Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 1.4e-142 509.6 258 100.0
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 1.6e-98 363.2 242 81.4
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 2.1e-98 362.8 241 81.7
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 2.1e-98 362.8 241 81.7
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 1.8e-97 359.8 237 82.3
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 1.8e-97 359.8 237 82.3
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 1.8e-97 359.8 237 82.3
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 4.0e-97 358.6 241 80.1
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 5.2e-97 358.2 239 81.2
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 3.4e-96 355.5 239 80.3
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 5.8e-96 354.8 239 80.3
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 7.5e-96 354.4 239 80.8
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 7.1e-94 347.8 239 79.9
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 6.6e-92 341.3 264 73.1
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 5.4e-86 321.6 239 72.4
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 2.6e-80 302.8 265 64.2
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 4.9e-79 298.5 264 64.0
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 8.4e-79 297.7 259 64.1
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 8.4e-79 297.7 264 63.3
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 1.1e-78 297.4 265 63.4
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 1.1e-78 297.4 262 64.1
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 2.4e-78 296.2 239 67.4
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 3.2e-78 295.8 265 64.5
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 3.2e-78 295.8 265 65.3
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 7.1e-78 294.7 258 63.2
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 7.1e-78 294.7 262 63.4
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 9.3e-78 294.3 269 63.2
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 9.3e-78 294.3 259 63.3
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 1.6e-77 293.5 242 66.1
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 2.1e-77 293.1 265 63.8
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 3.5e-77 292.4 241 66.0
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 7.8e-77 291.2 265 63.0
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 1.0e-76 290.8 266 62.4
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 1.3e-76 290.4 266 61.3
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 1.7e-76 290.0 266 63.5
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 1.7e-76 290.0 242 65.7
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 2.3e-76 289.7 243 65.0
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.0e-76 289.3 264 62.5
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 3.9e-76 288.9 264 61.4
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 8.7e-76 287.7 259 62.9
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 1.1e-75 287.3 266 62.4
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 1.1e-75 287.3 265 61.9
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 1.1e-75 287.3 241 65.1
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 1.1e-75 287.3 262 63.4
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 1.5e-75 287.0 264 62.5
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 1.9e-75 286.6 239 64.9
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 5.6e-75 285.0 241 65.1
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 9.6e-75 284.3 236 65.3
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.6e-75 284.3 238 64.7
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 1.6e-74 283.5 244 62.7
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 1.6e-74 283.5 240 67.1
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 1.6e-74 283.5 241 64.3
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 2.1e-74 283.1 239 64.4
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 2.1e-74 283.1 277 59.9
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.1e-74 283.1 236 64.4
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 2.1e-74 283.1 265 61.1
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 2.8e-74 282.7 238 63.9
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 2.8e-74 282.7 240 65.4
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 3.6e-74 282.3 239 64.9
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 3.6e-74 282.3 263 62.0
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 3.6e-74 282.3 243 64.6
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 3.6e-74 282.3 240 65.0
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 4.8e-74 282.0 236 65.7
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 6.2e-74 281.6 238 65.5
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 6.2e-74 281.6 236 65.3
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 8.1e-74 281.2 264 59.8
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 8.1e-74 281.2 239 64.4
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 1.1e-73 280.8 240 62.9
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.4e-73 280.4 236 65.3
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 1.8e-73 280.0 239 63.6
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.4e-73 279.6 238 63.9
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 2.4e-73 279.6 264 60.6
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 2.4e-73 279.6 238 65.1
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.0e-73 278.9 239 64.9
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 4.0e-73 278.9 240 65.8
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 6.9e-73 278.1 237 64.1
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 9.0e-73 277.7 237 63.3
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 9.0e-73 277.7 240 64.2
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 1.2e-72 277.3 240 64.6
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 1.5e-72 276.9 260 60.4
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 2.6e-72 276.2 263 58.9
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 2.6e-72 276.2 241 63.9
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 4.4e-72 275.4 258 61.6
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.8e-72 275.0 239 64.4
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 5.8e-72 275.0 234 65.0
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 7.6e-72 274.6 240 64.2
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 9.9e-72 274.2 236 62.3
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 2.9e-71 272.7 263 60.1
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 6.4e-71 271.6 261 58.6
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.1e-70 270.8 236 61.4
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.4e-70 269.6 222 64.9
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 2.4e-70 269.6 242 62.4
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 3.2e-70 269.2 172 83.7
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 3.2e-70 269.2 240 61.2
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 2.1e-69 266.5 234 62.0
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 3.5e-69 265.8 243 61.7
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 3.3e-67 259.2 235 60.9
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 4.3e-67 258.8 267 55.1
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 5.6e-67 258.5 235 60.9
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 1.6e-66 256.9 263 56.7
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.1e-66 256.5 240 60.8
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.6e-66 255.8 240 60.8
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 3.6e-66 255.8 277 56.7
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 3.1e-65 252.7 243 60.1
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 6.9e-65 251.5 258 57.0
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 9.9e-64 247.7 235 60.4
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 2.7e-61 239.6 265 54.7
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 7.9e-61 238.0 238 56.3
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 3.0e-60 236.1 239 58.2
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 8.1e-58 228.0 263 52.1
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 4.0e-57 225.7 241 54.4
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 9.0e-57 224.6 252 50.4
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 9.0e-57 224.6 300 49.0
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 2.6e-56 223.0 236 55.9
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 3.4e-56 222.6 234 56.8
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 1.3e-55 220.7 264 51.1
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.6e-53 213.8 218 53.7
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 2.7e-53 213.0 246 51.6
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 1.8e-52 210.3 263 49.4
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 6.7e-52 208.4 200 58.5
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 3.3e-51 206.1 309 44.7
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 1.3e-50 204.1 200 57.5
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 1.4e-49 200.7 218 53.7
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 3.2e-46 189.5 141 70.9
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 5.3e-41 172.2 148 64.9
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 6.5e-39 165.2 151 59.6
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 1.6e-37 160.6 124 69.4
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 4.8e-34 149.1 85 90.6
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.3e-34 148.7 140 57.1
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 8.2e-34 148.3 140 57.9
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.1e-33 147.9 140 57.1
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.4e-33 147.5 191 45.0
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 9.1e-33 144.8 485 28.9
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 3.4e-32 142.9 272 34.9
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 5.9e-32 142.1 331 31.7
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 7.7e-32 141.7 167 50.3
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.1e-30 137.9 110 68.2
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.9e-30 137.1 168 50.0
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.4e-27 125.9 128 53.9
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.4e-27 125.2 156 46.8
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.8e-25 120.6 193 42.0
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.0e-23 112.5 149 46.3
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 1.1e-22 111.3 126 53.2
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 4.2e-22 109.4 95 63.2
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 3.0e-20 103.2 106 54.7
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.1e-17 92.8 72 63.9
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 4.0e-12 76.3 53 69.8
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 8.8e-12 75.1 199 33.7
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 1.7e-10 70.9 214 27.1
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.0e-07 61.6 71 53.5
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 6.5e-07 58.9 50 66.0


User provided reference genes

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