Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 2.9e-210 734.9 366 100.0
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 1.4e-207 726.1 366 98.6
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 1.4e-207 726.1 366 98.6
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 3.7e-205 718.0 367 97.8
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 9.1e-204 713.4 368 97.6
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 8.8e-199 696.8 368 95.1
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 2.8e-189 665.2 366 90.2
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 1.6e-187 659.4 368 88.9
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 2.2e-186 655.6 366 88.8
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 3.8e-186 654.8 366 89.6
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 1.5e-185 652.9 367 88.8
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 9.4e-185 650.2 367 88.8
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 8.0e-184 647.1 366 89.1
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 5.2e-183 644.4 368 89.1
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 4.8e-181 637.9 366 87.2
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 6.3e-181 637.5 368 87.0
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 1.1e-172 610.1 366 82.5
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 2.0e-171 605.9 365 82.2
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 3.5e-171 605.1 366 82.0
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 8.0e-168 594.0 367 81.7
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 1.0e-167 593.6 367 81.7
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 9.8e-166 587.0 369 79.7
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 3.7e-165 585.1 369 79.4
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 2.5e-161 572.4 338 86.7
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 1.4e-159 566.6 366 76.8
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 1.1e-156 557.0 366 76.0
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 2.5e-153 545.8 366 74.9
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 9.5e-153 543.9 367 73.6
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 2.3e-151 539.3 368 73.4
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 4.0e-151 538.5 363 74.1
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 8.9e-151 537.3 309 82.2
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 2.0e-150 536.2 367 73.3
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 7.5e-150 534.3 312 81.1
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 9.8e-150 533.9 367 72.2
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 9.8e-150 533.9 366 73.8
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 1.3e-149 533.5 366 73.2
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 1.3e-149 533.5 331 77.9
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 1.7e-149 533.1 367 73.3
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 1.7e-149 533.1 363 73.0
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 1.7e-149 533.1 372 72.3
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 2.2e-149 532.7 357 73.9
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 3.7e-149 531.9 365 73.4
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 8.3e-149 530.8 323 79.9
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 1.9e-148 529.6 365 72.1
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 2.4e-148 529.3 365 72.1
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 2.4e-148 529.3 359 73.8
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 3.2e-148 528.9 370 71.4
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 2.1e-147 526.2 363 71.9
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 2.1e-147 526.2 359 73.0
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 2.1e-147 526.2 366 72.4
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 2.1e-147 526.2 364 73.6
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 2.7e-147 525.8 318 78.6
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 3.5e-147 525.4 364 73.1
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.3e-146 523.5 367 71.4
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 1.3e-146 523.5 372 72.6
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 1.7e-146 523.1 368 72.0
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 3.0e-146 522.3 312 79.8
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 3.9e-146 521.9 381 69.8
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 1.1e-145 520.4 366 75.7
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 1.1e-145 520.4 313 78.0
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 1.5e-145 520.0 306 80.4
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 1.9e-145 519.6 370 70.5
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 2.5e-145 519.2 369 71.5
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 2.5e-145 519.2 365 71.5
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 4.3e-145 518.5 366 71.6
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 4.3e-145 518.5 312 79.2
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 7.3e-145 517.7 363 71.3
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 7.3e-145 517.7 359 72.7
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 1.6e-144 516.5 315 79.0
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 1.6e-144 516.5 338 80.8
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 2.8e-144 515.8 366 69.4
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 6.2e-144 514.6 364 71.2
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 8.1e-144 514.2 327 75.2
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 3.1e-143 512.3 359 69.9
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 3.1e-143 512.3 335 73.7
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 4.0e-143 511.9 350 71.4
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 5.2e-143 511.5 373 68.4
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 8.9e-143 510.8 323 75.9
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.2e-142 510.4 368 70.1
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 2.6e-142 509.2 349 73.1
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 4.4e-142 508.4 311 77.5
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 1.3e-141 506.9 356 70.8
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 1.7e-141 506.5 366 69.7
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 2.9e-141 505.8 363 69.1
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 2.9e-141 505.8 318 76.4
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 3.7e-141 505.4 372 66.9
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 1.1e-140 503.8 368 69.3
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 3.2e-140 502.3 356 69.4
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 7.1e-140 501.1 394 65.0
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.6e-139 500.0 366 69.1
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 6.0e-139 498.0 297 78.1
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 6.0e-139 498.0 373 67.0
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 7.8e-139 497.7 361 68.7
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 3.0e-138 495.7 355 68.2
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 3.0e-138 495.7 338 71.3
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 3.9e-138 495.4 367 65.9
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 6.6e-138 494.6 366 69.4
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 8.6e-138 494.2 373 66.8
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 1.9e-137 493.0 387 64.3
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 1.9e-137 493.0 366 67.8
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 2.5e-137 492.7 370 66.8
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 2.8e-136 489.2 320 72.2
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 1.1e-135 487.3 365 69.6
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.1e-135 487.3 351 68.4
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 4.0e-135 485.3 362 67.7
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 3.4e-134 482.3 352 68.8
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 1.3e-133 480.3 319 73.0
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 5.1e-130 468.4 483 53.2
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 2.5e-129 466.1 390 63.8
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 3.3e-129 465.7 330 71.8
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.3e-128 463.8 383 63.2
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 1.2e-126 457.2 277 79.4
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 1.3e-125 453.8 289 72.7
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 6.0e-123 444.9 332 68.7
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 3.1e-119 432.6 289 69.9
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 7.6e-118 427.9 338 71.3
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 2.4e-116 422.9 278 73.7
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 1.6e-115 420.2 286 70.3
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 2.8e-112 409.5 291 67.4
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 3.2e-108 396.0 242 76.4
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 5.5e-108 395.2 289 66.1
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 1.4e-100 370.5 267 68.2
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 1.9e-100 370.2 285 62.5
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 6.1e-99 365.2 284 65.8
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 5.7e-97 358.6 294 59.2
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 1.1e-95 354.4 256 70.7
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 3.9e-90 335.9 259 66.0
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 2.2e-85 320.1 290 56.6
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 1.6e-78 297.4 168 82.1
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 1.4e-71 274.2 160 80.6
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 5.4e-63 245.7 222 56.3
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 4.7e-59 232.6 127 83.5
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 3.7e-56 223.0 148 74.3
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 4.5e-54 216.1 127 78.0
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 7.5e-49 198.7 148 68.2
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 4.1e-47 193.0 148 67.6
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 3.5e-46 189.9 332 40.1
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.6e-43 179.9 100 79.0
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 8.9e-42 175.3 148 61.5
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.6e-38 164.5 105 70.5
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 4.3e-36 156.4 108 66.7
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 3.3e-28 130.2 72 83.3
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 4.6e-22 109.8 64 79.7
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 6.6e-21 105.9 67 74.6
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 6.6e-21 105.9 67 74.6
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 4.7e-19 99.8 57 77.2
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 1.2e-17 95.1 113 50.4
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 1.7e-16 91.3 46 87.0
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 3.8e-16 90.1 46 87.0
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 6.4e-16 89.4 45 88.9
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 9.6e-12 75.5 39 79.5
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 1.3e-11 75.1 35 88.6
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 2.6e-09 67.4 37 86.5
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 4.2e-07 60.1 119 29.4
BcaB03g16084 Brassica carinata HOM05D004804 ORTHO05D001170 7.1e-07 59.3 51 60.8


User provided reference genes

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