Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44692 Brassica carinata HOM05D007603 ORTHO05D009604 7.3e-104 380.6 191 100.0
C06p22280 Brassica napus HOM05D007603 ORTHO05D009604 7.3e-104 380.6 191 100.0
BolC6t37414H Brassica oleracea HOM05D007603 ORTHO05D009604 7.3e-104 380.6 191 100.0
A07p22220 Brassica napus HOM05D007603 ORTHO05D009604 1.1e-99 366.7 191 97.9
BraA07t29901Z Brassica rapa HOM05D007603 ORTHO05D009604 4.6e-98 361.3 191 96.3
BcaB02g07727 Brassica carinata HOM05D007603 ORTHO05D009604 8.9e-78 293.9 200 81.0
Sp5g07770 Schrenkiella parvula HOM05D007603 ORTHO05D009604 9.0e-70 267.3 217 72.8
Thhalv10010720m.g Eutrema salsugineum HOM05D007603 ORTHO05D009604 3.4e-61 238.8 218 66.1
Carub.0005s2128 Capsella rubella HOM05D007603 ORTHO05D009604 4.5e-61 238.4 215 67.0
BcaC07g39795 Brassica carinata HOM05D007603 ORTHO05D009604 2.2e-60 236.1 207 69.1
A09p47630 Brassica napus HOM05D007603 ORTHO05D009604 2.2e-60 236.1 207 69.1
BcaB01g00169 Brassica carinata HOM05D007603 ORTHO05D009604 8.7e-57 224.2 207 67.1
C08p29830 Brassica napus HOM05D007603 ORTHO05D009604 1.1e-56 223.8 199 68.3
Aa31sc35G40 Aethionema arabicum HOM05D007603 ORTHO05D009604 1.6e-55 219.9 219 62.6
CARHR164600 Cardamine hirsuta HOM05D007603 ORTHO05D009604 2.8e-55 219.2 221 61.1
AL5G35760 Arabidopsis lyrata HOM05D007603 ORTHO05D009604 1.3e-52 210.3 217 60.8
BolC8t50594H Brassica oleracea HOM05D007603 ORTHO05D009604 2.7e-50 202.6 199 64.8
AT3G54680 Arabidopsis thaliana HOM05D007603 ORTHO05D009604 5.1e-49 198.4 216 59.3
THA.LOC104825256 Tarenaya hassleriana HOM05D007603 ORTHO05D009604 1.2e-34 150.6 207 51.2
THA.LOC104823514 Tarenaya hassleriana HOM05D007603 ORTHO05D009604 4.4e-32 142.1 236 47.9
BraA09t40219Z Brassica rapa HOM05D007603 ORTHO05D009604 3.1e-30 136.0 155 56.1
Manes.13G141000 Manihot esculenta HOM05D007603 ORTHO05D009604 9.1e-30 134.4 243 42.0
Thecc.02G187900 Theobroma cacao HOM05D007603 ORTHO05D009604 1.0e-28 131.0 237 42.6
Potri.013G072200 Populus trichocarpa HOM05D007603 ORTHO05D009604 2.9e-28 129.4 242 41.3
Ciclev10017455m.g Citrus clementina HOM05D007603 ORTHO05D009604 2.5e-27 126.3 235 40.9
Sabra13G0062200 Salix brachista HOM05D007603 ORTHO05D009604 6.1e-26 121.7 242 40.5
Potri.013G120700 Populus trichocarpa HOM05D007603 ORTHO05D009604 1.0e-25 120.9 243 39.9
Atru.chr6.2855 Acer truncatum HOM05D007603 ORTHO05D009604 2.0e-24 116.7 234 38.9
Sabra13G0102000 Salix brachista HOM05D007603 ORTHO05D009604 2.6e-24 116.3 241 39.0
ClCG02G002280 Citrullus lanatus HOM05D007603 ORTHO05D009604 9.7e-24 114.4 234 40.6
arahy.Tifrunner.gnm1.ann1.M59RYT Arachis hypogaea HOM05D007603 ORTHO05D009604 1.3e-23 114.0 221 43.0
Gohir.A03G153900 Gossypium hirsutum HOM05D007603 ORTHO05D009604 1.3e-23 114.0 230 43.0
Sed0026242 Sechium edule HOM05D007603 ORTHO05D009604 1.3e-23 114.0 213 41.8
CiPaw.03G182900 Carya illinoinensis HOM05D007603 ORTHO05D009604 1.7e-23 113.6 223 42.2
MELO3C018861.2 Cucumis melo HOM05D007603 ORTHO05D009604 1.7e-23 113.6 232 39.7
arahy.Tifrunner.gnm1.ann1.76DKB4 Arachis hypogaea HOM05D007603 ORTHO05D009604 2.2e-23 113.2 221 43.0
Gohir.D02G176900 Gossypium hirsutum HOM05D007603 ORTHO05D009604 6.3e-23 111.7 231 42.0
TWI23G0636 Tripterygium wilfordii HOM05D007603 ORTHO05D009604 1.4e-22 110.5 231 42.4
Lalb_Chr14g0367241 Lupinus albus HOM05D007603 ORTHO05D009604 1.2e-21 107.5 224 39.7
SalBow7G0820 Salvia bowleyana HOM05D007603 ORTHO05D009604 7.7e-21 104.8 211 42.2
CSS0037684 Camellia sinensis var. sinensis HOM05D007603 ORTHO05D009604 1.7e-20 103.6 224 38.4
QL08p040785 Quercus lobata HOM05D007603 ORTHO05D009604 3.8e-20 102.4 226 37.6
PGR042G1843 Punica granatum HOM05D007603 ORTHO05D009604 6.5e-20 101.7 236 38.6
Prupe.3G128600 Prunus persica HOM05D007603 ORTHO05D009604 1.9e-19 100.1 228 37.3
Haze_13265 Corylus avellana HOM05D007603 ORTHO05D009604 5.5e-19 98.6 228 36.8
Dinv06842 Davidia involucrata HOM05D007603 ORTHO05D009604 2.1e-18 96.7 226 38.9
FAN02G2478 Fragaria x ananassa HOM05D007603 ORTHO05D009604 2.1e-18 96.7 205 40.5
vmacro12353 Vaccinium macrocarpon HOM05D007603 ORTHO05D009604 2.7e-18 96.3 214 41.6
Lj3g0007744 Lotus japonicus HOM05D007603 ORTHO05D009604 8.0e-18 94.7 221 37.6
Actinidia10989 Actinidia chinensis HOM05D007603 ORTHO05D009604 1.8e-17 93.6 189 40.7
Glyma.12G207700 Glycine max HOM05D007603 ORTHO05D009604 4.0e-17 92.4 217 40.1
Oeu036085.1 Olea europaea HOM05D007603 ORTHO05D009604 6.7e-17 91.7 247 38.1
TWI14G0603 Tripterygium wilfordii HOM05D007603 ORTHO05D009604 2.6e-16 89.7 226 38.1
Sed0002279 Sechium edule HOM05D007603 ORTHO05D009604 4.4e-16 89.0 222 36.0
Oeu016901.1 Olea europaea HOM05D007603 ORTHO05D009604 7.5e-16 88.2 243 39.5
Dinv39835 Davidia involucrata HOM05D007603 ORTHO05D009604 1.3e-15 87.4 180 43.3
FAN14G3046 Fragaria x ananassa HOM05D007603 ORTHO05D016291 1.7e-15 87.0 196 39.3
Hma1.2p1_0002F.1_g002370 Hydrangea macrophylla HOM05D007603 ORTHO05D009604 6.3e-15 85.1 226 36.7
Psat5g274200 Pisum sativum HOM05D007603 ORTHO05D009604 6.3e-15 85.1 213 36.6
PGSC0003DMG400009384 Solanum tuberosum HOM05D007603 ORTHO05D009604 1.1e-14 84.3 239 34.3
MSTRG.14321 Avicennia marina HOM05D007603 ORTHO05D009604 1.4e-14 84.0 231 35.9
PSO541G0270 Papaver somniferum HOM05D007603 ORTHO05D009604 4.1e-14 82.4 236 36.9
Solyc07g150145.1 Solanum lycopersicum HOM05D007603 ORTHO05D009604 4.1e-14 82.4 240 35.4
Aqoxy1G02256 Aquilegia oxysepala HOM05D007603 ORTHO05D009604 5.3e-14 82.0 242 36.8
Medtr2g090770 Medicago truncatula HOM05D007603 ORTHO05D009604 1.2e-13 80.9 220 36.4
TPR.G6485 Trifolium pratense HOM05D007603 ORTHO05D009604 1.2e-13 80.9 208 35.6
Cpa.g.sc50.10 Carica papaya HOM05D007603 ORTHO05D009604 2.7e-13 79.7 259 33.2
VMungo1080G0021 Vigna mungo HOM05D007603 ORTHO05D009604 5.9e-13 78.6 220 34.5
Phvul.005G099400 Phaseolus vulgaris HOM05D007603 ORTHO05D009604 7.7e-13 78.2 223 35.0
DCAR_013048 Daucus carota HOM05D007603 ORTHO05D009604 5.0e-12 75.5 231 35.9
CsaV3_7G003160 Cucumis sativus L. HOM05D007603 ORTHO05D009604 1.5e-11 73.9 174 36.2
CAN.G1543.2 Capsicum annuum HOM05D007603 ORTHO05D009604 1.9e-11 73.6 170 37.6
HanXRQChr08g0231781 Helianthus annuus HOM05D007603 ORTHO05D009604 2.5e-11 73.2 200 36.5
Nitab4.5_0002629g0010 Nicotiana tabacum HOM05D007603 ORTHO05D009604 2.5e-11 73.2 233 33.9
Lsat_1_v5_gn_8_137160 Lactuca sativa HOM05D007603 ORTHO05D009604 4.2e-11 72.4 216 37.5
Glyma.13G293400 Glycine max HOM05D007603 ORTHO05D009604 1.2e-10 70.9 203 36.0
CDE10G0532 Ceratophyllum demersum HOM05D007603 ORTHO05D009604 1.6e-10 70.5 216 35.6
Cc05_g07840 Coffea canephora HOM05D007603 ORTHO05D009604 1.6e-10 70.5 168 39.3
Nitab4.5_0006973g0020 Nicotiana tabacum HOM05D007603 ORTHO05D009604 2.3e-09 66.6 180 36.7
CDE10G1214 Ceratophyllum demersum HOM05D007603 ORTHO05D009604 3.0e-09 66.2 216 34.3
TAR626G1090 Trochodendron aralioides HOM05D001501 ORTHO05D001329 5.2e-09 65.5 192 34.4
Sopen07g027470 Solanum pennellii HOM05D007603 ORTHO05D009604 1.2e-08 64.3 132 40.9
PSO675G7067 Papaver somniferum HOM05D007603 ORTHO05D009604 1.5e-08 63.9 237 34.2
Actinidia11119 Actinidia chinensis HOM05D007603 ORTHO05D009604 2.6e-08 63.2 216 34.3
Rhsim06G0135700 Rhododendron simsii HOM05D007603 ORTHO05D009604 2.2e-07 60.1 95 43.2
Nn1g04268 Nelumbo nucifera HOM05D007603 ORTHO05D009604 2.8e-07 59.7 249 31.7
TAR624G0387 Trochodendron aralioides HOM05D007603 ORTHO05D009604 3.7e-07 59.3 150 36.0
Hund01003 Selenicereus undatus HOM05D007603 ORTHO05D009604 8.3e-07 58.2 243 31.3
MBI06_g00805_MAGBIO Magnolia biondii HOM05D007603 ORTHO05D009604 1.1e-06 57.8 189 36.5
unitig_749.g13962 Utricularia gibba HOM05D007603 ORTHO05D009604 1.1e-06 57.8 225 32.4


User provided reference genes

Program Settings