Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37349H Brassica oleracea HOM05D008508 ORTHO05D003325 2.7e-69 265.8 197 100.0
C06p21610 Brassica napus HOM05D008508 ORTHO05D003325 3.6e-58 228.8 198 91.4
BcaC08g44645 Brassica carinata HOM05D008508 ORTHO05D003325 2.4e-57 226.1 198 90.9
BraA07t29860Z Brassica rapa HOM05D008508 ORTHO05D003325 3.3e-51 205.7 202 73.8
A07p21780 Brassica napus HOM05D008508 ORTHO05D003325 1.3e-50 203.8 200 75.5
BcaB02g07768 Brassica carinata HOM05D008508 ORTHO05D003325 4.2e-46 188.7 202 73.8
Sp5g08700 Schrenkiella parvula HOM05D008508 ORTHO05D003325 3.3e-43 179.1 212 66.0
Thhalv10010719m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 3.1e-41 172.6 215 64.7
BraA09t40129Z Brassica rapa HOM05D008508 ORTHO05D003325 1.2e-40 170.6 206 66.5
Carub.0005s2025 Capsella rubella HOM05D008508 ORTHO05D003325 3.4e-40 169.1 208 60.1
AL5G34640 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 4.5e-40 168.7 214 53.7
BolC8t50501H Brassica oleracea HOM05D008508 ORTHO05D003325 1.3e-39 167.2 212 65.6
AT3G53670 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 1.9e-38 163.3 211 60.7
A09p46660 Brassica napus HOM05D008508 ORTHO05D003325 4.2e-38 162.2 208 64.4
BcaC07g39726 Brassica carinata HOM05D008508 ORTHO05D003325 1.2e-37 160.6 215 61.4
C08p28980 Brassica napus HOM05D008508 ORTHO05D003325 1.2e-37 160.6 215 61.4
BcaB01g00256 Brassica carinata HOM05D008508 ORTHO05D003325 5.1e-36 155.2 203 61.6
BcaB01g03773 Brassica carinata HOM05D008508 ORTHO05D003325 9.4e-30 134.4 205 44.4
Sp4g19810 Schrenkiella parvula HOM05D008508 ORTHO05D003325 1.0e-28 131.0 205 57.1
BcaC01g05613 Brassica carinata HOM05D008508 ORTHO05D003325 1.4e-28 130.6 199 49.7
C03p24300 Brassica napus HOM05D008508 ORTHO05D003325 1.4e-28 130.6 199 49.7
BolC3t14826H Brassica oleracea HOM05D008508 ORTHO05D003325 1.4e-28 130.6 199 49.7
Aa31LG10G9300 Aethionema arabicum HOM05D008508 ORTHO05D003325 8.8e-28 127.9 210 42.9
A03p20680 Brassica napus HOM05D008508 ORTHO05D003325 4.3e-27 125.6 199 51.3
BraA03t11309Z Brassica rapa HOM05D008508 ORTHO05D003325 4.3e-27 125.6 199 51.3
A05p08470 Brassica napus HOM05D008508 ORTHO05D003325 5.7e-27 125.2 152 64.5
AL4G33940 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 1.3e-26 124.0 202 53.5
AT2G37480 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 6.3e-26 121.7 204 50.5
BraA05t19816Z Brassica rapa HOM05D008508 ORTHO05D003325 8.2e-26 121.3 152 63.2
Carub.0004s1941 Capsella rubella HOM05D008508 ORTHO05D003325 8.2e-26 121.3 203 52.7
BcaB02g09283 Brassica carinata HOM05D008508 ORTHO05D003325 2.4e-25 119.8 164 59.8
BcaC02g11856 Brassica carinata HOM05D008508 ORTHO05D003325 3.4e-24 115.9 152 65.8
Thhalv10017918m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 7.7e-24 114.8 202 50.5
C04p10560 Brassica napus HOM05D008508 ORTHO05D003325 1.0e-23 114.4 152 65.1
BolC4t22647H Brassica oleracea HOM05D008508 ORTHO05D003325 1.0e-23 114.4 154 64.9
BolC4t28099H Brassica oleracea HOM05D008508 ORTHO05D003325 1.0e-23 114.4 197 48.7
AL4G33980 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 1.7e-23 113.6 204 48.5
Aa31LG5G22930 Aethionema arabicum HOM05D008508 ORTHO05D003325 3.8e-23 112.5 206 46.1
BraA04t18340Z Brassica rapa HOM05D008508 ORTHO05D003325 6.5e-23 111.7 197 51.3
C04p65950 Brassica napus HOM05D008508 ORTHO05D003325 8.5e-23 111.3 197 48.2
BcaB06g28998 Brassica carinata HOM05D008508 ORTHO05D003325 1.4e-22 110.5 155 44.5
THA.LOC104805432 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 5.5e-22 108.6 162 44.4
A04p28630 Brassica napus HOM05D008508 ORTHO05D003325 7.9e-21 104.8 197 50.3
CARHR132120 Cardamine hirsuta HOM05D008508 ORTHO05D003325 8.8e-20 101.3 112 51.8
CARHR163580 Cardamine hirsuta HOM05D008508 ORTHO05D003325 8.2e-18 94.7 186 38.2
BcaB01g00255 Brassica carinata HOM05D008508 ORTHO05D003325 1.0e-15 87.8 91 79.1
THA.LOC104824529 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 1.6e-13 80.5 99 49.5
THA.LOC104806576 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 3.9e-12 75.9 87 50.6
Atru.chr8.1956 Acer truncatum HOM05D004206 ORTHO05D003325 3.7e-10 69.3 64 56.2
AL5G37360 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 3.7e-10 69.3 41 80.5
Dinv35636 Davidia involucrata HOM05D004206 ORTHO05D003325 1.4e-09 67.4 93 44.1
Ciclev10012502m.g Citrus clementina HOM05D004206 ORTHO05D003325 9.1e-09 64.7 87 47.1
Glyma.03G172400 Glycine max HOM05D004206 ORTHO05D003325 9.1e-09 64.7 82 43.9
DCAR_009254 Daucus carota HOM05D004206 ORTHO05D003325 1.2e-08 64.3 79 44.3
Lalb_Chr20g0113171 Lupinus albus HOM05D004206 ORTHO05D003325 1.2e-08 64.3 83 48.2
Phvul.007G158100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 1.2e-08 64.3 88 47.7
Duzib093G1984 Durio zibethinus HOM05D004206 ORTHO05D003325 1.6e-08 63.9 55 58.2
PGSC0003DMG400008929 Solanum tuberosum HOM05D004206 ORTHO05D003325 1.6e-08 63.9 79 48.1
Hma1.2p1_1707F.1_g298550 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 2.0e-08 63.5 84 42.9
GSVIVG01025530001 Vitis vinifera HOM05D004206 ORTHO05D003325 2.0e-08 63.5 80 45.0
Nitab4.5_0009149g0020 Nicotiana tabacum HOM05D004206 ORTHO05D003325 3.5e-08 62.8 60 53.3
FvH4_6g14310 Fragaria vesca HOM05D004206 ORTHO05D003325 4.5e-08 62.4 60 51.7
MD12G1138400 Malus domestica HOM05D004206 ORTHO05D003325 4.5e-08 62.4 58 56.9
Thecc.05G044400 Theobroma cacao HOM05D004206 ORTHO05D003325 4.5e-08 62.4 63 55.6
TWI77G0356 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 4.5e-08 62.4 98 40.8
Actinidia05297 Actinidia chinensis HOM05D004206 ORTHO05D003325 7.7e-08 61.6 79 41.8
Hma1.2p1_0350F.1_g132380 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 7.7e-08 61.6 55 50.9
Hma1.2p1_1065F.1_g253750 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 7.7e-08 61.6 55 50.9
Phvul.001G170100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 7.7e-08 61.6 88 39.8
TWI74G0821 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 7.7e-08 61.6 95 42.1
Duzib106G1929 Durio zibethinus HOM05D004206 ORTHO05D003325 1.0e-07 61.2 49 61.2
FAN02G2861 Fragaria x ananassa HOM05D004206 ORTHO05D003325 1.0e-07 61.2 58 53.4
FAN05G4716 Fragaria x ananassa HOM05D004206 ORTHO05D003325 1.0e-07 61.2 58 53.4
FAN09G1551 Fragaria x ananassa HOM05D004206 ORTHO05D003325 1.0e-07 61.2 58 53.4
Peaxi162Scf00039g01222 Petunia axillaris HOM05D004206 ORTHO05D003325 1.0e-07 61.2 89 43.8
Gohir.D09G153700 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.3e-07 60.8 77 45.5
TWI53G0070 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 1.3e-07 60.8 66 48.5
Lalb_Chr25g0289551 Lupinus albus HOM05D004206 ORTHO05D003325 1.7e-07 60.5 80 45.0
MD04G1121200 Malus domestica HOM05D004206 ORTHO05D003325 1.7e-07 60.5 58 55.2
Rhsim05G0188200 Rhododendron simsii HOM05D004206 ORTHO05D003325 1.7e-07 60.5 89 41.6
RcHm_v2.0_Chr3g0467301 Rosa chinensis HOM05D004206 ORTHO05D003325 1.7e-07 60.5 58 53.4
CSS0043919 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 2.2e-07 60.1 53 56.6
CAN.G97.20 Capsicum annuum HOM05D004206 ORTHO05D003325 2.2e-07 60.1 79 45.6
Glyma.19G173300 Glycine max HOM05D004206 ORTHO05D003325 2.2e-07 60.1 49 59.2
Solyc09g010410.3 Solanum lycopersicum HOM05D004206 ORTHO05D003325 2.2e-07 60.1 79 45.6
Sopen09g005150 Solanum pennellii HOM05D004206 ORTHO05D003325 2.2e-07 60.1 79 45.6
Actinidia13126 Actinidia chinensis HOM05D004206 ORTHO05D003325 2.9e-07 59.7 93 41.9
CiPaw.09G188800 Carya illinoinensis HOM05D004206 ORTHO05D003325 2.9e-07 59.7 67 46.3
AUR62037393 Chenopodium quinoa HOM05D004206 ORTHO05D003325 2.9e-07 59.7 55 54.5
Nitab4.5_0002077g0110 Nicotiana tabacum HOM05D004206 ORTHO05D003325 2.9e-07 59.7 82 43.9
PGR004G1990 Punica granatum HOM05D004206 ORTHO05D003325 2.9e-07 59.7 101 36.6
VMungo1383G1995 Vigna mungo HOM05D004206 ORTHO05D003325 3.8e-07 59.3 49 57.1
EL10Ac9g20956 Beta vulgaris HOM05D004206 ORTHO05D003325 5.0e-07 58.9 51 56.9
Oeu049209.1 Olea europaea HOM05D004206 ORTHO05D003325 5.0e-07 58.9 87 43.7
Hund00876 Selenicereus undatus HOM05D004206 ORTHO05D003325 5.0e-07 58.9 61 55.7
Sc01g0003990 Simmondsia chinensis HOM05D004206 ORTHO05D003325 5.0e-07 58.9 61 54.1
Glyma.10G044400 Glycine max HOM05D004206 ORTHO05D003325 6.5e-07 58.5 91 40.7
Gohir.A09G158300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 6.5e-07 58.5 48 60.4
Peaxi162Scf00407g00067 Petunia axillaris HOM05D004206 ORTHO05D003325 6.5e-07 58.5 58 51.7
VMungo0720G2610 Vigna mungo HOM05D004206 ORTHO05D003325 6.5e-07 58.5 85 44.7
Ca_09615_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 8.5e-07 58.2 97 39.2
Gorai.006G175200 Gossypium raimondii HOM05D004206 ORTHO05D003325 8.5e-07 58.2 65 50.8
CANSAT35G0311 Cannabis sativa HOM05D004206 ORTHO05D003325 1.1e-06 57.8 53 56.6
Medtr7g099950 Medicago truncatula HOM05D004206 ORTHO05D003325 1.1e-06 57.8 46 58.7
Psat6g067720 Pisum sativum HOM05D004206 ORTHO05D003325 1.1e-06 57.8 81 43.2
MSTRG.19101 Avicennia marina HOM05D004206 ORTHO05D003325 1.5e-06 57.4 51 54.9
Manes.08G076700 Manihot esculenta HOM05D004206 ORTHO05D003325 1.5e-06 57.4 64 51.6
Oeu026485.2 Olea europaea HOM05D004206 ORTHO05D003325 1.5e-06 57.4 86 39.5
Sc20g0004600 Simmondsia chinensis HOM05D004206 ORTHO05D003325 1.5e-06 57.4 69 46.4
Lsat_1_v5_gn_1_55680 Lactuca sativa HOM05D004206 ORTHO05D003325 1.9e-06 57.0 70 48.6
Psat3g048840 Pisum sativum HOM05D004206 ORTHO05D003325 1.9e-06 57.0 43 60.5
arahy.Tifrunner.gnm1.ann1.72TEPU Arachis hypogaea HOM05D004206 ORTHO05D003325 2.5e-06 56.6 98 37.8
Cfa017429 Carpinus fangiana HOM05D004206 ORTHO05D003325 2.5e-06 56.6 75 42.7
COL.COLO4_14855 Corchorus olitorius HOM05D004206 ORTHO05D003325 2.5e-06 56.6 61 52.5
Psat2g133080 Pisum sativum HOM05D000159 ORTHO05D000148 2.5e-06 56.6 43 60.5
TPR.G25989 Trifolium pratense HOM05D004206 ORTHO05D003325 2.5e-06 56.6 48 60.4
CSS0031426 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D000289 3.2e-06 56.2 64 45.3
Cpa.g.sc11.170 Carica papaya HOM05D004206 ORTHO05D003325 3.2e-06 56.2 58 50.0
Cc06_g02970 Coffea canephora HOM05D004206 ORTHO05D003325 3.2e-06 56.2 94 37.2
Lj1g0028211 Lotus japonicus HOM05D004206 ORTHO05D003325 3.2e-06 56.2 64 45.3
SalBow3G3817 Salvia bowleyana HOM05D004206 ORTHO05D003325 3.2e-06 56.2 82 42.7
AUR62041741 Chenopodium quinoa HOM05D004206 ORTHO05D003325 4.2e-06 55.8 46 58.7
Migut.J00362 Erythranthe guttata HOM05D004206 ORTHO05D003325 5.5e-06 55.5 55 52.7
Nitab4.5_0000349g0070 Nicotiana tabacum HOM05D004206 ORTHO05D003325 5.5e-06 55.5 93 37.6
SGA_v2.0_scaffold126G33821 Striga asiatica HOM05D004206 ORTHO05D003325 5.5e-06 55.5 97 40.2
TPR.G21456 Trifolium pratense HOM05D004206 ORTHO05D003325 5.5e-06 55.5 46 56.5
Ca_08787_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 7.2e-06 55.1 45 60.0
Glyma.13G132002 Glycine max HOM05D004206 ORTHO05D003325 7.2e-06 55.1 54 55.6
Lalb_Chr06g0171041 Lupinus albus HOM05D004206 ORTHO05D003325 7.2e-06 55.1 61 47.5
Oeu036176.1 Olea europaea HOM05D004206 ORTHO05D003325 7.2e-06 55.1 72 43.1
Potri.006G082100 Populus trichocarpa HOM05D004206 ORTHO05D003325 7.2e-06 55.1 73 43.8
Prupe.6G250300 Prunus persica HOM05D004206 ORTHO05D003325 7.2e-06 55.1 70 45.7
Gohir.A04G080300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 9.4e-06 54.7 60 45.0
Lj5g0023302 Lotus japonicus HOM05D004206 ORTHO05D003325 9.4e-06 54.7 50 56.0
Manes.09G086700 Manihot esculenta HOM05D004206 ORTHO05D003325 9.4e-06 54.7 89 38.2
Nitab4.5_0000527g0130 Nicotiana tabacum HOM05D004206 ORTHO05D003325 9.4e-06 54.7 93 37.6
Rhsim13G0085900 Rhododendron simsii HOM05D004206 ORTHO05D003325 9.4e-06 54.7 56 46.4


User provided reference genes

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