Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 8.5e-157 557.0 287 100.0
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 8.5e-157 557.0 287 100.0
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 3.0e-154 548.5 287 98.6
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 2.7e-150 535.4 287 96.2
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 4.5e-150 534.6 287 95.8
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 3.6e-139 498.4 289 90.0
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 1.5e-137 493.0 288 88.5
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 1.1e-135 486.9 291 86.9
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 7.5e-129 464.2 291 84.2
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 4.9e-128 461.5 291 82.5
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 3.5e-126 455.3 291 82.8
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 9.2e-119 430.6 291 77.7
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 8.9e-114 414.1 267 81.6
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 1.2e-110 403.7 291 74.6
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 2.7e-102 375.9 233 81.1
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 1.1e-98 364.0 231 79.2
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 2.6e-97 359.4 229 77.7
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 4.4e-97 358.6 231 78.8
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 3.2e-95 352.4 281 68.7
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 7.1e-95 351.3 245 74.3
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 9.3e-95 350.9 280 69.6
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 9.3e-95 350.9 224 79.0
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 9.3e-95 350.9 245 73.9
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 1.2e-94 350.5 245 74.3
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 1.6e-94 350.1 222 77.9
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 2.1e-94 349.7 232 78.9
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 2.1e-94 349.7 222 77.5
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 2.1e-94 349.7 222 80.6
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 2.7e-94 349.4 226 79.2
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 3.5e-94 349.0 223 79.8
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 6.0e-94 348.2 287 65.5
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 6.0e-94 348.2 227 79.3
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 1.0e-93 347.4 281 66.5
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 1.0e-93 347.4 222 79.3
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 1.7e-93 346.7 229 76.4
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 2.3e-93 346.3 225 78.2
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 3.0e-93 345.9 247 72.1
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 3.0e-93 345.9 225 78.2
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 3.9e-93 345.5 284 65.8
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 3.9e-93 345.5 229 78.6
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 6.6e-93 344.7 232 75.0
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 6.6e-93 344.7 226 77.4
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 8.7e-93 344.4 235 75.7
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 8.7e-93 344.4 222 78.4
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 1.5e-92 343.6 228 74.6
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 2.5e-92 342.8 239 75.3
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 2.5e-92 342.8 222 77.9
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 3.3e-92 342.4 222 77.9
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 9.6e-92 340.9 225 77.3
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 9.6e-92 340.9 232 75.0
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 1.3e-91 340.5 224 78.6
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 1.3e-91 340.5 233 74.7
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 1.3e-91 340.5 227 78.4
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 4.8e-91 338.6 230 75.2
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 4.8e-91 338.6 230 74.3
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 4.8e-91 338.6 216 77.3
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 8.1e-91 337.8 226 74.3
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 1.8e-90 336.7 234 72.6
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 1.8e-90 336.7 233 74.7
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 4.0e-90 335.5 213 79.8
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 4.0e-90 335.5 213 79.8
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 4.0e-90 335.5 233 73.8
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 3.4e-89 332.4 213 79.3
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 5.8e-89 331.6 286 64.0
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 1.3e-88 330.5 228 73.7
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 2.2e-88 329.7 227 74.9
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 2.2e-88 329.7 240 69.6
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 2.9e-88 329.3 211 78.7
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 2.9e-88 329.3 213 77.5
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 3.8e-88 328.9 221 76.5
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 4.9e-88 328.6 226 73.5
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 1.4e-87 327.0 240 70.8
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 1.4e-87 327.0 245 69.0
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 1.4e-87 327.0 223 74.4
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 1.4e-87 327.0 223 74.4
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 9.3e-87 324.3 245 66.9
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 2.1e-86 323.2 241 69.7
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 3.5e-86 322.4 214 75.2
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 6.0e-86 321.6 198 79.8
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 7.9e-86 321.2 268 65.7
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 2.3e-85 319.7 210 73.3
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 6.7e-85 318.2 215 72.6
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.5e-81 307.0 211 75.4
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 3.4e-81 305.8 222 69.4
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 5.8e-81 305.1 213 70.4
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 1.3e-80 303.9 245 67.3
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 6.4e-80 301.6 216 70.8
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 1.9e-79 300.1 180 82.2
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 3.2e-79 299.3 322 53.7
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 9.3e-79 297.7 198 77.3
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 9.3e-79 297.7 229 69.4
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 1.6e-78 297.0 186 77.4
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 1.6e-78 297.0 204 75.0
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 1.3e-77 293.9 286 62.9
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 8.7e-77 291.2 186 75.8
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 2.4e-74 283.1 208 67.8
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 6.9e-74 281.6 250 63.2
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 1.2e-73 280.8 190 73.7
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 1.3e-72 277.3 188 72.3
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 2.5e-71 273.1 202 68.3
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 1.8e-69 266.9 275 54.5
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 5.1e-69 265.4 209 62.7
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 1.5e-68 263.8 234 62.8
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 9.7e-68 261.2 189 72.5
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 2.2e-67 260.0 163 81.0
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 2.0e-65 253.4 340 50.6
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 8.2e-59 231.5 284 49.3
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 3.1e-58 229.6 273 52.7
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 2.2e-56 223.4 243 58.0
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 3.5e-49 199.5 121 78.5
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 6.5e-48 195.3 226 47.8
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 7.2e-47 191.8 97 97.9
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 9.4e-47 191.4 132 74.2
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 4.7e-46 189.1 97 96.9
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 6.1e-46 188.7 228 47.4
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 1.8e-42 177.2 215 46.5
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 7.0e-42 175.3 160 60.0
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 2.0e-41 173.7 121 75.2
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 2.2e-32 143.7 113 68.1
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 7.2e-31 138.7 180 53.9
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 6.1e-30 135.6 80 81.2
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 5.2e-29 132.5 78 80.8
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 2.0e-28 130.6 78 82.1
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 4.8e-27 125.9 76 77.6
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 1.7e-19 100.9 50 98.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 2.2e-19 100.5 51 96.1
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 3.9e-16 89.7 61 72.1
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 1.1e-15 88.2 78 65.4
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 8.0e-14 82.0 53 77.4
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 4.4e-12 76.3 48 72.9
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 1.6e-09 67.8 55 60.0
unitig_0.g10 Utricularia gibba HOM05D006042 ORTHO05D007658 3.5e-09 66.6 112 37.5
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 3.9e-08 63.2 47 61.7
Cpa.g.sc179.24 Carica papaya HOM05D006042 ORTHO05D007658 7.3e-07 58.9 41 65.9


User provided reference genes

Program Settings