Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37368H Brassica oleracea HOM05D001128 ORTHO05D000721 3.3e-157 558.5 321 100.0
BcaC08g44658 Brassica carinata HOM05D001128 ORTHO05D000721 1.1e-149 533.5 326 96.6
C06p21800 Brassica napus HOM05D001128 ORTHO05D000721 1.1e-149 533.5 326 96.6
BraA07t29871Z Brassica rapa HOM05D001128 ORTHO05D000721 3.2e-112 409.1 332 72.6
A07p21900 Brassica napus HOM05D001128 ORTHO05D000721 7.4e-109 397.9 332 71.4
BcaB02g07755 Brassica carinata HOM05D001128 ORTHO05D000721 1.4e-104 383.6 326 67.8
Sp5g08400 Schrenkiella parvula HOM05D001128 ORTHO05D000721 6.7e-86 321.6 366 56.8
A09p46920 Brassica napus HOM05D001128 ORTHO05D000721 6.3e-68 261.9 361 53.5
BcaC07g39751 Brassica carinata HOM05D001128 ORTHO05D000721 1.2e-66 257.7 366 50.3
C08p29250 Brassica napus HOM05D001128 ORTHO05D000721 1.2e-66 257.7 366 50.3
BcaB01g00225 Brassica carinata HOM05D001128 ORTHO05D000721 4.5e-66 255.8 360 52.8
BolC8t50527H Brassica oleracea HOM05D001128 ORTHO05D000721 5.9e-66 255.4 369 50.4
BraA09t40159Z Brassica rapa HOM05D001128 ORTHO05D000721 2.9e-65 253.1 362 52.2
Thhalv10010478m.g Eutrema salsugineum HOM05D001128 ORTHO05D000721 2.0e-61 240.4 373 48.0
BcaB02g08495 Brassica carinata HOM05D001128 ORTHO05D000721 5.4e-59 232.3 348 48.9
AL5G35000 Arabidopsis lyrata HOM05D001128 ORTHO05D000721 5.9e-58 228.8 359 46.0
BolC4t25433H Brassica oleracea HOM05D001128 ORTHO05D000721 1.3e-57 227.6 347 46.4
BcaC02g09109 Brassica carinata HOM05D001128 ORTHO05D000721 2.9e-57 226.5 349 46.4
C04p38580 Brassica napus HOM05D001128 ORTHO05D000721 3.3e-56 223.0 349 45.8
A04p05780 Brassica napus HOM05D001128 ORTHO05D000721 2.2e-52 210.3 351 44.7
CARHR163900 Cardamine hirsuta HOM05D001128 ORTHO05D000721 2.9e-52 209.9 379 42.0
BraA04t16274Z Brassica rapa HOM05D001128 ORTHO05D000721 6.4e-52 208.8 358 44.1
Carub.0005s2059 Capsella rubella HOM05D001128 ORTHO05D000721 6.4e-52 208.8 377 45.4
AT3G54000 Arabidopsis thaliana HOM05D001128 ORTHO05D000721 7.0e-51 205.3 354 47.2
Aa31LG10G8860 Aethionema arabicum HOM05D001128 ORTHO05D000721 1.6e-42 177.6 335 43.9
THA.LOC104823397 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 3.6e-39 166.4 340 40.3
THA.LOC104806538 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 9.2e-35 151.8 341 41.1
THA.LOC104805648 Tarenaya hassleriana HOM05D001128 ORTHO05D000721 2.4e-27 127.1 316 36.7
Manes.09G099100 Manihot esculenta HOM05D001128 ORTHO05D000721 7.1e-27 125.6 348 34.8
Thecc.05G027900 Theobroma cacao HOM05D001128 ORTHO05D000721 7.1e-27 125.6 340 35.6
Gorai.006G178800 Gossypium raimondii HOM05D001128 ORTHO05D000721 3.0e-25 120.2 338 33.7
Gohir.D09G157200 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.5e-24 117.9 406 31.0
Cpa.g.sc56.66 Carica papaya HOM05D001128 ORTHO05D000721 3.3e-24 116.7 340 33.8
Gohir.A09G161600 Gossypium hirsutum HOM05D001128 ORTHO05D000721 9.6e-24 115.2 344 32.3
Duzib128G0075 Durio zibethinus HOM05D001128 ORTHO05D000721 2.8e-23 113.6 338 33.7
COL.COLO4_14683 Corchorus olitorius HOM05D001128 ORTHO05D000721 4.8e-23 112.8 349 33.5
BcaB02g07756 Brassica carinata HOM05D001128 ORTHO05D000721 4.0e-22 109.8 111 61.3
TAR636G2726 Trochodendron aralioides HOM05D001128 ORTHO05D000721 2.6e-21 107.1 337 30.9
Ciclev10011799m.g Citrus clementina HOM05D001128 ORTHO05D000721 7.6e-21 105.5 365 34.2
Gohir.D04G126000 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.3e-20 104.8 344 32.0
CANSAT35G1304 Cannabis sativa HOM05D001128 ORTHO05D000721 1.7e-20 104.4 349 32.4
Gohir.A04G086100 Gossypium hirsutum HOM05D001128 ORTHO05D000721 3.8e-20 103.2 345 32.2
Gorai.012G109000 Gossypium raimondii HOM05D001128 ORTHO05D000721 6.4e-20 102.4 344 31.7
Duzib093G0147 Durio zibethinus HOM05D001128 ORTHO05D000721 5.4e-19 99.4 348 32.2
TWI77G0372 Tripterygium wilfordii HOM05D001128 ORTHO05D000721 9.3e-19 98.6 328 32.0
TWI74G1371 Tripterygium wilfordii HOM05D001128 ORTHO05D000721 2.7e-18 97.1 339 31.9
PSO339G4622 Papaver somniferum HOM05D001128 ORTHO05D000721 4.6e-18 96.3 365 30.7
TAR623G0478 Trochodendron aralioides HOM05D001128 ORTHO05D000721 4.6e-18 96.3 354 33.3
CiPaw.10G150200 Carya illinoinensis HOM05D001128 ORTHO05D000721 6.0e-18 95.9 349 30.1
Rhsim05G0200600 Rhododendron simsii HOM05D001128 ORTHO05D000721 2.3e-17 94.0 355 31.3
PSO384G2375 Papaver somniferum HOM05D001128 ORTHO05D000721 3.0e-17 93.6 364 32.1
TAR633G0212 Trochodendron aralioides HOM05D001128 ORTHO05D000721 3.9e-17 93.2 339 33.9
Phvul.008G113400 Phaseolus vulgaris HOM05D001128 ORTHO05D000721 1.1e-16 91.7 334 31.7
Hma1.2p1_0671F.1_g200660 Hydrangea macrophylla HOM05D001128 ORTHO05D000721 1.9e-16 90.9 350 28.9
Actinidia13814 Actinidia chinensis HOM05D001128 ORTHO05D000721 5.6e-16 89.4 348 31.9
Ca_07581_v3 Cicer arietinum L. HOM05D001128 ORTHO05D000721 5.6e-16 89.4 348 28.7
Nn2g11296 Nelumbo nucifera HOM05D001128 ORTHO05D000721 5.6e-16 89.4 359 30.4
VMungo1383G1773 Vigna mungo HOM05D001128 ORTHO05D000721 9.6e-16 88.6 336 31.0
Cfa017294 Carpinus fangiana HOM05D001128 ORTHO05D000721 1.3e-15 88.2 361 30.5
CsaV3_4G025740 Cucumis sativus L. HOM05D001128 ORTHO05D000721 1.3e-15 88.2 333 29.4
CSS0004370 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 1.6e-15 87.8 327 33.3
Potri.006G093000 Populus trichocarpa HOM05D001128 ORTHO05D000721 2.1e-15 87.4 365 29.6
Duzib106G0325 Durio zibethinus HOM05D001128 ORTHO05D000721 2.8e-15 87.0 331 29.9
Gorai.007G377500 Gossypium raimondii HOM05D001128 ORTHO05D000721 2.8e-15 87.0 302 31.8
Glyma.07G141000 Glycine max HOM05D001128 ORTHO05D000721 3.6e-15 86.7 338 31.4
MBI14_g02856_MAGBIO Magnolia biondii HOM05D001128 ORTHO05D000721 3.6e-15 86.7 342 29.8
Glyma.18G191000 Glycine max HOM05D001128 ORTHO05D000721 4.8e-15 86.3 341 30.8
Gohir.D11G347100 Gossypium hirsutum HOM05D001128 ORTHO05D000721 4.8e-15 86.3 302 31.8
CsaV3_3G034430 Cucumis sativus L. HOM05D001128 ORTHO05D000721 6.2e-15 85.9 317 31.9
ClCG04G007510 Citrullus lanatus HOM05D001128 ORTHO05D000721 1.4e-14 84.7 336 30.1
ClCG10G021600 Citrullus lanatus HOM05D001128 ORTHO05D000721 1.4e-14 84.7 298 30.2
MELO3C003199.2 Cucumis melo HOM05D001128 ORTHO05D000721 2.4e-14 84.0 332 29.2
DCAR_028803 Daucus carota HOM05D001128 ORTHO05D000721 3.1e-14 83.6 308 31.2
Psat0s1845g0240 Pisum sativum HOM05D001128 ORTHO05D000721 3.1e-14 83.6 351 28.5
vmacro20201 Vaccinium macrocarpon HOM05D001128 ORTHO05D000721 3.1e-14 83.6 324 32.4
SalBow1G2079 Salvia bowleyana HOM05D001128 ORTHO05D000721 6.9e-14 82.4 381 28.1
Haze_20899 Corylus avellana HOM05D001128 ORTHO05D000721 1.5e-13 81.3 370 29.5
Nitab4.5_0000119g0370 Nicotiana tabacum HOM05D001128 ORTHO05D000721 1.5e-13 81.3 331 30.2
MELO3C009213.2 Cucumis melo HOM05D001128 ORTHO05D000721 2.0e-13 80.9 314 30.3
QL07p027947 Quercus lobata HOM05D001128 ORTHO05D000721 2.0e-13 80.9 354 29.7
RcHm_v2.0_Chr3g0464501 Rosa chinensis HOM05D001128 ORTHO05D000721 2.6e-13 80.5 416 28.4
Actinidia29161 Actinidia chinensis HOM05D001128 ORTHO05D000721 5.8e-13 79.3 347 30.5
Hma1.2p1_1521F.1_g288670 Hydrangea macrophylla HOM05D001128 ORTHO05D000721 7.6e-13 79.0 356 30.9
MD12G1155400 Malus domestica HOM05D001128 ORTHO05D000721 7.6e-13 79.0 343 29.7
Potri.016G105000 Populus trichocarpa HOM05D001128 ORTHO05D000721 1.3e-12 78.2 360 30.3
Atru.chr8.2106 Acer truncatum HOM05D001128 ORTHO05D000721 1.7e-12 77.8 375 28.5
MD04G1140200 Malus domestica HOM05D001128 ORTHO05D000721 1.7e-12 77.8 337 29.4
Lsat_1_v5_gn_8_80861 Lactuca sativa HOM05D001128 ORTHO05D000721 2.2e-12 77.4 312 29.8
Nn2g13535 Nelumbo nucifera HOM05D001128 ORTHO05D000721 2.9e-12 77.0 334 27.8
Oeu013161.1 Olea europaea HOM05D001128 ORTHO05D000721 3.8e-12 76.6 381 26.2
PGSC0003DMG400019191 Solanum tuberosum HOM05D001128 ORTHO05D000721 4.9e-12 76.3 305 31.1
Solyc09g011690.4 Solanum lycopersicum HOM05D001128 ORTHO05D000721 6.4e-12 75.9 340 30.0
GSVIVG01034054001 Vitis vinifera HOM05D001128 ORTHO05D000721 6.4e-12 75.9 305 28.9
Aqoxy1G00786 Aquilegia oxysepala HOM05D001128 ORTHO05D000721 8.4e-12 75.5 410 26.1
Gohir.D10G238700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 8.4e-12 75.5 343 30.3
Gorai.011G274600 Gossypium raimondii HOM05D001128 ORTHO05D000721 8.4e-12 75.5 344 32.0
CSS0030928 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 1.9e-11 74.3 337 31.2
Sed0025256 Sechium edule HOM05D001128 ORTHO05D000721 1.9e-11 74.3 313 28.8
Lj3C959G13 Lonicera japonica HOM05D001128 ORTHO05D000721 3.2e-11 73.6 325 28.0
Nitab4.5_0000008g0230 Nicotiana tabacum HOM05D001128 ORTHO05D000721 3.2e-11 73.6 322 30.7
Nitab4.5_0003264g0030 Nicotiana tabacum HOM05D001128 ORTHO05D000721 3.2e-11 73.6 322 30.7
MBI05_g02674_MAGBIO Magnolia biondii HOM05D001128 ORTHO05D000721 4.2e-11 73.2 310 30.0
MSTRG.5621 Avicennia marina HOM05D001128 ORTHO05D000721 7.1e-11 72.4 332 27.4
ClCG10G021590 Citrullus lanatus HOM05D001128 ORTHO05D000721 7.1e-11 72.4 307 29.3
FAN14G3619 Fragaria x ananassa HOM05D001128 ORTHO05D000721 7.1e-11 72.4 409 27.6
Prupe.6G265300 Prunus persica HOM05D001128 ORTHO05D000721 7.1e-11 72.4 304 29.9
vmacro07011 Vaccinium macrocarpon HOM05D001128 ORTHO05D000721 9.3e-11 72.0 329 27.7
FvH4_6g12650 Fragaria vesca HOM05D001128 ORTHO05D000721 1.2e-10 71.6 407 27.8
Oeu018335.1 Olea europaea HOM05D001128 ORTHO05D000721 1.2e-10 71.6 387 27.4
Sopen09g006510 Solanum pennellii HOM05D001128 ORTHO05D000721 1.2e-10 71.6 337 29.4
Gohir.A10G226400 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.6e-10 71.2 344 32.6
Gohir.A11G328200 Gossypium hirsutum HOM05D001128 ORTHO05D000721 2.1e-10 70.9 310 32.9
Duzib128G2050 Durio zibethinus HOM05D001128 ORTHO05D000721 2.7e-10 70.5 354 28.5
Oeu001830.1 Olea europaea HOM05D001128 ORTHO05D000721 2.7e-10 70.5 327 26.0
Gorai.012G073700 Gossypium raimondii HOM05D001128 ORTHO05D000721 3.5e-10 70.1 319 27.6
Sabra16G0104100 Salix brachista HOM05D001128 ORTHO05D000721 3.5e-10 70.1 369 28.2
PGSC0003DMG400011730 Solanum tuberosum HOM05D001128 ORTHO05D000721 3.5e-10 70.1 337 28.5
Dinv35538 Davidia involucrata HOM05D001128 ORTHO05D000721 4.6e-10 69.7 234 34.6
FAN02G4298 Fragaria x ananassa HOM05D001128 ORTHO05D000721 4.6e-10 69.7 412 25.5
Gohir.A06G165300 Gossypium hirsutum HOM05D001128 ORTHO05D000721 6.0e-10 69.3 302 28.8
Sed0002927 Sechium edule HOM05D001128 ORTHO05D000721 7.9e-10 68.9 290 28.3
CSS0013156 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 1.0e-09 68.6 337 32.0
MSTRG.19049 Avicennia marina HOM05D001128 ORTHO05D000721 1.3e-09 68.2 320 26.2
FAN05G2922 Fragaria x ananassa HOM05D001128 ORTHO05D000721 1.8e-09 67.8 414 25.6
Oeu009915.1 Olea europaea HOM05D001128 ORTHO05D000721 1.8e-09 67.8 324 27.8
CSS0047983 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 2.3e-09 67.4 342 28.4
Lsat_1_v5_gn_9_31700 Lactuca sativa HOM05D001128 ORTHO05D000721 2.3e-09 67.4 357 29.4
FAN09G1692 Fragaria x ananassa HOM05D001128 ORTHO05D000721 3.0e-09 67.0 414 25.4
Gohir.A05G346700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 3.9e-09 66.6 321 28.0
Migut.J00260 Erythranthe guttata HOM05D001128 ORTHO05D000721 5.1e-09 66.2 376 24.7
Gohir.D06G170700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 5.1e-09 66.2 297 28.3
HanXRQChr06g0176291 Helianthus annuus HOM05D001128 ORTHO05D000721 8.7e-09 65.5 312 31.1
ClCG00G003060 Citrullus lanatus HOM05D001128 ORTHO05D000721 1.1e-08 65.1 313 27.8
Gohir.D04G065500 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.1e-08 65.1 320 27.5
PGR004G1424 Punica granatum HOM05D001128 ORTHO05D000721 1.1e-08 65.1 310 28.1
Hma1.2p1_0026F.1_g016650 Hydrangea macrophylla HOM05D001128 ORTHO05D000721 1.9e-08 64.3 434 27.0
Migut.L01977 Erythranthe guttata HOM05D001128 ORTHO05D000721 2.5e-08 63.9 354 26.3
Lalb_Chr19g0124971 Lupinus albus HOM05D001128 ORTHO05D000721 2.5e-08 63.9 400 30.5
LjContig00047_ERROPOS266959g0024685 Lotus japonicus HOM05D001128 ORTHO05D000721 3.3e-08 63.5 313 30.4
Dinv16282 Davidia involucrata HOM05D001128 ORTHO05D000721 4.3e-08 63.2 362 28.5
Peaxi162Scf00132g00911 Petunia axillaris HOM05D001128 ORTHO05D000721 4.3e-08 63.2 318 26.7
CiPaw.09G202700 Carya illinoinensis HOM05D001128 ORTHO05D000721 9.6e-08 62.0 216 31.5
Dinv34448 Davidia involucrata HOM05D001128 ORTHO05D000721 9.6e-08 62.0 329 28.3
COL.COLO4_25581 Corchorus olitorius HOM05D001128 ORTHO05D000721 1.6e-07 61.2 367 26.2
Prupe.2G243200 Prunus persica HOM05D001128 ORTHO05D000721 1.6e-07 61.2 351 27.1
Thecc.10G030500 Theobroma cacao HOM05D001128 ORTHO05D000721 1.6e-07 61.2 355 26.5
C04p39540 Brassica napus HOM05D022378 ORTHO05D024169 2.1e-07 60.8 52 61.5
BolC4t21720H Brassica oleracea HOM05D022378 ORTHO05D024169 2.1e-07 60.8 52 61.5
BolC4t25519H Brassica oleracea HOM05D022378 ORTHO05D024169 2.1e-07 60.8 52 61.5
ECA236G1029 Erigeron canadensis HOM05D001128 ORTHO05D000131 2.1e-07 60.8 283 34.3
BcaC02g09005 Brassica carinata HOM05D022378 ORTHO05D024169 2.8e-07 60.5 88 43.2
BolC4t21741H Brassica oleracea HOM05D022378 ORTHO05D024169 2.8e-07 60.5 52 61.5
Actinidia02898 Actinidia chinensis HOM05D001128 ORTHO05D000721 3.7e-07 60.1 367 28.6
Nitab4.5_0002823g0030 Nicotiana tabacum HOM05D001128 ORTHO05D000721 6.2e-07 59.3 322 28.3
HPP92_018175 Vanilla planifolia HOM05D001128 ORTHO05D000721 6.2e-07 59.3 353 27.2
Eucgr.B02733 Eucalyptus grandis HOM05D001128 ORTHO05D000721 8.1e-07 58.9 326 27.9
HPP92_015345 Vanilla planifolia HOM05D001128 ORTHO05D000721 1.1e-06 58.5 290 27.6
arahy.Tifrunner.gnm1.ann1.KBQI3L Arachis hypogaea HOM05D001128 ORTHO05D000721 1.4e-06 58.2 329 26.7
HPP92_026966 Vanilla planifolia HOM05D001128 ORTHO05D000721 1.4e-06 58.2 290 27.6
CDE03G0277 Ceratophyllum demersum HOM05D001128 ORTHO05D000721 1.8e-06 57.8 289 28.7
RcHm_v2.0_Chr1g0368901 Rosa chinensis HOM05D001128 ORTHO05D000721 1.8e-06 57.8 342 28.1
MSTRG.10240 Avicennia marina HOM05D001128 ORTHO05D000721 2.4e-06 57.4 316 25.9
Dinv37107 Davidia involucrata HOM05D001128 ORTHO05D000721 2.4e-06 57.4 136 35.3
Actinidia14078 Actinidia chinensis HOM05D001128 ORTHO05D000721 3.1e-06 57.0 314 26.8
CDE04G0001 Ceratophyllum demersum HOM05D001128 ORTHO05D000721 3.1e-06 57.0 293 29.4
Medtr0027s0090 Medicago truncatula HOM05D001128 ORTHO05D000721 3.1e-06 57.0 319 27.3
Sed0012315 Sechium edule HOM05D001128 ORTHO05D000721 3.1e-06 57.0 306 28.1
MD15G1149300 Malus domestica HOM05D001128 ORTHO05D000721 4.0e-06 56.6 172 33.1
Gorai.010G199700 Gossypium raimondii HOM05D001128 ORTHO05D000721 5.3e-06 56.2 294 27.6
Ca_05146_v3 Cicer arietinum L. HOM05D001128 ORTHO05D000721 9.0e-06 55.5 380 23.7


User provided reference genes

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