Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37460H Brassica oleracea HOM05D005124 ORTHO05D005914 2.9e-99 365.2 178 100.0
Sp5g07110 Schrenkiella parvula HOM05D005124 ORTHO05D005914 3.2e-69 265.4 188 72.9
AL5G36500 Arabidopsis lyrata HOM05D005124 ORTHO05D005914 1.2e-68 263.5 182 73.1
A09p48250 Brassica napus HOM05D005124 ORTHO05D005914 1.2e-68 263.5 188 73.4
BraA09t40278Z Brassica rapa HOM05D005124 ORTHO05D005914 1.2e-68 263.5 188 73.4
BcaB01g00109 Brassica carinata HOM05D005124 ORTHO05D005914 2.7e-68 262.3 188 72.9
C08p30520 Brassica napus HOM05D005124 ORTHO05D005914 6.0e-68 261.2 188 72.3
BolC8t50671H Brassica oleracea HOM05D005124 ORTHO05D005914 6.0e-68 261.2 188 72.3
BcaC07g39849 Brassica carinata HOM05D005124 ORTHO05D005914 7.8e-68 260.8 188 72.3
Carub.0005s2200 Capsella rubella HOM05D005124 ORTHO05D005914 1.7e-67 259.6 188 71.8
Thhalv10010564m.g Eutrema salsugineum HOM05D005124 ORTHO05D005914 3.0e-67 258.8 182 72.0
AT3G55360 Arabidopsis thaliana HOM05D005124 ORTHO05D005914 1.5e-66 256.5 188 71.3
CARHR165370 Cardamine hirsuta HOM05D005124 ORTHO05D005914 7.3e-66 254.2 182 70.9
Atru.chr12.478 Acer truncatum HOM05D005124 ORTHO05D005914 4.4e-63 245.0 182 67.6
Atru.chr12.456 Acer truncatum HOM05D005124 ORTHO05D005914 9.9e-63 243.8 182 67.0
Gohir.A10G218500 Gossypium hirsutum HOM05D005124 ORTHO05D005914 2.9e-62 242.3 182 65.4
Lj1A937T93 Lonicera japonica HOM05D005124 ORTHO05D005914 4.9e-62 241.5 182 66.5
QL08p059856 Quercus lobata HOM05D005124 ORTHO05D005914 4.9e-62 241.5 180 66.1
Gohir.D10G228100 Gossypium hirsutum HOM05D005124 ORTHO05D005914 6.4e-62 241.1 182 64.8
Gorai.011G260500 Gossypium raimondii HOM05D005124 ORTHO05D005914 6.4e-62 241.1 182 64.8
COL.COLO4_15035 Corchorus olitorius HOM05D005124 ORTHO05D005914 8.4e-62 240.7 188 66.0
Aa31LG10G10370 Aethionema arabicum HOM05D005124 ORTHO05D005914 1.4e-61 240.0 192 65.1
QL07p048136 Quercus lobata HOM05D005124 ORTHO05D005914 1.4e-61 240.0 223 54.3
Potri.008G055400 Populus trichocarpa HOM05D005124 ORTHO05D005914 5.4e-61 238.0 182 64.3
MD01G1133600 Malus domestica HOM05D005124 ORTHO05D005914 7.1e-61 237.7 182 64.3
THA.LOC104810019 Tarenaya hassleriana HOM05D005124 ORTHO05D005914 7.1e-61 237.7 183 66.1
TWI63G0876 Tripterygium wilfordii HOM05D005124 ORTHO05D005914 9.3e-61 237.3 182 64.8
MELO3C021634.2 Cucumis melo HOM05D005124 ORTHO05D005914 1.6e-60 236.5 188 63.8
CsaV3_5G026640 Cucumis sativus L. HOM05D005124 ORTHO05D005914 1.6e-60 236.5 188 63.8
Duzib106G0291 Durio zibethinus HOM05D005124 ORTHO05D005914 1.6e-60 236.5 189 64.0
Nn2g10381 Nelumbo nucifera HOM05D005124 ORTHO05D005914 4.6e-60 235.0 188 63.3
Potri.010G204400 Populus trichocarpa HOM05D005124 ORTHO05D005914 4.6e-60 235.0 182 64.8
vmacro07168 Vaccinium macrocarpon HOM05D005124 ORTHO05D005914 4.6e-60 235.0 182 64.8
Duzib114G0065 Durio zibethinus HOM05D005124 ORTHO05D005914 6.0e-60 234.6 182 64.3
Hma1.2p1_0493F.1_g164810 Hydrangea macrophylla HOM05D005124 ORTHO05D005914 6.0e-60 234.6 182 64.3
Manes.07G115800 Manihot esculenta HOM05D005124 ORTHO05D005914 6.0e-60 234.6 182 62.6
Sed0008291 Sechium edule HOM05D005124 ORTHO05D005914 7.8e-60 234.2 182 62.6
HanXRQChr02g0037461 Helianthus annuus HOM05D005124 ORTHO05D005914 1.0e-59 233.8 190 64.7
arahy.Tifrunner.gnm1.ann1.5S3M3D Arachis hypogaea HOM05D005124 ORTHO05D005914 1.3e-59 233.4 187 64.2
Phvul.008G208700 Phaseolus vulgaris HOM05D005124 ORTHO05D005914 1.3e-59 233.4 181 65.2
PGSC0003DMG400023428 Solanum tuberosum HOM05D005124 ORTHO05D005914 1.3e-59 233.4 188 62.8
LjContig00564g0003972 Lotus japonicus HOM05D005124 ORTHO05D005914 1.7e-59 233.0 187 64.7
Rhsim09G0165600 Rhododendron simsii HOM05D005124 ORTHO05D005914 1.7e-59 233.0 182 63.7
AUR62014578 Chenopodium quinoa HOM05D005124 ORTHO05D005914 2.3e-59 232.6 188 62.8
Haze_17065 Corylus avellana HOM05D005124 ORTHO05D005914 2.3e-59 232.6 182 63.2
Gohir.D04G062800 Gossypium hirsutum HOM05D005124 ORTHO05D005914 2.3e-59 232.6 182 63.7
Cfa001478 Carpinus fangiana HOM05D005124 ORTHO05D005914 3.0e-59 232.3 182 63.2
AUR62039383 Chenopodium quinoa HOM05D005124 ORTHO05D005914 3.0e-59 232.3 188 61.7
Sabra10G0158000 Salix brachista HOM05D005124 ORTHO05D005914 3.0e-59 232.3 182 63.7
Solyc05g054490.3 Solanum lycopersicum HOM05D005124 ORTHO05D005914 3.0e-59 232.3 191 62.3
Sopen05g032970 Solanum pennellii HOM05D005124 ORTHO05D005914 3.0e-59 232.3 191 62.3
arahy.Tifrunner.gnm1.ann1.4ZRU7U Arachis hypogaea HOM05D005124 ORTHO05D005914 3.9e-59 231.9 187 64.7
CAN.G1013.24 Capsicum annuum HOM05D005124 ORTHO05D005914 3.9e-59 231.9 188 62.2
PGR142G4329 Punica granatum HOM05D005124 ORTHO05D005914 3.9e-59 231.9 182 62.1
Hund16091 Selenicereus undatus HOM05D005124 ORTHO05D005914 3.9e-59 231.9 182 63.7
TAR636G2208 Trochodendron aralioides HOM05D005124 ORTHO05D005914 3.9e-59 231.9 182 63.7
Gohir.A05G349500 Gossypium hirsutum HOM05D005124 ORTHO05D005914 5.1e-59 231.5 182 63.2
TWI38G0280 Tripterygium wilfordii HOM05D005124 ORTHO05D005914 5.1e-59 231.5 182 63.2
Dinv03051 Davidia involucrata HOM05D005124 ORTHO05D005914 6.6e-59 231.1 191 62.8
ClCG09G019780 Citrullus lanatus HOM05D005124 ORTHO05D005914 8.7e-59 230.7 182 62.6
HanXRQChr14g0457911 Helianthus annuus HOM05D005124 ORTHO05D005914 8.7e-59 230.7 182 64.8
Atru.chr8.1964 Acer truncatum HOM05D005124 ORTHO05D005914 1.1e-58 230.3 182 65.4
CANSAT35G1058 Cannabis sativa HOM05D005124 ORTHO05D005914 1.1e-58 230.3 188 61.7
Glyma.14G043500 Glycine max HOM05D005124 ORTHO05D005914 1.1e-58 230.3 187 63.6
Sed0011488 Sechium edule HOM05D005124 ORTHO05D005914 1.1e-58 230.3 182 61.0
Eucgr.G02931 Eucalyptus grandis HOM05D005124 ORTHO05D005914 1.5e-58 229.9 182 61.0
Gorai.012G070200 Gossypium raimondii HOM05D005124 ORTHO05D005914 1.9e-58 229.6 182 63.2
TPR.G11759 Trifolium pratense HOM05D005124 ORTHO05D005914 1.9e-58 229.6 188 64.4
CSS0018512 Camellia sinensis var. sinensis HOM05D005124 ORTHO05D005914 3.3e-58 228.8 182 62.1
CiPaw.02G183600 Carya illinoinensis HOM05D005124 ORTHO05D005914 3.3e-58 228.8 181 61.3
MBI05_g30240_MAGBIO Magnolia biondii HOM05D005124 ORTHO05D005914 3.3e-58 228.8 189 62.4
Nitab4.5_0001992g0020 Nicotiana tabacum HOM05D005124 ORTHO05D005914 3.3e-58 228.8 191 62.3
Actinidia07729 Actinidia chinensis HOM05D005124 ORTHO05D005914 4.3e-58 228.4 182 62.6
EL10Ac2g04754 Beta vulgaris HOM05D005124 ORTHO05D005914 4.3e-58 228.4 188 61.2
Manes.10G030900 Manihot esculenta HOM05D005124 ORTHO05D005914 5.6e-58 228.0 182 61.5
Medtr5g087590 Medicago truncatula HOM05D005124 ORTHO05D005914 5.6e-58 228.0 188 64.4
Nitab4.5_0006489g0030 Nicotiana tabacum HOM05D005124 ORTHO05D005914 5.6e-58 228.0 191 61.8
Peaxi162Scf00015g01122 Petunia axillaris HOM05D005124 ORTHO05D005914 5.6e-58 228.0 182 62.1
Ciclev10032183m.g Citrus clementina HOM05D005124 ORTHO05D005914 7.3e-58 227.6 182 61.0
PSO384G3927 Papaver somniferum HOM05D005124 ORTHO05D005914 9.6e-58 227.3 182 62.1
VMungo0647G2337 Vigna mungo HOM05D005124 ORTHO05D005914 9.6e-58 227.3 187 63.6
Glyma.02G273300 Glycine max HOM05D005124 ORTHO05D005914 1.3e-57 226.9 181 63.5
CiPaw.01G287000 Carya illinoinensis HOM05D005124 ORTHO05D005914 1.6e-57 226.5 181 61.9
Zm00001eb335900 Zea mays HOM05D005124 ORTHO05D005914 1.6e-57 226.5 188 62.2
Aqoxy4G02912 Aquilegia oxysepala HOM05D005124 ORTHO05D005914 2.1e-57 226.1 188 60.1
PSO151G0123 Papaver somniferum HOM05D005124 ORTHO05D005914 4.8e-57 224.9 188 62.2
Sc10g0001530 Simmondsia chinensis HOM05D005124 ORTHO05D005914 4.8e-57 224.9 182 62.1
Cc02_g07900 Coffea canephora HOM05D005124 ORTHO05D005914 6.2e-57 224.6 182 62.1
Oeu064390.1 Olea europaea HOM05D005124 ORTHO05D005914 6.2e-57 224.6 182 61.0
PSO339G1516 Papaver somniferum HOM05D005124 ORTHO05D005914 6.2e-57 224.6 188 61.2
PGR044G0197 Punica granatum HOM05D005124 ORTHO05D005914 8.1e-57 224.2 190 62.6
vmacro10239 Vaccinium macrocarpon HOM05D005124 ORTHO05D005914 8.1e-57 224.2 182 62.1
Ah.10g037270 Amaranthus hybridus HOM05D005124 ORTHO05D005914 1.1e-56 223.8 186 60.2
SGA_v2.0_scaffold62G21508 Striga asiatica HOM05D005124 ORTHO05D005914 1.1e-56 223.8 181 63.0
THA.LOC104806959 Tarenaya hassleriana HOM05D005124 ORTHO05D005914 1.8e-56 223.0 197 58.9
Ca_06145_v3 Cicer arietinum L. HOM05D005124 ORTHO05D005914 3.1e-56 222.2 187 62.0
PSO339G2840 Papaver somniferum HOM05D005124 ORTHO05D005914 3.1e-56 222.2 182 61.5
FvH4_7g22400 Fragaria vesca HOM05D005124 ORTHO05D005914 6.9e-56 221.1 188 60.1
TPR.G11707 Trifolium pratense HOM05D005124 ORTHO05D005914 1.2e-55 220.3 188 62.8
HanXRQChr08g0220691 Helianthus annuus HOM05D005124 ORTHO05D005914 1.5e-55 219.9 182 59.9
RcHm_v2.0_Chr1g0367031 Rosa chinensis HOM05D005124 ORTHO05D005914 2.0e-55 219.5 188 60.6
Hund13757 Selenicereus undatus HOM05D005124 ORTHO05D005914 2.0e-55 219.5 188 61.2
Migut.F01507 Erythranthe guttata HOM05D005124 ORTHO05D005914 3.4e-55 218.8 184 60.9
Lalb_Chr17g0347451 Lupinus albus HOM05D005124 ORTHO05D005914 4.5e-55 218.4 189 61.4
Lsat_1_v5_gn_2_119361 Lactuca sativa HOM05D005124 ORTHO05D005914 5.8e-55 218.0 185 61.1
ATR0559G034 Amborella trichopoda HOM05D005124 ORTHO05D005914 9.9e-55 217.2 189 58.2
Sc11g0007960 Simmondsia chinensis HOM05D005124 ORTHO05D005914 1.3e-54 216.9 187 58.8
Lalb_Chr10g0105851 Lupinus albus HOM05D005124 ORTHO05D005914 1.7e-54 216.5 188 61.7
ECA238G0837 Erigeron canadensis HOM05D005124 ORTHO05D005914 1.9e-53 213.0 182 59.3
FAN06G1830 Fragaria x ananassa HOM05D000173 ORTHO05D005914 4.2e-53 211.8 201 56.2
FAN10G1013 Fragaria x ananassa HOM05D005124 ORTHO05D005914 5.4e-53 211.5 201 55.7
FAN01G0844 Fragaria x ananassa HOM05D000173 ORTHO05D005914 2.1e-52 209.5 201 55.2
FAN01G2689 Fragaria x ananassa HOM05D000173 ORTHO05D005914 2.1e-52 209.5 201 55.7
FAN03G2181 Fragaria x ananassa HOM05D000173 ORTHO05D005914 2.1e-52 209.5 201 55.2
MD07G1197900 Malus domestica HOM05D005124 ORTHO05D005914 2.1e-52 209.5 224 51.3
Thecc.10G042800 Theobroma cacao HOM05D005124 ORTHO05D005914 4.6e-52 208.4 182 59.3
unitig_736.g22316 Utricularia gibba HOM05D005124 ORTHO05D005914 1.0e-51 207.2 182 57.1
Sabra08G0040000 Salix brachista HOM05D005124 ORTHO05D005914 1.8e-51 206.5 182 58.2
SEGI_04878 Sequoiadendron giganteum HOM05D005124 ORTHO05D005914 1.8e-51 206.5 188 55.3
Prupe.2G234700 Prunus persica HOM05D005124 ORTHO05D005914 2.5e-50 202.6 182 58.2
DCAR_011693 Daucus carota HOM05D005124 ORTHO05D005914 2.8e-49 199.1 187 56.7
TAR623G1530 Trochodendron aralioides HOM05D005124 ORTHO05D005914 6.2e-49 198.0 175 60.6
ClCG04G008230 Citrullus lanatus HOM05D005124 ORTHO05D005914 8.1e-49 197.6 182 54.9
Os01g0150000 Oryza sativa ssp. japonica HOM05D005124 ORTHO05D005914 2.4e-48 196.1 110 83.6
Lj8A85T48 Lonicera japonica HOM05D005124 ORTHO05D005914 1.2e-47 193.7 194 57.2
Psat0s921g0200 Pisum sativum HOM05D005124 ORTHO05D005914 3.4e-47 192.2 169 62.1
MSTRG.8244 Avicennia marina HOM05D005124 ORTHO05D005914 2.7e-44 182.6 182 52.2
CDE02G1562 Ceratophyllum demersum HOM05D005124 ORTHO05D005914 4.6e-44 181.8 186 51.1
CDE09G1206 Ceratophyllum demersum HOM05D005124 ORTHO05D005914 2.3e-43 179.5 188 51.1
Mapoly0001s0158 Marchantia polymorpha HOM05D005124 ORTHO05D005914 2.8e-41 172.6 181 47.5
FAN06G1643 Fragaria x ananassa HOM05D000173 ORTHO05D005914 1.2e-39 167.2 201 49.8
GSVIVG01016549001 Vitis vinifera HOM05D005124 ORTHO05D005914 4.2e-37 158.7 182 46.7
Pp3c16_5330 Physcomitrium patens HOM05D005124 ORTHO05D005914 2.7e-36 156.0 178 43.3
SMO111G0037 Selaginella moellendorffii HOM05D005124 ORTHO05D005914 3.0e-35 152.5 188 47.3
CBR_g107 Chara braunii HOM05D005124 ORTHO05D005914 1.5e-34 150.2 189 47.1
BraA07t29257Z Brassica rapa HOM05D005124 ORTHO05D005914 5.7e-34 148.3 88 81.8
Oeu048254.1 Olea europaea HOM05D005124 ORTHO05D005914 5.9e-31 138.3 110 61.8
Pp3c16_5340 Physcomitrium patens HOM05D005124 ORTHO05D005914 5.9e-31 138.3 185 41.6
AagrBONN_evm.TU.Sc2ySwM_344.2572 Anthoceros agrestis HOM05D005124 ORTHO05D005914 5.0e-30 135.2 104 66.3
Cre14.g615050 Chlamydomonas reinhardtii HOM05D005124 ORTHO05D005914 7.9e-28 127.9 194 39.7
MCO15G355 Micromonas commoda HOM05D005124 ORTHO05D005914 4.5e-23 112.1 193 38.9
PRCOL_00004526 Prasinoderma coloniale HOM05D005124 ORTHO05D005914 2.5e-21 106.3 102 49.0
Cpa.g.c31433 Carica papaya HOM05D005124 ORTHO05D005914 1.5e-18 97.1 113 51.3
Pp3c27_2450 Physcomitrium patens HOM05D005124 ORTHO05D005914 1.5e-18 97.1 158 39.9
Haze_26509 Corylus avellana HOM05D005124 ORTHO05D005914 5.7e-18 95.1 100 46.0
unitig_899.g15066 Utricularia gibba HOM05D005124 ORTHO05D005914 4.7e-12 75.5 36 91.7
Cc00_g31070 Coffea canephora HOM05D005124 ORTHO05D005914 3.5e-07 59.3 53 58.5


User provided reference genes

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