8 68 42.6
Glyma.10G121900 Glycine max HOM05D000023 ORTHO05D000014 2.8e-06 55.8 68 41.2
SHI12545 Sapria himalayana HOM05D000023 ORTHO05D000014 2.8e-06 55.8 104 37.5
Glyma.01G121600 Glycine max HOM05D000023 ORTHO05D000014 3.6e-06 55.5 68 41.2
Glyma.06G230700 Glycine max HOM05D000023 ORTHO05D000014 3.6e-06 55.5 68 41.2
Glyma.13G192700 Glycine max HOM05D000023 ORTHO05D000014 3.6e-06 55.5 68 41.2
Glyma.20G074600 Glycine max HOM05D000023 ORTHO05D000014 3.6e-06 55.5 68 41.2
Lj4P320T20 Lonicera japonica HOM05D000023 ORTHO05D002750 3.6e-06 55.5 85 32.9
SHI12578 Sapria himalayana HOM05D000023 ORTHO05D024958 3.6e-06 55.5 75 40.0
Hund16692 Selenicereus undatus HOM05D000023 ORTHO05D005162 3.6e-06 55.5 74 43.2
Hund30017 Selenicereus undatus HOM05D000023 ORTHO05D000014 3.6e-06 55.5 74 43.2
SGA_v2.0_scaffold281G46900 Striga asiatica HOM05D000023 ORTHO05D000014 3.6e-06 55.5 88 36.4
Glyma.07G171900 Glycine max HOM05D000023 ORTHO05D000014 4.8e-06 55.1 118 30.5
Glyma.12G152900 Glycine max HOM05D000023 ORTHO05D000014 4.8e-06 55.1 73 38.4
Lj9P644T38 Lonicera japonica HOM05D000023 ORTHO05D002750 4.8e-06 55.1 89 30.3
TWI63G1250 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 4.8e-06 55.1 89 33.7
Glyma.02G159600 Glycine max HOM05D000023 ORTHO05D000014 6.2e-06 54.7 66 42.4
Sp4g08310 Schrenkiella parvula HOM05D055117 ORTHO05D050825 6.2e-06 54.7 51 47.1
Glyma.20G072800 Glycine max HOM05D000023 ORTHO05D000014 8.1e-06 54.3 71 38.0
Lj2g0005504 Lotus japonicus HOM05D000023 ORTHO05D000014 8.1e-06 54.3 108 26.9
SHI32655 Sapria himalayana HOM05D000023 ORTHO05D024958 8.1e-06 54.3 70 45.7


User provided reference genes

Program Settings