Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 5.5e-148 527.7 283 100.0
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 5.5e-148 527.7 283 100.0
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 6.0e-139 497.7 283 95.8
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 5.9e-134 481.1 285 93.3
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 4.2e-132 474.9 286 92.7
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 1.1e-113 413.7 290 82.8
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.3e-93 347.1 288 73.3
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 4.7e-91 338.6 293 71.3
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.2e-89 334.0 296 70.3
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 7.0e-87 324.7 294 69.4
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 1.2e-57 227.6 213 68.5
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 2.8e-43 179.9 320 45.9
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 6.4e-40 168.7 294 47.6
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 2.1e-38 163.7 302 46.4
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 1.0e-37 161.4 303 46.2
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 2.3e-37 160.2 283 46.6
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 3.9e-37 159.5 294 46.3
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 6.7e-37 158.7 288 46.5
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 1.1e-36 157.9 306 45.8
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 9.6e-36 154.8 293 45.4
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 1.3e-35 154.5 290 45.9
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.8e-32 142.9 176 52.8
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 8.4e-32 141.7 176 52.3
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 8.4e-32 141.7 169 53.8
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 1.1e-31 141.4 176 52.8
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.9e-31 140.6 301 43.5
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.9e-31 140.6 176 52.3
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 2.4e-31 140.2 187 49.7
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 9.3e-31 138.3 169 53.8
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 9.3e-31 138.3 169 53.8
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 1.2e-30 137.9 192 51.0
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 6.0e-30 135.6 189 49.2
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.0e-29 133.3 179 53.1
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 3.0e-29 133.3 179 53.1
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 5.1e-29 132.5 180 51.1
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 8.7e-29 131.7 304 40.1
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.5e-28 131.0 179 52.5
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 3.3e-28 129.8 188 50.0
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 5.6e-28 129.0 204 47.1
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 9.6e-28 128.3 176 49.4
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 1.6e-27 127.5 171 49.7
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 3.7e-27 126.3 177 52.0
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 3.7e-27 126.3 176 48.9
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 8.2e-27 125.2 200 48.0
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 8.2e-27 125.2 185 47.6
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 8.2e-27 125.2 263 40.7
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.1e-26 123.2 162 50.0
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.1e-26 123.2 162 50.0
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 3.1e-26 123.2 164 48.8
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 4.0e-26 122.9 188 43.6
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 4.0e-26 122.9 174 48.9
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 4.0e-26 122.9 170 50.0
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 5.3e-26 122.5 198 44.9
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 5.3e-26 122.5 172 49.4
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 6.9e-26 122.1 172 50.0
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 9.0e-26 121.7 188 43.1
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 9.0e-26 121.7 179 48.6
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 1.2e-25 121.3 263 40.7
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 1.5e-25 120.9 185 45.4
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 1.5e-25 120.9 201 45.8
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 2.0e-25 120.6 180 50.0
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 2.0e-25 120.6 180 50.0
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 2.6e-25 120.2 299 39.1
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 2.6e-25 120.2 194 44.8
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 7.6e-25 118.6 201 44.8
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.2e-24 117.1 172 47.7
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 4.9e-24 115.9 179 46.4
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 4.9e-24 115.9 176 48.3
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 8.4e-24 115.2 188 44.1
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 8.4e-24 115.2 215 43.7
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 8.4e-24 115.2 179 45.8
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 1.4e-23 114.4 176 46.0
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 1.4e-23 114.4 184 47.3
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 2.5e-23 113.6 190 45.3
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 4.2e-23 112.8 199 41.7
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 9.3e-23 111.7 198 47.0
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 1.6e-22 110.9 244 39.3
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 2.1e-22 110.5 194 44.3
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 1.0e-21 108.2 181 40.9
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 1.3e-21 107.8 197 44.2
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 2.3e-21 107.1 169 43.8
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 3.9e-21 106.3 179 45.8
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 3.9e-21 106.3 185 44.3
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 3.9e-21 106.3 190 44.2
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 8.7e-21 105.1 194 43.8
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 1.1e-20 104.8 182 43.4
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 1.5e-20 104.4 208 39.4
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 1.5e-20 104.4 197 44.2
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.9e-20 104.0 187 42.8
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.3e-20 103.2 188 43.6
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.3e-20 103.2 188 43.6
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 4.3e-20 102.8 170 43.5
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 4.3e-20 102.8 157 45.2
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 9.7e-20 101.7 178 43.3
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 2.2e-19 100.5 187 42.2
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 2.8e-19 100.1 183 41.5
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 2.8e-19 100.1 162 45.1
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 3.7e-19 99.8 179 43.0
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 4.8e-19 99.4 223 39.0
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 6.3e-19 99.0 184 42.9
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 8.2e-19 98.6 148 44.6
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 8.2e-19 98.6 193 42.5
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 1.4e-18 97.8 173 42.2
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 1.8e-18 97.4 189 41.3
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 4.1e-18 96.3 178 42.1
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 4.1e-18 96.3 172 41.9
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 6.9e-18 95.5 181 44.2
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 1.2e-17 94.7 193 42.5
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.5e-17 94.4 192 39.1
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.0e-17 94.0 202 36.6
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 5.9e-17 92.4 190 39.5
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 3.8e-16 89.7 184 39.7
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 2.5e-15 87.0 180 40.0
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 5.5e-15 85.9 194 37.6
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 3.3e-12 76.6 130 43.8
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 4.3e-12 76.3 172 36.6
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 1.7e-11 74.3 167 37.1
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 4.8e-11 72.8 149 42.3
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 2.4e-10 70.5 114 45.6
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 3.1e-10 70.1 87 49.4
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 4.1e-10 69.7 125 40.0
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 6.9e-10 68.9 175 37.1
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 6.9e-10 68.9 192 35.9
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.2e-08 63.9 109 41.3
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 2.9e-08 63.5 188 33.0
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 8.5e-08 62.0 102 42.2
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.1e-07 61.6 101 42.6
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.1e-07 61.6 101 42.6
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.1e-07 61.6 101 42.6
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.4e-07 61.2 126 40.5
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.4e-07 61.2 126 40.5
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 3.2e-07 60.1 111 44.1
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 7.2e-07 58.9 108 42.6
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 9.4e-07 58.5 140 40.0
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 9.4e-07 58.5 111 43.2
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 1.6e-06 57.8 58 55.2
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.1e-06 57.4 56 62.5
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 2.7e-06 57.0 111 44.1
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.6e-06 56.6 143 39.2
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 3.6e-06 56.6 143 39.2
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 3.6e-06 56.6 91 45.1
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 3.6e-06 56.6 146 35.6
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 4.7e-06 56.2 143 39.2
EL10Ac5g12894 Beta vulgaris HOM05D005006 ORTHO05D005903 6.1e-06 55.8 104 38.5
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 6.1e-06 55.8 52 55.8


User provided reference genes

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