Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 2.3e-280 968.4 528 100.0
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 1.9e-279 965.3 528 99.6
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 4.6e-273 944.1 528 97.9
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 6.4e-251 870.5 534 88.6
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 2.5e-239 832.0 487 93.4
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 2.5e-239 832.0 487 93.4
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 3.4e-220 768.5 495 82.4
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 1.4e-200 703.4 549 77.6
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 6.3e-198 694.5 554 74.9
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 2.9e-195 685.6 549 75.4
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 7.4e-191 671.0 549 72.7
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 1.7e-179 633.3 491 73.7
Aa31LG9G16990 Aethionema arabicum HOM05D002617 ORTHO05D006076 6.3e-166 588.2 560 63.4
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 1.2e-140 504.2 529 56.5
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 8.6e-139 498.0 553 54.8
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 1.2e-129 467.6 429 59.9
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 8.1e-129 464.9 417 61.9
A02p14070 Brassica napus HOM05D002617 ORTHO05D006076 1.8e-128 463.8 445 58.9
BcaB05g24247 Brassica carinata HOM05D002617 ORTHO05D006076 1.2e-127 461.1 440 59.1
BcaC03g14816 Brassica carinata HOM05D002617 ORTHO05D006076 2.2e-126 456.8 448 57.8
C02p22680 Brassica napus HOM05D002617 ORTHO05D006076 2.2e-126 456.8 449 57.7
BolC2t08421H Brassica oleracea HOM05D002617 ORTHO05D006076 2.2e-126 456.8 448 57.8
Sp5g22140 Schrenkiella parvula HOM05D002617 ORTHO05D006076 2.2e-126 456.8 412 61.2
BraA02t06470Z Brassica rapa HOM05D002617 ORTHO05D006076 6.4e-126 455.3 450 57.6
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 3.9e-123 446.0 429 60.1
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 2.5e-122 443.4 418 58.4
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 3.8e-118 429.5 464 54.7
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 1.3e-115 421.0 348 65.8
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 1.0e-107 394.8 419 54.4
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 1.0e-107 394.8 482 49.8
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 1.5e-106 391.0 521 47.0
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 1.9e-106 390.6 484 48.8
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 9.6e-106 388.3 559 45.8
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 1.6e-105 387.5 389 55.5
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 3.7e-105 386.3 395 55.2
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 6.2e-105 385.6 487 48.9
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 1.8e-104 384.0 512 47.7
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 3.1e-104 383.3 544 45.8
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 9.0e-104 381.7 488 49.0
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 2.6e-103 380.2 431 52.4
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 1.7e-102 377.5 509 47.0
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 2.2e-102 377.1 388 53.9
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 6.5e-102 375.6 389 56.3
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 1.1e-101 374.8 388 55.7
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 1.4e-101 374.4 443 51.5
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 4.2e-101 372.9 442 50.7
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 1.6e-100 370.9 396 53.3
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 2.7e-100 370.2 415 53.5
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 2.7e-100 370.2 393 52.7
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 7.9e-100 368.6 390 55.4
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 7.9e-100 368.6 390 55.4
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 1.0e-99 368.2 479 48.0
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 3.0e-99 366.7 455 48.6
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 5.1e-99 365.9 513 47.8
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 6.7e-99 365.5 441 47.2
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 1.1e-98 364.8 408 52.2
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.5e-98 364.4 477 47.8
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 1.5e-98 364.4 499 45.5
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 1.9e-98 364.0 428 49.5
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 9.7e-98 361.7 531 45.0
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 1.6e-97 360.9 530 44.3
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 4.8e-97 359.4 392 51.8
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 6.3e-97 359.0 505 46.3
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 1.1e-96 358.2 388 52.8
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 1.4e-96 357.8 488 45.5
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 2.4e-96 357.1 390 52.6
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 2.4e-96 357.1 484 44.2
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 5.3e-96 355.9 414 48.3
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 9.0e-96 355.1 408 52.2
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 1.5e-95 354.4 385 52.5
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 2.0e-95 354.0 480 46.9
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 4.5e-95 352.8 374 54.0
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 4.5e-95 352.8 393 49.4
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 5.9e-95 352.4 410 52.4
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 1.0e-94 351.7 432 48.4
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 1.3e-94 351.3 390 50.0
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 1.7e-94 350.9 494 45.5
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 3.8e-94 349.7 395 51.4
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 6.5e-94 349.0 496 44.6
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 6.5e-94 349.0 503 45.3
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 1.1e-93 348.2 397 48.9
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 1.9e-93 347.4 408 52.2
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 3.2e-93 346.7 386 52.6
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 4.2e-93 346.3 464 49.4
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 2.7e-92 343.6 493 45.0
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 3.6e-92 343.2 395 51.1
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 4.6e-92 342.8 502 43.4
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 7.9e-92 342.0 395 51.1
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 1.0e-91 341.7 478 45.4
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 1.4e-91 341.3 635 40.0
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 1.4e-91 341.3 438 47.0
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.8e-91 340.9 388 49.5
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 7.4e-90 335.5 484 45.7
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 2.2e-89 334.0 334 53.0
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.8e-89 333.6 399 50.6
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 2.8e-89 333.6 455 47.3
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 3.7e-89 333.2 397 47.9
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 1.4e-88 331.3 512 43.9
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 2.4e-88 330.5 418 49.3
HPP92_011591 Vanilla planifolia HOM05D002617 ORTHO05D006076 3.1e-88 330.1 383 48.3
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 9.1e-88 328.6 443 44.9
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 9.1e-88 328.6 456 45.0
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 1.0e-86 325.1 488 43.2
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 1.4e-85 321.2 374 51.9
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 1.6e-84 317.8 482 44.2
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 1.6e-84 317.8 419 46.8
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 2.7e-84 317.0 522 41.4
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 3.0e-83 313.5 341 51.9
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 3.3e-82 310.1 395 45.3
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 5.7e-82 309.3 380 46.1
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 2.4e-80 303.9 401 44.6
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 5.3e-80 302.8 491 42.2
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 2.6e-79 300.4 500 41.0
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 1.1e-77 295.0 515 38.4
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 2.1e-76 290.8 435 41.4
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 1.4e-75 288.1 471 40.3
FAN05G1346 Fragaria x ananassa HOM05D002617 ORTHO05D006076 6.3e-73 279.3 322 49.1
Hund05776 Selenicereus undatus HOM05D002617 ORTHO05D006076 5.3e-72 276.2 432 41.7
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 2.0e-71 274.2 363 44.9
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 5.9e-71 272.7 426 40.8
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.1e-69 268.5 410 42.4
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 1.2e-68 265.0 362 44.5
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 8.0e-68 262.3 344 46.5
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 4.0e-67 260.0 391 42.7
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 1.5e-66 258.1 433 38.8
FAN09G0965 Fragaria x ananassa HOM05D002617 ORTHO05D006076 4.5e-63 246.5 230 55.7
CDE03G0434 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 9.4e-61 238.8 291 51.2
Actinidia29638 Actinidia chinensis HOM05D002617 ORTHO05D006076 6.1e-60 236.1 219 55.3
Actinidia13004 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.4e-56 224.9 285 46.0
SMO005G0008 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 1.8e-56 224.6 299 46.2
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 2.7e-55 220.7 287 44.9
Mapoly0126s0021 Marchantia polymorpha HOM05D002617 ORTHO05D006076 2.7e-55 220.7 411 36.3
CSS0005448 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 1.7e-54 218.0 240 51.2
CSS0031641 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 1.2e-52 211.8 234 51.3
SMO197G0066 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 1.2e-44 185.3 277 42.2
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 1.6e-44 184.9 167 56.3
Lj3A1022T61 Lonicera japonica HOM05D002617 ORTHO05D006076 1.0e-43 182.2 156 62.8
CBR_g21963 Chara braunii HOM05D002617 ORTHO05D006076 1.7e-38 164.9 475 31.2
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 1.5e-29 135.2 391 30.4
SGA_v2.0_scaffold150G36614 Striga asiatica HOM05D002617 ORTHO05D006076 1.2e-28 132.1 509 29.1
AagrBONN_evm.TU.Sc2ySwM_344.4970 Anthoceros agrestis HOM05D002617 ORTHO05D006076 1.1e-27 129.0 208 38.0
Nn8g40574 Nelumbo nucifera HOM05D002617 ORTHO05D006076 6.4e-25 119.8 118 48.3
Dinv33922 Davidia involucrata HOM05D002617 ORTHO05D006076 1.3e-22 112.1 175 49.1
Pp3c8_12390 Physcomitrium patens HOM05D002617 ORTHO05D006076 5.1e-22 110.2 389 27.5
Glyma.19G043901 Glycine max HOM05D002617 ORTHO05D006076 4.3e-21 107.1 191 42.4
CDE04G2372 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 2.2e-17 94.7 109 40.4
PGSC0003DMG400003361 Solanum tuberosum HOM05D002617 ORTHO05D006076 2.2e-17 94.7 164 42.1
SalBow1G4795 Salvia bowleyana HOM05D002617 ORTHO05D006076 2.9e-17 94.4 217 37.3
CSS0013506 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 4.9e-09 67.0 196 30.1
Lsat_1_v5_gn_8_136421 Lactuca sativa HOM05D002617 ORTHO05D048373 2.3e-06 58.2 74 47.3


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