Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 0.0e+00 1357.4 778 100.0
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 0.0e+00 1354.3 778 99.9
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 0.0e+00 1335.1 779 98.6
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 0.0e+00 1266.9 785 94.1
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 0.0e+00 1156.4 784 86.5
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 1.1e-310 1069.7 817 80.7
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 1.3e-300 1036.2 812 74.0
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 7.2e-283 977.2 793 71.2
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 3.2e-259 898.7 815 65.2
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.6e-258 896.3 819 66.2
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.3e-252 876.7 817 65.0
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 6.1e-250 867.8 799 62.7
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 1.0e-233 813.9 661 76.6
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 7.6e-184 648.3 810 53.0
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.7e-159 567.4 732 53.7
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 9.7e-155 551.6 783 49.3
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.1e-134 485.0 673 45.5
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 2.3e-119 434.1 815 39.9
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 8.3e-114 415.6 794 40.9
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 1.1e-113 415.2 806 41.7
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.1e-113 415.2 780 41.4
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 1.1e-113 415.2 794 40.9
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 2.5e-110 404.1 702 40.3
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 6.8e-108 396.0 777 40.2
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 8.9e-108 395.6 703 41.5
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 5.8e-107 392.9 691 41.0
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 4.6e-104 383.3 693 42.1
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 6.0e-104 382.9 224 98.7
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 4.3e-102 376.7 692 39.9
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 1.2e-101 375.2 800 37.8
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 3.6e-101 373.6 616 42.9
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 3.6e-101 373.6 750 40.0
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 4.7e-101 373.2 796 38.1
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 1.2e-99 368.6 783 39.3
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 2.0e-99 367.9 787 38.5
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 2.6e-99 367.5 709 39.9
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 5.8e-99 366.3 816 38.0
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 7.5e-99 365.9 794 38.3
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 2.2e-98 364.4 714 39.1
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 3.7e-98 363.6 764 40.1
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 4.9e-98 363.2 786 36.4
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 1.1e-97 362.1 726 40.4
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 1.4e-97 361.7 761 39.0
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 2.4e-97 360.9 699 38.6
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 4.1e-97 360.1 701 42.7
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 5.4e-97 359.8 683 39.7
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 7.1e-97 359.4 673 37.9
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 1.2e-96 358.6 781 38.2
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 2.1e-96 357.8 701 41.7
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 2.7e-96 357.5 806 36.5
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 4.6e-96 356.7 809 38.2
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 2.3e-95 354.4 723 38.6
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 8.6e-95 352.4 812 37.2
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 4.3e-94 350.1 662 36.7
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 1.6e-93 348.2 787 37.1
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 3.1e-92 344.0 801 36.1
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 4.0e-92 343.6 798 37.0
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 6.4e-90 336.3 670 37.6
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 3.2e-89 334.0 657 35.9
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 5.4e-89 333.2 668 36.7
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 9.2e-89 332.4 754 36.9
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 2.7e-88 330.9 711 36.3
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 1.0e-87 328.9 779 37.5
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.0e-87 328.9 678 35.8
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 1.0e-87 328.9 779 35.8
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 6.6e-87 326.2 708 36.6
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 1.1e-86 325.5 690 38.0
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 1.5e-86 325.1 736 40.1
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.6e-85 321.6 740 39.3
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 4.7e-85 320.1 735 37.8
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 4.7e-85 320.1 780 37.6
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 1.5e-83 315.1 682 37.2
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 1.5e-83 315.1 727 38.8
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 2.0e-83 314.7 682 36.1
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 7.6e-83 312.8 867 35.8
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 8.4e-82 309.3 691 36.8
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 4.2e-81 307.0 747 38.4
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 2.1e-80 304.7 664 36.3
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 1.0e-79 302.4 685 34.7
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 8.7e-79 299.3 694 34.4
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 1.5e-78 298.5 690 35.1
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 1.3e-77 295.4 674 34.3
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 1.1e-76 292.4 747 36.3
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 3.1e-76 290.8 690 36.4
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 9.0e-76 289.3 826 34.7
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 1.5e-75 288.5 681 33.3
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 2.0e-75 288.1 794 31.9
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 4.5e-75 287.0 703 34.7
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 2.9e-74 284.3 674 35.9
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 6.4e-74 283.1 714 31.9
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 8.4e-74 282.7 857 31.0
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 3.5e-72 277.3 801 36.5
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 6.7e-71 273.1 681 33.5
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 6.7e-71 273.1 688 33.3
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 3.3e-70 270.8 703 31.2
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 9.6e-70 269.2 880 31.0
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 4.0e-68 263.8 684 32.7
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 9.0e-68 262.7 718 34.7
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 2.0e-67 261.5 734 31.3
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 7.6e-67 259.6 652 30.8
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 5.5e-65 253.4 682 29.8
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 3.9e-63 247.3 816 33.6
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 4.3e-62 243.8 799 30.2
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 2.4e-60 238.0 633 35.5
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 5.3e-60 236.9 810 29.3
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 4.5e-59 233.8 939 27.6
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 1.3e-55 222.2 194 54.1
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 2.3e-55 221.5 737 28.6
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.9e-54 218.4 719 29.1
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 4.3e-54 217.2 632 33.2
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 1.3e-53 215.7 969 30.4
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 6.3e-53 213.4 302 45.0
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 1.8e-52 211.8 634 34.2
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 1.5e-51 208.8 661 31.2
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 3.4e-51 207.6 603 30.2
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 2.0e-46 191.8 672 28.7
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 4.8e-45 187.2 661 25.7
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 3.1e-44 184.5 276 42.4
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 1.6e-40 172.2 429 35.4
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 6.7e-39 166.8 695 25.8
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 6.3e-37 160.2 274 38.3
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 1.2e-35 156.0 133 54.9
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 2.6e-35 154.8 217 40.6
THA.LOC104802250 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 2.8e-29 134.8 164 53.0
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 2.4e-28 131.7 150 43.3
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 1.2e-27 129.4 133 54.1
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 8.5e-26 123.2 233 38.2
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 1.5e-22 112.5 780 27.6
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 2.8e-21 108.2 384 31.8
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 2.8e-21 108.2 144 47.2
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 3.2e-17 94.7 226 34.5
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 5.5e-17 94.0 203 33.0
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 7.2e-17 93.6 198 36.9
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 6.1e-16 90.5 216 30.1
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 4.4e-14 84.3 515 26.8
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 1.3e-13 82.8 222 33.3
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 5.0e-10 70.9 75 50.7
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 8.6e-10 70.1 125 36.8


User provided reference genes

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