Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p20730 Brassica napus HOM05D005449 ORTHO05D027985 3.1e-41 171.4 89 100.0
BolC6t37256H Brassica oleracea HOM05D005449 ORTHO05D027985 3.1e-41 171.4 89 100.0
A07p21230 Brassica napus HOM05D005449 ORTHO05D027985 1.1e-17 93.2 54 85.2
BraA07t29810Z Brassica rapa HOM05D005449 ORTHO05D027985 1.1e-17 93.2 54 85.2
AL5G33630 Arabidopsis lyrata HOM05D005449 ORTHO05D006916 6.6e-15 84.0 64 68.8
Manes.05G061600 Manihot esculenta HOM05D005449 ORTHO05D006916 1.8e-09 65.9 64 54.7
THA.LOC104817488 Tarenaya hassleriana HOM05D005449 ORTHO05D006916 1.8e-09 65.9 64 57.8
RcHm_v2.0_Chr4g0408421 Rosa chinensis HOM05D005449 ORTHO05D006916 4.1e-09 64.7 62 54.8
Haze_04950 Corylus avellana HOM05D005449 ORTHO05D006916 5.4e-09 64.3 66 54.5
FAN07G2516 Fragaria x ananassa HOM05D005449 ORTHO05D006916 9.2e-09 63.5 62 53.2
Lj4g0006553 Lotus japonicus HOM05D005449 ORTHO05D006916 9.2e-09 63.5 66 54.5
Cfa005902 Carpinus fangiana HOM05D005449 ORTHO05D006916 1.2e-08 63.2 66 53.0
FAN22G2041 Fragaria x ananassa HOM05D005449 ORTHO05D006916 1.6e-08 62.8 62 53.2
vmacro09952 Vaccinium macrocarpon HOM05D005449 ORTHO05D006916 1.6e-08 62.8 66 50.0
Ca_17681_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 2.0e-08 62.4 66 53.0
Ca_29605_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 2.0e-08 62.4 66 53.0
Migut.D00146 Erythranthe guttata HOM05D005449 ORTHO05D006916 2.7e-08 62.0 62 53.2
FvH4_4g11510 Fragaria vesca HOM05D005449 ORTHO05D006916 2.7e-08 62.0 62 51.6
MD05G1096300 Malus domestica HOM05D005449 ORTHO05D006916 2.7e-08 62.0 66 51.5
Medtr8g092180 Medicago truncatula HOM05D005449 ORTHO05D006916 2.7e-08 62.0 66 53.0
RcHm_v2.0_Chr6g0252941 Rosa chinensis HOM05D005449 ORTHO05D006916 2.7e-08 62.0 66 51.5
Sabra14G0095000 Salix brachista HOM05D005449 ORTHO05D006916 2.7e-08 62.0 66 53.0
TWI14G0435 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 3.5e-08 61.6 66 50.0
TAR636G0282 Trochodendron aralioides HOM05D005449 ORTHO05D006916 3.5e-08 61.6 64 51.6
CANSAT25G1565 Cannabis sativa HOM05D005449 ORTHO05D006916 4.5e-08 61.2 64 51.6
Glyma.05G185600 Glycine max HOM05D005449 ORTHO05D006916 5.9e-08 60.8 64 53.1
Lalb_Chr03g0036381 Lupinus albus HOM05D005449 ORTHO05D006916 5.9e-08 60.8 66 50.0
MD10G1102600 Malus domestica HOM05D005449 ORTHO05D006916 5.9e-08 60.8 66 51.5
Prupe.8G140700 Prunus persica HOM05D005449 ORTHO05D006916 5.9e-08 60.8 66 51.5
Rhsim06G0059700 Rhododendron simsii HOM05D005449 ORTHO05D006916 5.9e-08 60.8 66 50.0
SGA_v2.0_scaffold1G00359 Striga asiatica HOM05D005449 ORTHO05D006916 7.8e-08 60.5 66 51.5
MSTRG.21637 Avicennia marina HOM05D005449 ORTHO05D006916 1.0e-07 60.1 66 50.0
DCAR_002842 Daucus carota HOM05D005449 ORTHO05D006916 1.0e-07 60.1 64 53.1
Phvul.002G266700 Phaseolus vulgaris HOM05D005449 ORTHO05D006916 1.0e-07 60.1 64 53.1
Actinidia07783 Actinidia chinensis HOM05D005449 ORTHO05D006916 1.3e-07 59.7 66 51.5
Aqoxy1G00207 Aquilegia oxysepala HOM05D005449 ORTHO05D006916 1.7e-07 59.3 64 50.0
PGR119G1363 Punica granatum HOM05D005449 ORTHO05D006916 1.7e-07 59.3 64 51.6
RcHm_v2.0_Chr6g0252971 Rosa chinensis HOM05D005449 ORTHO05D006916 1.7e-07 59.3 66 50.0
Potri.014G127900 Populus trichocarpa HOM05D005449 ORTHO05D006916 2.3e-07 58.9 66 50.0
GSVIVG01028030001 Vitis vinifera HOM05D005449 ORTHO05D006916 2.3e-07 58.9 66 50.0
CSS0004919 Camellia sinensis var. sinensis HOM05D005449 ORTHO05D006916 2.9e-07 58.5 66 47.0
CiPaw.07G110200 Carya illinoinensis HOM05D005449 ORTHO05D006916 2.9e-07 58.5 66 50.0
ECA236G0849 Erigeron canadensis HOM05D005449 ORTHO05D006916 2.9e-07 58.5 66 51.5
Dinv33060 Davidia involucrata HOM05D005449 ORTHO05D006916 3.9e-07 58.2 66 48.5
Solyc08g074670.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 3.9e-07 58.2 66 50.0
Sopen08g023260 Solanum pennellii HOM05D005449 ORTHO05D006916 3.9e-07 58.2 66 50.0
CDE05G2918 Ceratophyllum demersum HOM05D005449 ORTHO05D006916 5.0e-07 57.8 66 50.0
Ciclev10022754m.g Citrus clementina HOM05D005449 ORTHO05D006916 5.0e-07 57.8 64 51.6
FAN20G1025 Fragaria x ananassa HOM05D005449 ORTHO05D006916 5.0e-07 57.8 66 47.0
Nn3g21512 Nelumbo nucifera HOM05D005449 ORTHO05D006916 5.0e-07 57.8 64 50.0
Dinv44016 Davidia involucrata HOM05D005449 ORTHO05D006916 6.6e-07 57.4 66 48.5
FAN15G2928 Fragaria x ananassa HOM05D005449 ORTHO05D006916 6.6e-07 57.4 66 47.0
Gohir.A12G129900 Gossypium hirsutum HOM05D005449 ORTHO05D006916 8.6e-07 57.0 66 47.0
Lsat_1_v5_gn_8_164201 Lactuca sativa HOM05D005449 ORTHO05D006916 8.6e-07 57.0 66 48.5
Oeu024404.1 Olea europaea HOM05D005449 ORTHO05D006916 8.6e-07 57.0 64 53.1
QL12p028306 Quercus lobata HOM05D005449 ORTHO05D006916 8.6e-07 57.0 62 50.0
Thhalv10010784m.g Eutrema salsugineum HOM05D005449 ORTHO05D006916 1.1e-06 56.6 37 73.0
Gohir.D12G133700 Gossypium hirsutum HOM05D005449 ORTHO05D006916 1.1e-06 56.6 66 47.0
Gorai.008G144700 Gossypium raimondii HOM05D005449 ORTHO05D006916 1.1e-06 56.6 66 47.0
HanXRQChr06g0163691 Helianthus annuus HOM05D005449 ORTHO05D006916 1.1e-06 56.6 66 48.5
Hma1.2p1_1986F.1_g310070 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.1e-06 56.6 66 48.5
Hma1.2p1_2044F.1_g312372 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.1e-06 56.6 66 48.5
BcaB01g00336 Brassica carinata HOM05D005449 ORTHO05D006916 1.5e-06 56.2 37 73.0
Cpa.g.sc9.253 Carica papaya HOM05D005449 ORTHO05D006916 1.5e-06 56.2 66 47.0
CiPaw.08G094600 Carya illinoinensis HOM05D005449 ORTHO05D006916 1.5e-06 56.2 66 48.5
MELO3C017987.2 Cucumis melo HOM05D005449 ORTHO05D006916 1.5e-06 56.2 66 45.5
Duzib138G1099 Durio zibethinus HOM05D005449 ORTHO05D006916 1.5e-06 56.2 66 48.5
Oeu054120.1 Olea europaea HOM05D005449 ORTHO05D006916 1.5e-06 56.2 64 50.0
Os05g0154900 Oryza sativa ssp. japonica HOM05D005449 ORTHO05D006916 1.5e-06 56.2 64 48.4
Sp5g09480 Schrenkiella parvula HOM05D005449 ORTHO05D006916 1.5e-06 56.2 37 73.0
AT3G52860 Arabidopsis thaliana HOM05D005449 ORTHO05D006916 2.5e-06 55.5 41 65.9
CAN.G857.16 Capsicum annuum HOM05D005449 ORTHO05D006916 2.5e-06 55.5 66 47.0
FAN27G2298 Fragaria x ananassa HOM05D005449 ORTHO05D006916 2.5e-06 55.5 66 45.5
CsaV3_4G000480 Cucumis sativus L. HOM05D005449 ORTHO05D006916 3.3e-06 55.1 66 43.9
MBI18_g24865_MAGBIO Magnolia biondii HOM05D005449 ORTHO05D006916 3.3e-06 55.1 68 48.5
Nitab4.5_0002276g0010 Nicotiana tabacum HOM05D005449 ORTHO05D006916 3.3e-06 55.1 66 47.0
Actinidia21206 Actinidia chinensis HOM05D005449 ORTHO05D006916 4.3e-06 54.7 66 47.0
Sed0024679 Sechium edule HOM05D005449 ORTHO05D006916 4.3e-06 54.7 66 43.9
Hund11156 Selenicereus undatus HOM05D005449 ORTHO05D006916 4.3e-06 54.7 64 46.9
PGSC0003DMG400018921 Solanum tuberosum HOM05D005449 ORTHO05D006916 4.3e-06 54.7 66 47.0
Thecc.01G301700 Theobroma cacao HOM05D005449 ORTHO05D006916 4.3e-06 54.7 66 47.0
Aa31LG10G7880 Aethionema arabicum HOM05D005449 ORTHO05D006916 5.6e-06 54.3 37 67.6
BcaC07g39651 Brassica carinata HOM05D001272 ORTHO05D001843 5.6e-06 54.3 37 70.3
A09p45940 Brassica napus HOM05D005449 ORTHO05D006916 5.6e-06 54.3 37 70.3
BolC8t50425H Brassica oleracea HOM05D005449 ORTHO05D006916 5.6e-06 54.3 37 70.3
Eucgr.F02473 Eucalyptus grandis HOM05D005449 ORTHO05D006916 5.6e-06 54.3 64 48.4
TWI59G1340 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 5.6e-06 54.3 66 43.9
FvH4_2g03920 Fragaria vesca HOM05D005449 ORTHO05D006916 7.3e-06 53.9 66 45.5
Duzib211G0575 Durio zibethinus HOM05D005449 ORTHO05D006916 9.5e-06 53.5 66 43.9
unitig_26.g10174 Utricularia gibba HOM05D005449 ORTHO05D006916 9.5e-06 53.5 66 45.5


User provided reference genes

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