Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 3.6e-121 438.3 231 100.0
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 6.5e-91 337.8 226 82.7
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 4.2e-90 335.1 226 81.9
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 5.5e-90 334.7 226 82.3
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 9.4e-90 334.0 226 81.9
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 1.6e-89 333.2 226 81.4
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 2.1e-89 332.8 226 81.4
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 1.2e-87 327.0 226 80.1
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 3.4e-87 325.5 226 79.6
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 1.4e-85 320.1 226 77.9
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 2.7e-84 315.8 226 76.5
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 3.5e-84 315.5 226 77.0
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 3.5e-84 315.5 226 77.0
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 3.8e-83 312.0 226 78.8
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 3.6e-81 305.4 230 77.4
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 8.9e-80 300.8 226 73.9
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 8.9e-80 300.8 226 73.5
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 8.9e-80 300.8 226 73.9
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 8.9e-80 300.8 226 73.9
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 1.5e-79 300.1 229 76.4
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 2.0e-79 299.7 253 70.4
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 4.4e-79 298.5 226 76.5
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 7.5e-79 297.7 253 70.0
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 9.8e-79 297.4 253 70.4
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 1.3e-78 297.0 241 73.0
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 4.9e-78 295.0 230 72.2
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 5.4e-77 291.6 268 63.4
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 6.6e-75 284.6 253 68.4
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 1.1e-74 283.9 253 68.4
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 8.0e-73 277.7 215 69.8
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 1.7e-70 270.0 226 64.6
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 2.2e-70 269.6 226 64.2
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 4.9e-70 268.5 226 64.6
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 8.3e-70 267.7 226 64.6
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 3.2e-69 265.8 226 64.6
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 3.2e-69 265.8 226 64.6
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 3.2e-69 265.8 226 64.6
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 3.2e-69 265.8 226 64.2
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 7.0e-69 264.6 225 64.9
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 1.6e-68 263.5 226 64.2
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 2.0e-68 263.1 226 63.7
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.0e-67 260.8 226 62.8
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 1.3e-67 260.4 226 63.3
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 1.7e-67 260.0 226 61.5
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 2.3e-67 259.6 226 62.4
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 3.0e-67 259.2 224 62.5
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 3.9e-67 258.8 226 63.3
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 6.6e-67 258.1 226 62.4
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 6.6e-67 258.1 226 63.7
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 8.6e-67 257.7 226 62.8
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 8.6e-67 257.7 226 62.4
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 8.6e-67 257.7 226 61.5
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 1.1e-66 257.3 226 62.4
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 1.1e-66 257.3 226 61.1
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 1.1e-66 257.3 226 60.2
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.5e-66 256.9 223 63.7
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 1.9e-66 256.5 226 61.9
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 2.5e-66 256.1 227 68.7
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 3.3e-66 255.8 226 62.4
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 3.3e-66 255.8 222 63.5
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 3.3e-66 255.8 226 61.9
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 3.3e-66 255.8 226 61.9
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 4.3e-66 255.4 223 62.8
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 7.3e-66 254.6 226 61.5
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 9.5e-66 254.2 223 62.8
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.2e-65 253.8 226 61.5
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.2e-65 253.8 226 61.5
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 1.2e-65 253.8 226 60.2
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 1.6e-65 253.4 226 61.1
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 2.1e-65 253.1 226 61.1
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 3.6e-65 252.3 211 64.9
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.6e-65 252.3 226 61.5
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 4.7e-65 251.9 226 61.1
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 6.2e-65 251.5 223 61.9
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 8.0e-65 251.1 226 62.8
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 8.0e-65 251.1 226 61.1
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.4e-64 250.4 227 61.2
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 1.4e-64 250.4 226 61.1
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 1.4e-64 250.4 226 60.6
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 1.8e-64 250.0 222 62.2
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 2.3e-64 249.6 227 60.4
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 3.1e-64 249.2 223 61.9
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 5.2e-64 248.4 223 61.4
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 1.2e-63 247.3 222 62.2
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 2.6e-63 246.1 226 58.0
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 2.6e-63 246.1 219 62.1
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 2.6e-63 246.1 219 62.1
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 4.4e-63 245.4 223 61.9
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 4.4e-63 245.4 237 59.5
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 1.3e-62 243.8 223 61.0
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.3e-62 243.8 225 59.6
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 1.7e-62 243.4 223 60.5
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 1.7e-62 243.4 223 61.9
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 1.7e-62 243.4 223 60.5
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 2.2e-62 243.0 256 55.5
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 2.2e-62 243.0 222 62.2
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 6.4e-62 241.5 226 58.8
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 6.4e-62 241.5 223 60.1
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 6.4e-62 241.5 223 61.0
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 2.4e-61 239.6 222 59.5
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 3.2e-61 239.2 226 58.8
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 3.2e-61 239.2 226 58.0
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 3.2e-61 239.2 223 60.1
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 4.1e-61 238.8 226 58.8
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 5.4e-61 238.4 242 56.6
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.2e-60 237.3 240 56.2
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 1.2e-60 237.3 230 57.4
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 1.2e-60 237.3 222 59.5
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 1.6e-60 236.9 224 58.0
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 2.1e-60 236.5 223 59.2
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 4.6e-60 235.3 226 57.1
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.0e-59 234.2 226 59.3
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 3.9e-59 232.3 233 57.9
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.6e-57 226.9 221 58.4
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 6.2e-57 224.9 233 59.7
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.1e-56 224.2 221 57.0
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 3.1e-56 222.6 221 57.0
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 3.1e-56 222.6 217 56.7
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 3.1e-56 222.6 318 46.2
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 2.6e-55 219.5 214 62.6
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 2.6e-55 219.5 220 55.0
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 5.8e-55 218.4 281 49.1
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 5.8e-55 218.4 220 54.1
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 3.7e-54 215.7 218 57.3
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 8.3e-54 214.5 223 55.6
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 3.2e-53 212.6 222 55.4
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 6.6e-51 204.9 268 48.9
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 8.6e-51 204.5 211 55.5
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 9.5e-50 201.1 189 59.8
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 3.8e-46 189.1 222 48.2
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 6.4e-46 188.3 215 51.2
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 2.4e-45 186.4 226 46.9
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 4.2e-45 185.7 215 49.3
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 4.2e-45 185.7 215 49.8
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 9.2e-45 184.5 215 48.4
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 1.2e-44 184.1 219 49.3
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 7.8e-44 181.4 221 46.6
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 9.6e-42 174.5 159 61.0
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 9.6e-42 174.5 159 61.0
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-40 170.6 102 90.2
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 1.8e-40 170.2 229 44.1
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 6.9e-40 168.3 228 43.9
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 9.0e-40 167.9 156 60.3
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 1.4e-37 160.6 228 47.8
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 1.7e-30 137.1 217 42.4
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 3.5e-28 129.4 89 73.0
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.3e-27 126.7 222 40.1
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 2.5e-26 123.2 95 72.6
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 2.8e-25 119.8 249 39.8
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 4.0e-24 115.9 83 74.7
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 3.4e-23 112.8 110 60.0
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.2e-22 110.2 96 63.5
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 2.1e-20 103.6 89 66.3
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 3.9e-19 99.4 112 53.6
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 8.7e-19 98.2 52 98.1
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 1.1e-18 97.8 52 96.2
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 1.1e-18 97.8 52 96.2
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 2.5e-18 96.7 52 96.2
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 1.3e-17 94.4 52 94.2
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 1.3e-17 94.4 89 55.1
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 4.8e-17 92.4 50 94.0
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.1e-16 91.3 81 61.7
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 1.2e-15 87.8 147 40.1
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 2.0e-15 87.0 69 63.8
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.0e-15 87.0 64 64.1
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.2e-14 83.6 68 58.8
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 2.2e-14 83.6 68 58.8
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.9e-14 83.2 71 67.6
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 1.1e-13 81.3 70 61.4
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 1.4e-13 80.9 68 58.8
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.5e-13 80.1 68 55.9
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 2.5e-13 80.1 63 61.9
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 1.6e-12 77.4 211 28.9
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 3.5e-12 76.3 212 29.2
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 6.0e-12 75.5 48 81.2
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 1.0e-11 74.7 53 67.9
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.1e-10 71.2 54 64.8
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 2.5e-10 70.1 77 50.6
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 5.7e-10 68.9 152 32.9
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 1.5e-07 60.8 40 77.5
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 2.0e-07 60.5 76 47.4


User provided reference genes

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