Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37548H Brassica oleracea HOM05D006876 ORTHO05D040197 1.1e-110 403.3 200 100.0
C06p23790 Brassica napus HOM05D006876 ORTHO05D040197 3.3e-107 391.7 200 97.5
Sp5g05770 Schrenkiella parvula HOM05D006876 ORTHO05D008708 1.6e-13 80.5 64 67.2
CARHR166970 Cardamine hirsuta HOM05D006876 ORTHO05D008708 2.1e-13 80.1 64 67.2
BcaC07g39992 Brassica carinata HOM05D006876 ORTHO05D008708 2.8e-13 79.7 64 65.6
A09p49640 Brassica napus HOM05D006876 ORTHO05D008708 2.8e-13 79.7 64 65.6
C08p32050 Brassica napus HOM05D006876 ORTHO05D008708 2.8e-13 79.7 64 65.6
BolC8t50823H Brassica oleracea HOM05D006876 ORTHO05D008708 2.8e-13 79.7 64 65.6
BraA09t40417Z Brassica rapa HOM05D006876 ORTHO05D008708 2.8e-13 79.7 64 65.6
Thhalv10006232m.g Eutrema salsugineum HOM05D006876 ORTHO05D008708 2.8e-13 79.7 64 65.6
Carub.0005s2355 Capsella rubella HOM05D006876 ORTHO05D008708 6.2e-13 78.6 64 65.6
BcaC07g40117 Brassica carinata HOM05D006876 ORTHO05D008708 1.1e-12 77.8 64 64.1
AL5G38200 Arabidopsis lyrata HOM05D006876 ORTHO05D008708 1.8e-12 77.0 64 65.6
AT3G56820 Arabidopsis thaliana HOM05D006876 ORTHO05D008708 1.8e-12 77.0 64 65.6
Dinv13650 Davidia involucrata HOM05D006876 ORTHO05D008708 1.2e-11 74.3 65 61.5
Aa31LG10G11670 Aethionema arabicum HOM05D006876 ORTHO05D008708 7.6e-11 71.6 64 59.4
THA.LOC104803253 Tarenaya hassleriana HOM05D006876 ORTHO05D008708 7.6e-11 71.6 53 66.0
Cpa.g.sc33.174 Carica papaya HOM05D006876 ORTHO05D008708 1.7e-10 70.5 53 64.2
CSS0024544 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 2.2e-10 70.1 65 55.4
Oeu032953.2 Olea europaea HOM05D006876 ORTHO05D008708 3.8e-10 69.3 55 65.5
Prupe.7G023500 Prunus persica HOM05D006876 ORTHO05D008708 4.9e-10 68.9 54 64.8
Peaxi162Scf00003g05358 Petunia axillaris HOM05D006876 ORTHO05D008708 6.4e-10 68.6 53 64.2
CiPaw.09G161500 Carya illinoinensis HOM05D006876 ORTHO05D008708 1.1e-09 67.8 53 60.4
Atru.chr8.919 Acer truncatum HOM05D006876 ORTHO05D008708 1.4e-09 67.4 53 62.3
PSO339G4949 Papaver somniferum HOM05D006876 ORTHO05D008708 1.9e-09 67.0 53 58.5
PSO384G4569 Papaver somniferum HOM05D006876 ORTHO05D008708 1.9e-09 67.0 53 58.5
PGSC0003DMG400007191 Solanum tuberosum HOM05D006876 ORTHO05D008708 2.4e-09 66.6 53 66.0
Actinidia37859 Actinidia chinensis HOM05D006876 ORTHO05D008708 3.2e-09 66.2 108 42.6
Nitab4.5_0000123g0090 Nicotiana tabacum HOM05D006876 ORTHO05D008708 3.2e-09 66.2 53 64.2
Sopen10g028620 Solanum pennellii HOM05D006876 ORTHO05D008708 3.2e-09 66.2 53 64.2
unitig_899.g15477 Utricularia gibba HOM05D006876 ORTHO05D008708 3.2e-09 66.2 63 50.8
MSTRG.10760 Avicennia marina HOM05D006876 ORTHO05D008708 4.1e-09 65.9 53 62.3
Lalb_Chr24g0400801 Lupinus albus HOM05D006876 ORTHO05D008708 4.1e-09 65.9 72 48.6
Migut.K00190 Erythranthe guttata HOM05D006876 ORTHO05D008708 5.4e-09 65.5 55 60.0
Hma1.2p1_0694F.1_g204340 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 5.4e-09 65.5 72 50.0
Hma1.2p1_0694F.1_g204350 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 5.4e-09 65.5 72 50.0
Nitab4.5_0002131g0070 Nicotiana tabacum HOM05D006876 ORTHO05D008708 5.4e-09 65.5 53 64.2
MELO3C019167.2 Cucumis melo HOM05D006876 ORTHO05D008708 7.1e-09 65.1 73 49.3
Migut.K00192 Erythranthe guttata HOM05D006876 ORTHO05D008708 9.2e-09 64.7 55 60.0
MD12G1111100 Malus domestica HOM05D006876 ORTHO05D008708 9.2e-09 64.7 73 45.2
ClCG04G005040 Citrullus lanatus HOM05D006876 ORTHO05D008708 1.2e-08 64.3 73 49.3
CsaV3_4G029000 Cucumis sativus L. HOM05D006876 ORTHO05D008708 1.2e-08 64.3 73 49.3
Cc06_g21190 Coffea canephora HOM05D006876 ORTHO05D008708 1.6e-08 63.9 53 60.4
QL07p015416 Quercus lobata HOM05D006876 ORTHO05D008708 1.6e-08 63.9 73 50.7
Solyc10g076930.2 Solanum lycopersicum HOM05D006876 ORTHO05D008708 1.6e-08 63.9 53 64.2
FAN19G1913 Fragaria x ananassa HOM05D006876 ORTHO05D008708 2.1e-08 63.5 54 57.4
QL05p085390 Quercus lobata HOM05D006876 ORTHO05D008708 2.1e-08 63.5 61 57.4
Aqoxy1G01501 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 2.7e-08 63.2 53 60.4
Aqoxy1G01505 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 2.7e-08 63.2 53 60.4
CSS0021314 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 2.7e-08 63.2 65 50.8
QL05p001731 Quercus lobata HOM05D006876 ORTHO05D008708 2.7e-08 63.2 54 61.1
Lj1g0024709 Lotus japonicus HOM05D006876 ORTHO05D008708 3.5e-08 62.8 72 50.0
QL05p001451 Quercus lobata HOM05D006876 ORTHO05D008708 3.5e-08 62.8 92 40.2
GSVIVG01025828001 Vitis vinifera HOM05D006876 ORTHO05D008708 3.5e-08 62.8 73 46.6
FAN28G2491 Fragaria x ananassa HOM05D006876 ORTHO05D008708 4.6e-08 62.4 54 57.4
RhsimUnG0021300 Rhododendron simsii HOM05D006876 ORTHO05D008708 4.6e-08 62.4 53 60.4
SalBow1G4764 Salvia bowleyana HOM05D006876 ORTHO05D008708 4.6e-08 62.4 52 57.7
Thecc.05G117700 Theobroma cacao HOM05D006876 ORTHO05D008708 4.6e-08 62.4 50 62.0
TWI53G1364 Tripterygium wilfordii HOM05D006876 ORTHO05D008708 4.6e-08 62.4 73 45.2
DCAR_020618 Daucus carota HOM05D006876 ORTHO05D008708 6.0e-08 62.0 53 58.5
RcHm_v2.0_Chr7g0183121 Rosa chinensis HOM05D006876 ORTHO05D008708 6.0e-08 62.0 54 59.3
Hund24492 Selenicereus undatus HOM05D006876 ORTHO05D008708 7.8e-08 61.6 54 61.1
Duzib114G0933 Durio zibethinus HOM05D006876 ORTHO05D008708 1.3e-07 60.8 51 56.9
Gohir.D13G092600 Gossypium hirsutum HOM05D006876 ORTHO05D008708 1.3e-07 60.8 54 53.7
Gorai.010G139600 Gossypium raimondii HOM05D006876 ORTHO05D008708 1.3e-07 60.8 54 53.7
vmacro07595 Vaccinium macrocarpon HOM05D006876 ORTHO05D008708 1.3e-07 60.8 53 58.5
COL.COLO4_21445 Corchorus olitorius HOM05D006876 ORTHO05D008708 1.7e-07 60.5 48 54.2
Lj4A828G46 Lonicera japonica HOM05D006876 ORTHO05D008708 1.7e-07 60.5 72 44.4
MBI19_g10813_MAGBIO Magnolia biondii HOM05D006876 ORTHO05D008708 1.7e-07 60.5 52 55.8
arahy.Tifrunner.gnm1.ann1.SXUX32 Arachis hypogaea HOM05D006876 ORTHO05D008708 2.3e-07 60.1 72 47.2
arahy.Tifrunner.gnm1.ann1.U8TZLL Arachis hypogaea HOM05D006876 ORTHO05D008708 2.3e-07 60.1 72 47.2
AUR62020968 Chenopodium quinoa HOM05D006876 ORTHO05D008708 2.3e-07 60.1 60 51.7
Gohir.A13G086570 Gossypium hirsutum HOM05D006876 ORTHO05D008708 2.3e-07 60.1 54 53.7
PGR142G2444 Punica granatum HOM05D006876 ORTHO05D008708 2.3e-07 60.1 48 60.4
Sed0006068 Sechium edule HOM05D006876 ORTHO05D008708 2.3e-07 60.1 54 55.6
EL10Ac3g07376 Beta vulgaris HOM05D006876 ORTHO05D008708 3.0e-07 59.7 54 55.6
CANSAT78G2074 Cannabis sativa HOM05D006876 ORTHO05D008708 3.9e-07 59.3 53 49.1
Cfa019902 Carpinus fangiana HOM05D006876 ORTHO05D008708 3.9e-07 59.3 54 53.7
Haze_20349 Corylus avellana HOM05D006876 ORTHO05D008708 3.9e-07 59.3 69 44.9
Eucgr.K01704 Eucalyptus grandis HOM05D006876 ORTHO05D008708 5.1e-07 58.9 75 42.7
Sc19g0007790 Simmondsia chinensis HOM05D006876 ORTHO05D008708 6.6e-07 58.5 53 50.9
ECA233G0065 Erigeron canadensis HOM05D000444 ORTHO05D000489 8.7e-07 58.2 72 45.8
TAR623G1567 Trochodendron aralioides HOM05D006876 ORTHO05D008708 8.7e-07 58.2 54 55.6
Lsat_1_v5_gn_6_24200 Lactuca sativa HOM05D006876 ORTHO05D008708 1.1e-06 57.8 69 46.4
Manes.09G001600 Manihot esculenta HOM05D006876 ORTHO05D008708 1.1e-06 57.8 54 55.6
Phvul.001G101300 Phaseolus vulgaris HOM05D006876 ORTHO05D008708 1.1e-06 57.8 72 45.8
arahy.Tifrunner.gnm1.ann1.R6YTNA Arachis hypogaea HOM05D006876 ORTHO05D008708 1.5e-06 57.4 72 43.1
Hund24486 Selenicereus undatus HOM05D006876 ORTHO05D008708 1.5e-06 57.4 54 51.9
Ah.13g077470 Amaranthus hybridus HOM05D006876 ORTHO05D008708 3.3e-06 56.2 54 51.9
Ca_08331_v3 Cicer arietinum L. HOM05D006876 ORTHO05D008708 4.3e-06 55.8 53 56.6
Ciclev10012641m.g Citrus clementina HOM05D006876 ORTHO05D008708 4.3e-06 55.8 54 53.7
Psat3g083640 Pisum sativum HOM05D006876 ORTHO05D008708 7.3e-06 55.1 73 47.9


User provided reference genes

Program Settings