Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37046H Brassica oleracea HOM05D005159 ORTHO05D006237 7.1e-122 440.7 230 100.0
C06p18340 Brassica napus HOM05D005159 ORTHO05D006237 2.3e-112 409.1 215 100.0
BcaB06g27239 Brassica carinata HOM05D005159 ORTHO05D006237 2.2e-75 286.2 201 79.1
Sp7g03200 Schrenkiella parvula HOM05D005159 ORTHO05D006237 5.4e-69 265.0 204 74.0
BcaC02g09665 Brassica carinata HOM05D005159 ORTHO05D006237 1.7e-67 260.0 151 90.1
C04p45340 Brassica napus HOM05D005159 ORTHO05D006237 1.7e-67 260.0 151 90.1
BolC4t26116H Brassica oleracea HOM05D005159 ORTHO05D006237 1.7e-67 260.0 151 90.1
BraA04t16828Z Brassica rapa HOM05D005159 ORTHO05D006237 1.7e-67 260.0 151 90.1
A04p11610 Brassica napus HOM05D005159 ORTHO05D006237 2.3e-67 259.6 152 89.5
Thhalv10028147m.g Eutrema salsugineum HOM05D005159 ORTHO05D006237 2.5e-66 256.1 202 72.3
AT5G38720 Arabidopsis thaliana HOM05D005159 ORTHO05D006237 3.6e-65 252.3 204 70.1
AL7G51700 Arabidopsis lyrata HOM05D005159 ORTHO05D006237 3.0e-64 249.2 185 74.1
Carub.0007s3714 Capsella rubella HOM05D005159 ORTHO05D006237 3.0e-64 249.2 234 62.0
BcaC08g44401 Brassica carinata HOM05D005159 ORTHO05D006237 2.8e-62 242.7 136 93.4
Aa31LG9G16930 Aethionema arabicum HOM05D005159 ORTHO05D006237 3.7e-62 242.3 201 70.1
THA.LOC104805544 Tarenaya hassleriana HOM05D005159 ORTHO05D006237 1.3e-59 233.8 207 66.2
MD09G1079700 Malus domestica HOM05D005159 ORTHO05D006237 1.7e-54 216.9 154 72.7
Ciclev10012260m.g Citrus clementina HOM05D005159 ORTHO05D006237 1.1e-53 214.2 188 64.9
Prupe.3G244000 Prunus persica HOM05D005159 ORTHO05D006237 4.1e-53 212.2 153 72.5
Cpa.g.sc70.15 Carica papaya HOM05D005159 ORTHO05D006237 2.7e-52 209.5 188 62.8
Actinidia18107 Actinidia chinensis HOM05D005159 ORTHO05D006237 6.0e-52 208.4 190 61.6
Duzib211G0079 Durio zibethinus HOM05D005159 ORTHO05D006237 1.0e-51 207.6 185 62.7
TWI32G0838 Tripterygium wilfordii HOM05D005159 ORTHO05D006237 1.0e-51 207.6 188 60.6
Dinv33896 Davidia involucrata HOM05D005159 ORTHO05D006237 1.3e-51 207.2 170 66.5
MD17G1070200 Malus domestica HOM05D005159 ORTHO05D006237 1.3e-51 207.2 153 69.9
GSVIVG01036491001 Vitis vinifera HOM05D005159 ORTHO05D006237 3.0e-51 206.1 195 61.0
Sed0002827 Sechium edule HOM05D005159 ORTHO05D006237 8.6e-51 204.5 182 63.7
CsaV3_5G013180 Cucumis sativus L. HOM05D005159 ORTHO05D006237 1.5e-50 203.8 182 61.5
Eucgr.I02096 Eucalyptus grandis HOM05D005159 ORTHO05D006237 1.5e-50 203.8 188 60.1
MELO3C020033.2 Cucumis melo HOM05D005159 ORTHO05D006237 1.9e-50 203.4 182 61.5
Migut.K00872 Erythranthe guttata HOM05D005159 ORTHO05D006237 3.3e-50 202.6 157 68.8
Sed0024356 Sechium edule HOM05D005159 ORTHO05D006237 3.3e-50 202.6 182 61.0
Glyma.07G204700 Glycine max HOM05D005159 ORTHO05D006237 4.3e-50 202.2 184 60.9
ClCG11G001130 Citrullus lanatus HOM05D005159 ORTHO05D006237 5.6e-50 201.8 182 62.1
MBI15_g18197_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 7.3e-50 201.4 188 60.6
arahy.Tifrunner.gnm1.ann1.MEN3PN Arachis hypogaea HOM05D005159 ORTHO05D006237 9.5e-50 201.1 154 66.2
MSTRG.15424 Avicennia marina HOM05D005159 ORTHO05D006237 9.5e-50 201.1 182 60.4
Phvul.008G006700 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 1.2e-49 200.7 182 61.0
Lju237A1T66 Lonicera japonica HOM05D005159 ORTHO05D006237 2.1e-49 199.9 154 67.5
SGA_v2.0_scaffold10G05141 Striga asiatica HOM05D005159 ORTHO05D006237 2.8e-49 199.5 211 54.5
Peaxi162Scf00479g00439 Petunia axillaris HOM05D005159 ORTHO05D006237 4.7e-49 198.7 187 60.4
CANSAT21G0179 Cannabis sativa HOM05D005159 ORTHO05D006237 6.2e-49 198.4 210 54.8
Medtr4g051625 Medicago truncatula HOM05D005159 ORTHO05D006237 2.3e-48 196.4 182 61.5
Gohir.A13G118100 Gossypium hirsutum HOM05D005159 ORTHO05D006237 3.1e-48 196.1 212 53.8
SalBow1G7987 Salvia bowleyana HOM05D005159 ORTHO05D006237 3.1e-48 196.1 205 56.1
Thecc.04G145900 Theobroma cacao HOM05D005159 ORTHO05D006237 3.1e-48 196.1 162 64.2
Potri.017G108700 Populus trichocarpa HOM05D005159 ORTHO05D006237 1.2e-47 194.1 177 61.6
Nitab4.5_0001982g0030 Nicotiana tabacum HOM05D005159 ORTHO05D006237 2.0e-47 193.4 191 57.1
Ca_13657_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 3.4e-47 192.6 182 59.3
Gorai.013G136600 Gossypium raimondii HOM05D005159 ORTHO05D006237 3.4e-47 192.6 212 52.8
Nn1g09575 Nelumbo nucifera HOM05D005159 ORTHO05D006237 5.8e-47 191.8 191 58.6
Nitab4.5_0006224g0050 Nicotiana tabacum HOM05D005159 ORTHO05D006237 7.5e-47 191.4 191 55.5
Gohir.D13G121900 Gossypium hirsutum HOM05D005159 ORTHO05D006237 9.8e-47 191.0 212 52.4
PGR004G1892 Punica granatum HOM05D005159 ORTHO05D006237 2.2e-46 189.9 162 61.7
Manes.01G106500 Manihot esculenta HOM05D005159 ORTHO05D006237 3.7e-46 189.1 183 59.6
PGSC0003DMG400010100 Solanum tuberosum HOM05D005159 ORTHO05D006237 3.7e-46 189.1 199 55.8
Sopen03g009860 Solanum pennellii HOM05D005159 ORTHO05D006237 4.9e-46 188.7 184 58.2
Sabra04G0075100 Salix brachista HOM05D005159 ORTHO05D006237 6.4e-46 188.3 212 53.3
Hund27686 Selenicereus undatus HOM05D005159 ORTHO05D006237 6.4e-46 188.3 230 53.5
Hund27687 Selenicereus undatus HOM05D005159 ORTHO05D006237 6.4e-46 188.3 230 53.5
Solyc03g046350.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 8.3e-46 188.0 184 58.2
CDE01G0131 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 1.1e-45 187.6 205 55.6
Solyc02g089600.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 1.1e-45 187.6 217 53.0
Oeu062202.1 Olea europaea HOM05D005159 ORTHO05D006237 1.4e-45 187.2 147 67.3
PSO017G6426 Papaver somniferum HOM05D005159 ORTHO05D006237 1.4e-45 187.2 151 65.6
Potri.004G106900 Populus trichocarpa HOM05D005159 ORTHO05D006237 1.4e-45 187.2 189 58.2
AUR62016605 Chenopodium quinoa HOM05D005159 ORTHO05D006237 2.4e-45 186.4 183 60.1
DCAR_026285 Daucus carota HOM05D005159 ORTHO05D006237 3.2e-45 186.0 158 64.6
Cc08_g12050 Coffea canephora HOM05D005159 ORTHO05D006237 4.1e-45 185.7 154 63.0
CAN.G497.25 Capsicum annuum HOM05D005159 ORTHO05D006237 5.4e-45 185.3 212 51.9
Peaxi162Scf01056g00019 Petunia axillaris HOM05D005159 ORTHO05D006237 9.2e-45 184.5 196 55.1
Sc10g0001500 Simmondsia chinensis HOM05D005159 ORTHO05D006237 1.6e-44 183.7 208 54.3
arahy.Tifrunner.gnm1.ann1.VE7QKQ Arachis hypogaea HOM05D005159 ORTHO05D006237 2.7e-44 183.0 185 56.2
Medtr8g085800 Medicago truncatula HOM05D005159 ORTHO05D006237 2.7e-44 183.0 142 68.3
PGSC0003DMG400018775 Solanum tuberosum HOM05D005159 ORTHO05D006237 4.6e-44 182.2 205 52.7
Ah.08g217340 Amaranthus hybridus HOM05D005159 ORTHO05D006237 7.8e-44 181.4 151 65.6
Ah.15g094970 Amaranthus hybridus HOM05D005159 ORTHO05D006237 7.8e-44 181.4 182 59.9
EL10Ac7g16490 Beta vulgaris HOM05D005159 ORTHO05D006237 1.3e-43 180.6 208 53.8
MBI15_g38433_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 1.7e-43 180.3 205 55.6
Ca_26327_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 3.0e-43 179.5 211 51.2
unitig_61.g26382 Utricularia gibba HOM05D005159 ORTHO05D006237 3.0e-43 179.5 146 65.1
TPR.G37714 Trifolium pratense HOM05D005159 ORTHO05D006237 6.6e-43 178.3 182 56.6
Glyma.13G171200 Glycine max HOM05D005159 ORTHO05D006237 1.9e-42 176.8 136 67.6
PSO478G0642 Papaver somniferum HOM05D005159 ORTHO05D006237 2.5e-42 176.4 154 61.7
Psat6g166480 Pisum sativum HOM05D005159 ORTHO05D006237 7.3e-42 174.9 155 60.0
CiPaw.03G007500 Carya illinoinensis HOM05D005159 ORTHO05D006237 4.7e-41 172.2 240 46.2
Aqoxy3G00614 Aquilegia oxysepala HOM05D005159 ORTHO05D006237 8.1e-41 171.4 190 55.3
CARHR291790 Cardamine hirsuta HOM05D005159 ORTHO05D006237 8.1e-41 171.4 144 68.1
Actinidia36292 Actinidia chinensis HOM05D005159 ORTHO05D006237 1.1e-40 171.0 132 70.5
FvH4_6g45790 Fragaria vesca HOM05D005159 ORTHO05D006237 1.8e-40 170.2 161 60.2
FAN09G0042 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.8e-40 170.2 161 60.2
Medtr1g090650 Medicago truncatula HOM05D005159 ORTHO05D006237 5.2e-40 168.7 190 51.6
Lsat_1_v5_gn_8_24161 Lactuca sativa HOM05D005159 ORTHO05D006237 6.8e-40 168.3 158 57.6
HPP92_015315 Vanilla planifolia HOM05D005159 ORTHO05D006237 6.8e-40 168.3 188 52.7
Atru.chr11.1725 Acer truncatum HOM05D005159 ORTHO05D006237 8.9e-40 167.9 134 65.7
AUR62011452 Chenopodium quinoa HOM05D005159 ORTHO05D006237 8.9e-40 167.9 260 45.4
ECA240G3626 Erigeron canadensis HOM05D005159 ORTHO05D006237 8.9e-40 167.9 193 51.8
HanXRQChr03g0078031 Helianthus annuus HOM05D005159 ORTHO05D006237 8.9e-40 167.9 181 53.6
CDE02G0002 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 2.0e-39 166.8 136 64.0
QL02p054338 Quercus lobata HOM05D005159 ORTHO05D006237 5.8e-39 165.2 265 42.3
Os02g0728700 Oryza sativa ssp. japonica HOM05D005159 ORTHO05D006237 7.5e-39 164.9 204 52.5
Psat7g186040 Pisum sativum HOM05D002527 ORTHO05D002865 9.9e-39 164.5 173 57.2
VMungo1383G3720 Vigna mungo HOM05D005159 ORTHO05D006237 1.3e-38 164.1 182 54.4
Phvul.001G061500 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 2.2e-38 163.3 182 54.9
FAN05G5180 Fragaria x ananassa HOM05D005159 ORTHO05D006237 2.9e-38 162.9 166 56.6
Zm00001eb253420 Zea mays HOM05D005159 ORTHO05D006237 2.9e-38 162.9 210 53.3
FAN02G2008 Fragaria x ananassa HOM05D005159 ORTHO05D006237 3.7e-38 162.5 144 61.1
Rhsim08G0081100 Rhododendron simsii HOM05D005159 ORTHO05D006237 3.7e-38 162.5 185 56.8
Lalb_Chr18g0059201 Lupinus albus HOM05D005159 ORTHO05D006237 4.9e-38 162.2 161 57.1
TAR371G0967 Trochodendron aralioides HOM05D005159 ORTHO05D006237 1.9e-37 160.2 155 59.4
Lj6g0020881 Lotus japonicus HOM05D005159 ORTHO05D006237 7.1e-37 158.3 182 51.6
CSS0013880 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 9.2e-37 157.9 155 58.1
COL.COLO4_37042 Corchorus olitorius HOM05D005159 ORTHO05D006237 9.2e-37 157.9 157 55.4
RcHm_v2.0_Chr2g0163971 Rosa chinensis HOM05D005159 ORTHO05D006237 1.2e-36 157.5 138 62.3
CSS0007706 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 7.8e-36 154.8 155 58.1
CSS0044288 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 7.8e-36 154.8 155 58.1
vmacro18090 Vaccinium macrocarpon HOM05D005159 ORTHO05D006237 5.1e-35 152.1 183 53.0
Sopen02g034320 Solanum pennellii HOM05D005159 ORTHO05D006237 5.6e-34 148.7 189 50.3
AUR62026768 Chenopodium quinoa HOM05D005159 ORTHO05D006237 1.2e-33 147.5 125 64.8
ATR0691G244 Amborella trichopoda HOM05D005159 ORTHO05D006237 8.1e-33 144.8 191 49.7
TAR629G0318 Trochodendron aralioides HOM05D005159 ORTHO05D006237 4.0e-32 142.5 137 58.4
TPR.G28602 Trifolium pratense HOM05D005159 ORTHO05D006237 5.2e-32 142.1 153 54.2
CSS0028445 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 2.2e-30 136.7 155 54.8
SEGI_21798 Sequoiadendron giganteum HOM05D005159 ORTHO05D006237 4.9e-30 135.6 130 59.2
Nn8g41096 Nelumbo nucifera HOM05D005159 ORTHO05D006237 2.1e-28 130.2 191 44.0
arahy.Tifrunner.gnm1.ann1.3J3UL0 Arachis hypogaea HOM05D005159 ORTHO05D006237 4.6e-28 129.0 132 53.8
Haze_14082 Corylus avellana HOM05D005159 ORTHO05D006237 2.5e-26 123.2 206 42.2
Pp3c10_24110 Physcomitrium patens HOM05D005159 ORTHO05D006237 2.5e-26 123.2 183 47.0
FAN14G1445 Fragaria x ananassa HOM05D005159 ORTHO05D006237 9.6e-26 121.3 104 64.4
Mapoly0058s0026 Marchantia polymorpha HOM05D005159 ORTHO05D006237 1.6e-25 120.6 133 51.9
Lj7A7T32 Lonicera japonica HOM05D005159 ORTHO05D006237 4.0e-24 115.9 150 46.7
TAR629G0746 Trochodendron aralioides HOM05D005159 ORTHO05D006237 4.4e-23 112.5 95 60.0
SMO196G0176 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 2.1e-20 103.6 166 41.0
AUR62013504 Chenopodium quinoa HOM05D000258 ORTHO05D006237 1.0e-19 101.3 91 62.6
CBR_g4867 Chara braunii HOM05D005159 ORTHO05D006237 1.3e-17 94.4 137 42.3
MCO13G254 Micromonas commoda HOM05D005159 ORTHO05D006237 2.2e-14 83.6 137 40.1
SMO234G0023 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 5.4e-13 79.0 119 40.3
Medtr8g085830 Medicago truncatula HOM05D005159 ORTHO05D006237 1.6e-12 77.4 101 49.5
arahy.Tifrunner.gnm1.ann1.YDKP0V Arachis hypogaea HOM05D005159 ORTHO05D006237 5.1e-11 72.4 85 49.4
Oeu062205.1 Olea europaea HOM05D005159 ORTHO05D006237 2.5e-10 70.1 83 48.2
Cre01.g052200 Chlamydomonas reinhardtii HOM05D005159 ORTHO05D006237 4.8e-09 65.9 141 34.8
CBR_g52693 Chara braunii HOM05D005159 ORTHO05D006237 4.5e-07 59.3 172 29.7
PRCOL_00005361 Prasinoderma coloniale HOM05D005159 ORTHO05D006237 5.8e-07 58.9 140 30.7
AagrBONN_evm.TU.Sc2ySwM_369.363 Anthoceros agrestis HOM05D005159 ORTHO05D006237 2.9e-06 56.6 195 30.3
QL06p007211 Quercus lobata HOM05D005159 ORTHO05D006237 6.4e-06 55.5 56 57.1


User provided reference genes

Program Settings