Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37008H Brassica oleracea HOM05D003714 ORTHO05D004379 2.8e-48 194.9 96 100.0
C06p18020 Brassica napus HOM05D003714 ORTHO05D004379 1.1e-47 193.0 96 97.9
BcaC02g10354 Brassica carinata HOM05D003714 ORTHO05D004379 1.2e-46 189.5 96 95.8
BcaC08g44367 Brassica carinata HOM05D003714 ORTHO05D004379 2.0e-46 188.7 96 96.9
BcaC07g41150 Brassica carinata HOM05D003714 ORTHO05D004379 2.5e-44 181.8 96 93.8
C08p41470 Brassica napus HOM05D003714 ORTHO05D004379 2.5e-44 181.8 96 93.8
BolC8t51708H Brassica oleracea HOM05D003714 ORTHO05D004379 2.5e-44 181.8 96 93.8
BcaB05g22662 Brassica carinata HOM05D003714 ORTHO05D004379 1.6e-43 179.1 97 91.8
BcaC03g13945 Brassica carinata HOM05D003714 ORTHO05D004379 1.0e-42 176.4 97 90.7
C02p11520 Brassica napus HOM05D003714 ORTHO05D004379 1.0e-42 176.4 97 90.7
BolC2t07227H Brassica oleracea HOM05D003714 ORTHO05D004379 1.0e-42 176.4 97 90.7
BraA02t05710Z Brassica rapa HOM05D003714 ORTHO05D004379 1.0e-42 176.4 97 90.7
AL8G37290 Arabidopsis lyrata HOM05D003714 ORTHO05D004379 2.3e-42 175.3 97 89.7
AT5G60700 Arabidopsis thaliana HOM05D003714 ORTHO05D004379 2.3e-42 175.3 97 89.7
Carub.0008s2138 Capsella rubella HOM05D003714 ORTHO05D004379 2.3e-42 175.3 97 89.7
BcaC04g19732 Brassica carinata HOM05D003714 ORTHO05D004379 3.0e-42 174.9 97 89.7
A10p17940 Brassica napus HOM05D003714 ORTHO05D004379 3.0e-42 174.9 97 89.7
C09p53430 Brassica napus HOM05D003714 ORTHO05D004379 3.0e-42 174.9 97 89.7
BolC9t58217H Brassica oleracea HOM05D003714 ORTHO05D004379 3.0e-42 174.9 97 89.7
BraA08t33776Z Brassica rapa HOM05D003714 ORTHO05D004379 4.0e-42 174.5 96 89.6
BraA10t43869Z Brassica rapa HOM05D003714 ORTHO05D004379 4.0e-42 174.5 97 88.7
BcaB08g36372 Brassica carinata HOM05D003714 ORTHO05D004379 6.8e-42 173.7 97 88.7
BcaC04g20013 Brassica carinata HOM05D003714 ORTHO05D004379 6.8e-42 173.7 96 88.5
C03p42240 Brassica napus HOM05D003714 ORTHO05D004379 1.5e-41 172.6 90 93.3
Thhalv10012601m.g Eutrema salsugineum HOM05D003714 ORTHO05D004379 1.5e-41 172.6 97 87.6
Aa31LG1G12660 Aethionema arabicum HOM05D003714 ORTHO05D004379 5.7e-41 170.6 97 87.6
Sp6g22270 Schrenkiella parvula HOM05D003714 ORTHO05D004379 7.5e-41 170.2 97 85.6
CARHR274380 Cardamine hirsuta HOM05D003714 ORTHO05D004379 2.2e-40 168.7 97 85.6
C09p48800 Brassica napus HOM05D000129 ORTHO05D000144 3.5e-38 161.4 89 88.8
BolC9t57727H Brassica oleracea HOM05D000129 ORTHO05D000144 3.5e-38 161.4 89 88.8
Ca_20855_v3 Cicer arietinum L. HOM05D003714 ORTHO05D004379 5.6e-36 154.1 97 77.3
Manes.04G019400 Manihot esculenta HOM05D003714 ORTHO05D004379 1.6e-35 152.5 97 76.3
THA.LOC104810862 Tarenaya hassleriana HOM05D003714 ORTHO05D004379 2.1e-35 152.1 97 76.3
Lalb_Chr03g0027461 Lupinus albus HOM05D003714 ORTHO05D004379 3.6e-35 151.4 97 74.2
Manes.11G147100 Manihot esculenta HOM05D003714 ORTHO05D004379 3.6e-35 151.4 97 75.3
CANSAT54G2133 Cannabis sativa HOM05D003714 ORTHO05D004379 6.1e-35 150.6 97 75.3
Lalb_Chr01g0004371 Lupinus albus HOM05D003714 ORTHO05D004379 1.0e-34 149.8 97 74.2
TPR.G6161 Trifolium pratense HOM05D003714 ORTHO05D004379 1.4e-34 149.4 97 74.2
QL01p021761 Quercus lobata HOM05D003714 ORTHO05D004379 1.8e-34 149.1 96 78.1
FvH4_3g31890 Fragaria vesca HOM05D003714 ORTHO05D004379 2.3e-34 148.7 97 74.2
FAN11G3344 Fragaria x ananassa HOM05D003714 ORTHO05D004379 2.3e-34 148.7 97 74.2
FAN21G0199 Fragaria x ananassa HOM05D003714 ORTHO05D004379 2.3e-34 148.7 97 74.2
RcHm_v2.0_Chr5g0058661 Rosa chinensis HOM05D003714 ORTHO05D004379 2.3e-34 148.7 97 74.2
MD11G1138800 Malus domestica HOM05D003714 ORTHO05D004379 5.2e-34 147.5 97 74.2
Medtr4g058760 Medicago truncatula HOM05D003714 ORTHO05D004379 5.2e-34 147.5 97 74.2
Sabra04G0143400 Salix brachista HOM05D003714 ORTHO05D004379 6.8e-34 147.1 97 73.2
Aqoxy1G01219 Aquilegia oxysepala HOM05D003714 ORTHO05D004379 8.9e-34 146.7 97 71.1
FAN25G0709 Fragaria x ananassa HOM05D003714 ORTHO05D004379 8.9e-34 146.7 97 73.2
Potri.009G010900 Populus trichocarpa HOM05D003714 ORTHO05D004379 8.9e-34 146.7 97 73.2
MD03G1120400 Malus domestica HOM05D003714 ORTHO05D004379 1.2e-33 146.4 97 73.2
FAN16G2552 Fragaria x ananassa HOM05D003714 ORTHO05D004379 1.5e-33 146.0 97 73.2
Lj3g0004216 Lotus japonicus HOM05D003714 ORTHO05D004379 1.5e-33 146.0 97 73.2
arahy.Tifrunner.gnm1.ann1.8QPZ90 Arachis hypogaea HOM05D003714 ORTHO05D004379 2.6e-33 145.2 97 72.2
Prupe.6G103800 Prunus persica HOM05D003714 ORTHO05D004379 3.4e-33 144.8 97 72.2
TWI79G0067 Tripterygium wilfordii HOM05D003714 ORTHO05D004379 3.4e-33 144.8 97 73.2
Phvul.011G080500 Phaseolus vulgaris HOM05D003714 ORTHO05D004379 4.4e-33 144.4 97 73.2
Psat7g144800 Pisum sativum HOM05D003714 ORTHO05D004379 4.4e-33 144.4 97 72.2
Ciclev10030090m.g Citrus clementina HOM05D003714 ORTHO05D004379 5.8e-33 144.1 97 72.2
Eucgr.B02513 Eucalyptus grandis HOM05D003714 ORTHO05D004379 5.8e-33 144.1 97 73.2
Nitab4.5_0010325g0010 Nicotiana tabacum HOM05D003714 ORTHO05D004379 5.8e-33 144.1 97 73.2
Glyma.11G145200 Glycine max HOM05D003714 ORTHO05D004379 7.5e-33 143.7 97 71.1
Sabra09G0006800 Salix brachista HOM05D003714 ORTHO05D004379 7.5e-33 143.7 97 72.2
Solyc06g075100.3 Solanum lycopersicum HOM05D003714 ORTHO05D004379 9.8e-33 143.3 97 72.2
VMungo1127G1929 Vigna mungo HOM05D003714 ORTHO05D004379 1.3e-32 142.9 97 72.2
Gohir.A03G032400 Gossypium hirsutum HOM05D003714 ORTHO05D004379 1.7e-32 142.5 95 72.6
Sopen06g031520 Solanum pennellii HOM05D003714 ORTHO05D004379 2.2e-32 142.1 97 72.2
CiPaw.13G115700 Carya illinoinensis HOM05D003714 ORTHO05D004379 2.9e-32 141.7 97 74.2
ClCG01G013560 Citrullus lanatus HOM05D003714 ORTHO05D004379 2.9e-32 141.7 97 74.2
TAR633G1536 Trochodendron aralioides HOM05D003714 ORTHO05D004379 2.9e-32 141.7 97 70.1
GSVIVG01025204001 Vitis vinifera HOM05D003714 ORTHO05D004379 2.9e-32 141.7 93 74.2
Gohir.D08G216500 Gossypium hirsutum HOM05D003714 ORTHO05D004379 3.7e-32 141.4 96 71.9
Gorai.004G230400 Gossypium raimondii HOM05D003714 ORTHO05D004379 3.7e-32 141.4 96 71.9
Potri.004G212000 Populus trichocarpa HOM05D003714 ORTHO05D004379 3.7e-32 141.4 97 72.2
Atru.chr3.3608 Acer truncatum HOM05D003714 ORTHO05D004379 4.9e-32 141.0 97 71.1
COL.COLO4_18316 Corchorus olitorius HOM05D003714 ORTHO05D004379 4.9e-32 141.0 96 70.8
Migut.N02587 Erythranthe guttata HOM05D003714 ORTHO05D004379 4.9e-32 141.0 97 72.2
Glyma.12G076600 Glycine max HOM05D003714 ORTHO05D004379 4.9e-32 141.0 97 70.1
Gohir.D05G104100 Gossypium hirsutum HOM05D003714 ORTHO05D004379 4.9e-32 141.0 96 71.9
Gorai.009G108300 Gossypium raimondii HOM05D003714 ORTHO05D004379 4.9e-32 141.0 96 71.9
Haze_23797 Corylus avellana HOM05D003714 ORTHO05D004379 8.3e-32 140.2 97 70.1
Gohir.D03G136000 Gossypium hirsutum HOM05D003714 ORTHO05D004379 8.3e-32 140.2 95 71.6
Gorai.003G143100 Gossypium raimondii HOM05D003714 ORTHO05D004379 8.3e-32 140.2 95 71.6
Duzib168G1405 Durio zibethinus HOM05D003714 ORTHO05D004379 1.1e-31 139.8 96 71.9
MELO3C004898.2 Cucumis melo HOM05D003714 ORTHO05D004379 1.4e-31 139.4 97 73.2
Duzib150G0819 Durio zibethinus HOM05D003714 ORTHO05D004379 1.4e-31 139.4 96 71.9
Lj3g0001899 Lotus japonicus HOM05D003714 ORTHO05D004379 2.4e-31 138.7 97 70.1
CAN.G1966.3 Capsicum annuum HOM05D003714 ORTHO05D004379 3.2e-31 138.3 97 68.0
Gohir.A08G199100 Gossypium hirsutum HOM05D003714 ORTHO05D004379 3.2e-31 138.3 96 69.8
Peaxi162Scf00029g01511 Petunia axillaris HOM05D003714 ORTHO05D004379 4.1e-31 137.9 97 70.1
Haze_23798 Corylus avellana HOM05D003714 ORTHO05D004379 5.4e-31 137.5 97 69.1
CsaV3_1G013950 Cucumis sativus L. HOM05D003714 ORTHO05D004379 7.0e-31 137.1 97 72.2
PGR102G2693 Punica granatum HOM05D003714 ORTHO05D004379 7.0e-31 137.1 97 71.1
Lj2C1024T6 Lonicera japonica HOM05D003714 ORTHO05D004379 1.2e-30 136.3 97 71.1
Thecc.09G342900 Theobroma cacao HOM05D003714 ORTHO05D004379 1.2e-30 136.3 96 69.8
Gohir.A05G104300 Gossypium hirsutum HOM05D003714 ORTHO05D004379 1.6e-30 136.0 96 70.8
Nitab4.5_0000106g0250 Nicotiana tabacum HOM05D003714 ORTHO05D004379 1.6e-30 136.0 97 70.1
Nitab4.5_0001939g0040 Nicotiana tabacum HOM05D003714 ORTHO05D004379 2.7e-30 135.2 97 69.1
Cc01_g10960 Coffea canephora HOM05D003714 ORTHO05D004379 3.5e-30 134.8 97 69.1
PSO339G1383 Papaver somniferum HOM05D003714 ORTHO05D004379 6.0e-30 134.0 97 64.9
PSO384G2520 Papaver somniferum HOM05D003714 ORTHO05D004379 6.0e-30 134.0 97 64.9
TWI75G0420 Tripterygium wilfordii HOM05D003714 ORTHO05D004379 1.0e-29 133.3 97 69.1
CAN.G631.39 Capsicum annuum HOM05D003714 ORTHO05D004379 1.3e-29 132.9 97 68.0
Nn2g10822 Nelumbo nucifera HOM05D003714 ORTHO05D004379 1.7e-29 132.5 97 66.0
Peaxi162Scf00270g00113 Petunia axillaris HOM05D003714 ORTHO05D004379 2.3e-29 132.1 97 67.0
SalBow3G2648 Salvia bowleyana HOM05D003714 ORTHO05D004379 2.3e-29 132.1 97 68.0
Sopen11g028270 Solanum pennellii HOM05D003714 ORTHO05D004379 2.3e-29 132.1 97 68.0
HanXRQChr14g0452661 Helianthus annuus HOM05D003714 ORTHO05D004379 3.0e-29 131.7 97 67.0
Rhsim01G0215800 Rhododendron simsii HOM05D003714 ORTHO05D004379 3.9e-29 131.3 97 69.1
ECA238G0686 Erigeron canadensis HOM05D003714 ORTHO05D004379 5.0e-29 131.0 97 66.0
Hma1.2p1_0307F.1_g119810 Hydrangea macrophylla HOM05D003714 ORTHO05D004379 6.6e-29 130.6 97 68.0
Lsat_1_v5_gn_2_100500 Lactuca sativa HOM05D003714 ORTHO05D004379 6.6e-29 130.6 97 67.0
AUR62022789 Chenopodium quinoa HOM05D003714 ORTHO05D004379 8.6e-29 130.2 97 69.1
Sed0011730 Sechium edule HOM05D003714 ORTHO05D004379 8.6e-29 130.2 97 67.0
vmacro03207 Vaccinium macrocarpon HOM05D003714 ORTHO05D004379 8.6e-29 130.2 97 70.1
Ah.01g003010 Amaranthus hybridus HOM05D003714 ORTHO05D004379 1.9e-28 129.0 97 68.0
Lj1A202T36 Lonicera japonica HOM05D003714 ORTHO05D004379 1.9e-28 129.0 97 66.0
Solyc11g069560.2 Solanum lycopersicum HOM05D003714 ORTHO05D004379 1.9e-28 129.0 97 67.0
AUR62042199 Chenopodium quinoa HOM05D003714 ORTHO05D004379 2.5e-28 128.6 97 69.1
DCAR_022764 Daucus carota HOM05D003714 ORTHO05D004379 2.5e-28 128.6 97 68.0
Actinidia03720 Actinidia chinensis HOM05D003714 ORTHO05D004379 5.6e-28 127.5 97 67.0
MSTRG.18670 Avicennia marina HOM05D003714 ORTHO05D004379 5.6e-28 127.5 96 65.6
Sc15g0001490 Simmondsia chinensis HOM05D003714 ORTHO05D004379 5.6e-28 127.5 97 66.0
SGA_v2.0_scaffold180G39648 Striga asiatica HOM05D003714 ORTHO05D004379 5.6e-28 127.5 97 68.0
Rhsim13G0095500 Rhododendron simsii HOM05D003714 ORTHO05D004379 7.3e-28 127.1 97 67.0
CDE04G3105 Ceratophyllum demersum HOM05D003714 ORTHO05D004379 9.5e-28 126.7 97 64.9
unitig_27.g25054 Utricularia gibba HOM05D003714 ORTHO05D004379 9.5e-28 126.7 97 66.0
EL10Ac9g22541 Beta vulgaris HOM05D003714 ORTHO05D004379 1.2e-27 126.3 96 66.7
MBI07_g42224_MAGBIO Magnolia biondii HOM05D003714 ORTHO05D004379 1.6e-27 125.9 97 68.0
CSS0039471 Camellia sinensis var. sinensis HOM05D003714 ORTHO05D004379 2.8e-27 125.2 97 67.0
CSS0046644 Camellia sinensis var. sinensis HOM05D003714 ORTHO05D004379 2.8e-27 125.2 97 67.0
Actinidia07147 Actinidia chinensis HOM05D003714 ORTHO05D004379 6.2e-27 124.0 97 67.0
Migut.D02239 Erythranthe guttata HOM05D003714 ORTHO05D004379 1.1e-26 123.2 97 66.0
MBI10_g19605_MAGBIO Magnolia biondii HOM05D003714 ORTHO05D004379 1.4e-26 122.9 97 67.0
SGA_v2.0_scaffold116G32255 Striga asiatica HOM05D003714 ORTHO05D004379 2.3e-26 122.1 97 66.0
unitig_8.g3299 Utricularia gibba HOM05D003714 ORTHO05D004379 2.3e-26 122.1 97 63.9
BcaC06g36081 Brassica carinata HOM05D003714 ORTHO05D004379 6.8e-26 120.6 73 83.6
C07p08060 Brassica napus HOM05D003714 ORTHO05D004379 6.8e-26 120.6 73 83.6
BolC7t41224H Brassica oleracea HOM05D003714 ORTHO05D004379 6.8e-26 120.6 73 83.6
PSO339G1676 Papaver somniferum HOM05D003714 ORTHO05D004379 8.9e-26 120.2 97 63.9
HPP92_013379 Vanilla planifolia HOM05D003714 ORTHO05D004379 8.9e-26 120.2 97 61.9
vmacro14427 Vaccinium macrocarpon HOM05D003714 ORTHO05D004379 1.2e-25 119.8 97 63.9
PSO063G6987 Papaver somniferum HOM05D003714 ORTHO05D004379 1.5e-25 119.4 97 62.9
CDE03G0469 Ceratophyllum demersum HOM05D003714 ORTHO05D004379 2.0e-25 119.0 97 60.8
DCAR_018798 Daucus carota HOM05D003714 ORTHO05D004379 3.4e-25 118.2 93 63.4
SEGI_02314 Sequoiadendron giganteum HOM05D003714 ORTHO05D004379 3.7e-24 114.8 97 61.9
SEGI_21871 Sequoiadendron giganteum HOM05D003714 ORTHO05D004379 3.7e-24 114.8 97 61.9
CDE07G1448 Ceratophyllum demersum HOM05D003714 ORTHO05D004379 8.3e-24 113.6 97 60.8
Oeu001285.1 Olea europaea HOM05D003714 ORTHO05D004379 1.4e-23 112.8 92 65.2
Pp3c3_5960 Physcomitrium patens HOM05D003714 ORTHO05D004379 1.9e-23 112.5 97 59.8
HPP92_025357 Vanilla planifolia HOM05D003714 ORTHO05D004379 3.2e-23 111.7 97 58.8
Zm00001eb258310 Zea mays HOM05D003714 ORTHO05D004379 4.1e-23 111.3 97 60.8
ATR0048G003 Amborella trichopoda HOM05D003714 ORTHO05D004379 7.1e-23 110.5 96 59.4
Os02g0806500 Oryza sativa ssp. japonica HOM05D003714 ORTHO05D004379 3.5e-22 108.2 97 58.8
Mapoly0151s0026 Marchantia polymorpha HOM05D003714 ORTHO05D004379 6.0e-22 107.5 97 56.7
unitig_8.g3004 Utricularia gibba HOM05D003714 ORTHO05D004379 6.0e-22 107.5 97 57.7
SMO165G0075 Selaginella moellendorffii HOM05D003714 ORTHO05D004379 3.9e-21 104.8 97 56.7
SEGI_28974 Sequoiadendron giganteum HOM05D003714 ORTHO05D004379 3.9e-21 104.8 97 54.6
SEGI_03824 Sequoiadendron giganteum HOM05D003714 ORTHO05D004379 1.1e-20 103.2 95 54.7
SMO118G0436 Selaginella moellendorffii HOM05D003714 ORTHO05D004379 5.6e-20 100.9 97 54.6
Pp3c3_14800 Physcomitrium patens HOM05D003714 ORTHO05D004379 1.2e-19 99.8 93 55.9
Pp3c4_16750 Physcomitrium patens HOM05D003714 ORTHO05D004379 4.7e-19 97.8 97 54.6
AagrBONN_evm.TU.Sc2ySwM_117.2800 Anthoceros agrestis HOM05D003714 ORTHO05D004379 1.6e-14 82.8 97 48.5
AagrBONN_evm.TU.Sc2ySwM_368.1662 Anthoceros agrestis HOM05D003714 ORTHO05D004379 1.7e-13 79.3 97 45.4
Actinidia24112 Actinidia chinensis HOM05D000450 ORTHO05D000327 3.3e-12 75.1 76 53.9
Dinv32729 Davidia involucrata HOM05D003714 ORTHO05D004379 3.2e-07 58.5 68 47.1


User provided reference genes

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