Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 3841.6 1945 100.0
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 3779.6 1972 97.7
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 3774.2 1945 98.3
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 3722.6 1946 96.9
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 3699.1 1973 95.4
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 3464.1 1951 90.2
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 3417.9 1951 88.5
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 3399.8 1810 95.2
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 3327.0 1958 86.5
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 3310.0 1942 86.4
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 3301.9 1947 86.2
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 3286.9 1947 85.8
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 3050.0 1997 77.8
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2806.5 1956 72.4
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2233.0 1975 57.6
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2222.6 1978 58.0
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2221.0 1980 57.6
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2204.1 1971 57.3
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2192.2 1978 57.0
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2192.2 1970 57.4
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2188.7 1975 57.1
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2184.5 1969 57.7
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2166.3 1970 57.1
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2158.3 1981 56.4
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2151.7 1976 56.2
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2149.4 1995 56.4
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2148.6 1972 56.6
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2140.9 2040 55.0
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2135.5 1972 55.6
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2130.1 1974 55.8
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2125.1 1981 55.7
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2112.0 1981 55.8
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2110.9 1973 55.8
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2093.5 1961 55.8
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2092.8 1976 55.3
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2088.5 1981 55.0
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2081.2 1955 55.4
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2080.1 1966 55.3
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2061.2 2172 51.5
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2057.0 1979 54.4
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2053.9 1974 54.0
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2047.3 1939 55.1
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2040.8 1977 54.0
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2034.6 1990 54.6
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2033.5 1968 54.4
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2020.7 1865 55.7
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2019.2 2164 50.5
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2011.5 1962 53.6
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2010.3 1973 53.3
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2003.0 1975 52.8
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 1992.2 1965 52.7
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1985.7 1811 55.8
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 1984.1 2279 48.2
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 1983.0 1977 52.6
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 1979.9 1986 52.3
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 1979.9 1977 52.5
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 1973.4 1963 52.4
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 1968.7 2152 50.5
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 1965.7 1975 52.4
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1964.5 1860 54.6
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 1955.3 1987 52.7
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1947.9 1982 51.8
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 1943.3 1944 52.2
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 1936.4 1959 53.0
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 1929.1 1969 52.1
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1927.9 1979 51.5
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1917.1 1948 52.6
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1905.2 1970 51.7
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 1900.6 1968 51.5
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 1893.2 1605 60.1
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 1863.2 1965 50.7
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1857.8 1971 50.7
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1847.4 1949 51.3
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1832.0 2010 49.9
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1814.7 1972 50.1
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1809.3 1940 49.3
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1751.1 1991 47.2
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1519.2 1180 63.9
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1423.7 1278 57.0
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1357.4 1276 55.0
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1330.9 1835 40.7
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1230.3 2000 38.0
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1226.8 2070 36.5
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1191.0 1081 56.9
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1156.7 2029 35.7
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1098.6 1439 44.3
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1088.6 991 56.3
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 8.0e-299 1031.6 1172 49.1
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 1.2e-289 1001.1 2147 33.0
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 7.8e-254 882.1 783 57.2
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 2.4e-247 860.5 1102 45.2
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 2.5e-236 823.9 1004 44.8
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 5.3e-234 816.2 957 48.1
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 9.7e-220 768.8 521 76.2
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.3e-216 758.4 972 45.2
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 6.3e-211 739.6 901 46.2
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 2.1e-206 724.5 798 50.8
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 9.2e-162 576.2 489 59.9
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 7.5e-156 556.6 674 47.5
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 1.7e-152 545.4 523 51.6
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 1.1e-143 516.2 537 50.5
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 1.5e-124 452.6 666 40.5
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 5.8e-124 450.7 394 58.1
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 3.0e-120 438.3 341 69.5
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 1.1e-119 436.4 291 72.5
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 3.7e-118 431.4 464 47.4
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 6.0e-113 414.1 446 47.3
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 1.9e-103 382.5 859 32.0
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 6.1e-97 360.9 224 77.2
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 3.7e-86 325.1 258 60.9
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.9e-83 315.5 380 45.0
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 1.1e-79 303.5 355 50.7
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 6.1e-57 228.0 243 48.1
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 7.8e-52 211.1 330 39.7
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 2.3e-48 199.5 288 44.4
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 1.5e-47 196.8 208 48.1
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 2.6e-47 196.1 208 47.1
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 9.2e-45 187.6 237 47.7
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 1.6e-44 186.8 335 37.3
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 3.5e-44 185.7 527 29.0
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 4.7e-41 175.3 293 35.2
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 2.0e-39 169.9 145 64.1
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 1.7e-38 166.8 281 38.1
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 4.9e-38 165.2 125 67.2
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 5.6e-34 151.8 176 43.8
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 3.4e-31 142.5 141 49.6
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 7.6e-31 141.4 104 71.2
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 2.1e-28 133.3 579 25.2
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 1.5e-26 127.1 93 67.7
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 6.2e-25 121.7 191 38.7
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 1.4e-24 120.6 291 30.9
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 1.5e-23 117.1 221 34.4
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 9.9e-23 114.4 107 53.3
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 1.1e-21 110.9 120 48.3
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 1.4e-21 110.5 118 48.3
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 5.4e-21 108.6 94 56.4
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 9.3e-21 107.8 140 44.3
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.0e-19 104.4 163 41.1
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 1.3e-19 104.0 116 50.9
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 1.3e-19 104.0 116 50.9
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.3e-19 104.0 89 57.3
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.3e-19 104.0 89 57.3
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 3.0e-19 102.8 89 56.2
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 3.6e-17 95.9 145 43.4
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 1.4e-16 94.0 137 40.9
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 1.5e-15 90.5 208 28.8
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 1.6e-12 80.5 95 43.2
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 1.0e-11 77.8 146 36.3
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 1.3e-11 77.4 88 42.0
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 1.8e-11 77.0 58 58.6
BcaC08g43232 Brassica carinata HOM05D004963 ORTHO05D039387 1.1e-10 74.3 56 69.6
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 4.8e-09 68.9 87 43.7
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 8.1e-09 68.2 126 34.1
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 8.1e-09 68.2 72 41.7
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 9.0e-08 64.7 51 56.9
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 3.8e-06 59.3 139 29.5


User provided reference genes

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