Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37526H Brassica oleracea HOM05D010499 ORTHO05D013671 0.0e+00 2798.1 1509 100.0
BcaC08g44783 Brassica carinata HOM05D010499 ORTHO05D013671 0.0e+00 2729.5 1510 98.2
C06p23550 Brassica napus HOM05D010499 ORTHO05D013671 0.0e+00 2692.1 1510 97.0
A07p22920 Brassica napus HOM05D010499 ORTHO05D013671 0.0e+00 2078.1 1560 78.4
BraA07t29958Z Brassica rapa HOM05D010499 ORTHO05D013671 0.0e+00 2068.1 1546 78.9
BcaB02g07653 Brassica carinata HOM05D010499 ORTHO05D013671 0.0e+00 2003.8 1581 74.6
Sp5g06040 Schrenkiella parvula HOM05D010499 ORTHO05D013671 0.0e+00 1741.5 1647 65.6
Thhalv10005743m.g Eutrema salsugineum HOM05D010499 ORTHO05D013671 0.0e+00 1474.1 1637 59.7
AL5G37740 Arabidopsis lyrata HOM05D010499 ORTHO05D013671 0.0e+00 1390.6 1596 57.1
AT3G56410 Arabidopsis thaliana HOM05D010499 ORTHO05D013671 0.0e+00 1368.2 1600 56.8
CARHR166540 Cardamine hirsuta HOM05D010499 ORTHO05D013671 0.0e+00 1150.2 1596 51.4
Carub.0005s2319 Capsella rubella HOM05D010499 ORTHO05D013671 7.4e-284 981.5 1611 45.1
Aa31LG10G11300 Aethionema arabicum HOM05D010499 ORTHO05D013671 1.0e-256 891.3 1631 45.1
THA.LOC104824598 Tarenaya hassleriana HOM05D010499 ORTHO05D013671 3.5e-68 265.0 611 37.3
A09p49360 Brassica napus HOM05D010499 ORTHO05D023864 6.4e-62 244.2 571 38.2
THA.LOC104814291 Tarenaya hassleriana HOM05D010499 ORTHO05D013671 2.1e-52 212.6 538 35.7
BolC8t50793H Brassica oleracea HOM05D010499 ORTHO05D023864 6.3e-33 147.9 353 36.8
C08p31720 Brassica napus HOM05D010499 ORTHO05D023864 7.2e-29 134.4 388 34.5
BcaC07g39955 Brassica carinata HOM05D010499 ORTHO05D023864 1.1e-26 127.1 259 39.4
CARHR208070 Cardamine hirsuta HOM05D010812 ORTHO05D004682 9.4e-13 80.9 476 23.7
Aa31LG3G3130 Aethionema arabicum HOM05D010499 ORTHO05D013671 2.1e-12 79.7 78 55.1
BraA09t40389Z Brassica rapa HOM05D010499 ORTHO05D023864 2.7e-12 79.3 77 53.2
CSS0024314 Camellia sinensis var. sinensis HOM05D005345 ORTHO05D004682 2.0e-10 73.2 114 43.0
Oeu006068.1 Olea europaea HOM05D005345 ORTHO05D004682 7.5e-10 71.2 74 51.4
Phvul.008G186500 Phaseolus vulgaris HOM05D005345 ORTHO05D004682 3.7e-09 68.9 137 35.0
CSS0033913 Camellia sinensis var. sinensis HOM05D005345 ORTHO05D004682 6.3e-09 68.2 144 33.3
Cpa.g.sc19.39 Carica papaya HOM05D005345 ORTHO05D004682 2.4e-08 66.2 186 30.1
THA.LOC104816507 Tarenaya hassleriana HOM05D010812 ORTHO05D004682 4.1e-08 65.5 210 29.5
CDE04G0305 Ceratophyllum demersum HOM05D025459 ORTHO05D004682 5.3e-08 65.1 82 40.2
Dinv34499 Davidia involucrata HOM05D005345 ORTHO05D004682 5.3e-08 65.1 117 34.2
Potri.019G061400 Populus trichocarpa HOM05D005345 ORTHO05D004682 5.3e-08 65.1 191 33.5
Glyma.06G141400 Glycine max HOM05D005345 ORTHO05D004682 7.0e-08 64.7 78 48.7
TPR.G33944 Trifolium pratense HOM05D005345 ORTHO05D004682 9.1e-08 64.3 141 31.9
Psat5g069400 Pisum sativum HOM05D005345 ORTHO05D004682 1.6e-07 63.5 100 40.0
Haze_17372 Corylus avellana HOM05D005345 ORTHO05D004682 2.0e-07 63.2 126 35.7
Oeu018746.1 Olea europaea HOM05D005345 ORTHO05D004682 2.0e-07 63.2 127 34.6
Oeu018747.2 Olea europaea HOM05D005345 ORTHO05D004682 2.0e-07 63.2 127 34.6
Lalb_Chr10g0102841 Lupinus albus HOM05D005345 ORTHO05D004682 2.7e-07 62.8 246 27.6
Nitab4.5_0005979g0010 Nicotiana tabacum HOM05D005345 ORTHO05D004682 2.7e-07 62.8 150 32.0
Gorai.011G206300 Gossypium raimondii HOM05D005345 ORTHO05D004682 3.5e-07 62.4 142 33.8
Psat2g061880 Pisum sativum HOM05D005345 ORTHO05D004682 3.5e-07 62.4 187 31.0
Sed0004419 Sechium edule HOM05D005345 ORTHO05D004682 3.5e-07 62.4 161 30.4
Aa31LG11G6050 Aethionema arabicum HOM05D010812 ORTHO05D004682 4.5e-07 62.0 340 25.9
Ca_23243_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 4.5e-07 62.0 188 30.9
Prupe.2G184400 Prunus persica HOM05D002045 ORTHO05D002014 4.5e-07 62.0 102 37.3
Glyma.02G219400 Glycine max HOM05D005345 ORTHO05D004682 5.9e-07 61.6 224 27.7
Sabra19G0075200 Salix brachista HOM05D005345 ORTHO05D004682 5.9e-07 61.6 176 32.4
PGSC0003DMG400022956 Solanum tuberosum HOM05D005345 ORTHO05D004682 5.9e-07 61.6 147 32.0
BcaB01g05942 Brassica carinata HOM05D010812 ORTHO05D004682 7.7e-07 61.2 235 29.4
C03p02570 Brassica napus HOM05D010812 ORTHO05D004682 7.7e-07 61.2 235 29.4
BolC3t12809H Brassica oleracea HOM05D010812 ORTHO05D004682 7.7e-07 61.2 235 29.4
Glyma.14G186800 Glycine max HOM05D005345 ORTHO05D004682 7.7e-07 61.2 140 31.4
Hund13436 Selenicereus undatus HOM05D005345 ORTHO05D004682 7.7e-07 61.2 95 34.7
MD01G1169800 Malus domestica HOM05D005345 ORTHO05D004682 1.0e-06 60.8 235 27.7
Sed0015893 Sechium edule HOM05D005345 ORTHO05D004682 1.0e-06 60.8 173 29.5
arahy.Tifrunner.gnm1.ann1.DZPX8Q Arachis hypogaea HOM05D005345 ORTHO05D004682 1.3e-06 60.5 108 37.0
arahy.Tifrunner.gnm1.ann1.E2ZVAX Arachis hypogaea HOM05D005345 ORTHO05D004682 1.3e-06 60.5 108 37.0
A03p02230 Brassica napus HOM05D010812 ORTHO05D004682 1.3e-06 60.5 223 29.6
BraA03t09587Z Brassica rapa HOM05D010812 ORTHO05D004682 1.3e-06 60.5 223 29.6
CsaV3_6G002400 Cucumis sativus L. HOM05D005345 ORTHO05D004682 1.3e-06 60.5 139 31.7
Sopen03g025560 Solanum pennellii HOM05D005345 ORTHO05D004682 1.3e-06 60.5 141 33.3
Aa31LG1G27730 Aethionema arabicum HOM05D002045 ORTHO05D002014 2.9e-06 59.3 393 22.1
CANSAT56G0683 Cannabis sativa HOM05D005345 ORTHO05D004682 2.9e-06 59.3 99 36.4
Cfa003827 Carpinus fangiana HOM05D002045 ORTHO05D002014 2.9e-06 59.3 102 36.3
AUR62030590 Chenopodium quinoa HOM05D005345 ORTHO05D004682 2.9e-06 59.3 129 34.9
Phvul.009G042600 Phaseolus vulgaris HOM05D005345 ORTHO05D004682 2.9e-06 59.3 104 40.4
TAR629G3516 Trochodendron aralioides HOM05D002045 ORTHO05D002014 2.9e-06 59.3 54 48.1
EL10Ac5g10466 Beta vulgaris HOM05D005345 ORTHO05D004682 3.8e-06 58.9 189 30.7
Rhsim09G0186300 Rhododendron simsii HOM05D005345 ORTHO05D004682 3.8e-06 58.9 119 37.0
GSVIVG01032655001 Vitis vinifera HOM05D005345 ORTHO05D004682 3.8e-06 58.9 123 35.8
LjContig00408g0007312 Lotus japonicus HOM05D005345 ORTHO05D004682 5.0e-06 58.5 169 28.4
TAR369G0882 Trochodendron aralioides HOM05D005345 ORTHO05D004682 5.0e-06 58.5 67 40.3
BcaC06g32228 Brassica carinata HOM05D010812 ORTHO05D004682 6.5e-06 58.2 209 28.7
Oeu064002.1 Olea europaea HOM05D005345 ORTHO05D004682 6.5e-06 58.2 199 28.6
PGR044G0353 Punica granatum HOM05D005345 ORTHO05D004682 6.5e-06 58.2 115 36.5
RcHm_v2.0_Chr1g0359001 Rosa chinensis HOM05D002045 ORTHO05D002014 6.5e-06 58.2 89 36.0
MSTRG.8382 Avicennia marina HOM05D005345 ORTHO05D004682 8.5e-06 57.8 81 40.7
Solyc01g095590.3 Solanum lycopersicum HOM05D002045 ORTHO05D002014 8.5e-06 57.8 55 49.1
Sopen01g039340 Solanum pennellii HOM05D002045 ORTHO05D002014 8.5e-06 57.8 55 49.1


User provided reference genes

Program Settings