Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 0.0e+00 1215.3 636 100.0
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 0.0e+00 1164.1 661 94.1
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 0.0e+00 1156.4 623 97.6
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 2.5e-310 1068.1 638 91.4
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 4.8e-309 1063.9 638 90.8
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 3.2e-281 971.5 662 82.0
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 2.0e-246 855.9 683 70.9
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 1.4e-191 673.7 706 57.2
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 1.5e-185 653.7 713 56.5
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 6.4e-181 638.3 700 55.4
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 2.2e-173 613.2 687 54.4
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 1.5e-166 590.5 577 57.9
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 1.6e-163 580.5 665 54.9
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 1.7e-144 517.3 698 47.3
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 2.9e-112 410.2 704 39.2
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 5.2e-106 389.4 674 40.9
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 4.4e-105 386.3 721 38.8
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 1.4e-103 381.3 687 36.7
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 1.0e-101 375.2 673 38.0
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 4.0e-98 363.2 658 38.0
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 2.6e-97 360.5 694 37.5
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 7.5e-97 359.0 680 37.8
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 9.8e-97 358.6 705 37.3
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 1.1e-95 355.1 656 37.7
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 4.1e-95 353.2 661 37.1
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 9.2e-95 352.1 701 36.1
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 4.6e-94 349.7 643 37.0
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 6.0e-94 349.4 704 36.9
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 7.8e-94 349.0 717 36.5
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.0e-93 348.6 644 38.4
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 2.3e-93 347.4 648 38.0
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 8.6e-93 345.5 643 36.7
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 9.5e-92 342.0 673 35.8
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 2.3e-90 337.4 663 36.7
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 5.2e-90 336.3 699 34.9
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 4.4e-89 333.2 658 36.8
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 7.6e-89 332.4 682 35.6
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 1.9e-87 327.8 662 36.1
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 3.2e-87 327.0 665 36.5
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 1.2e-86 325.1 660 36.1
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 4.6e-86 323.2 648 36.7
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 6.0e-86 322.8 659 34.6
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 3.0e-85 320.5 688 35.2
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 6.6e-85 319.3 654 35.9
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 1.9e-84 317.8 665 36.1
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.9e-84 317.8 669 35.7
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 9.0e-82 308.9 621 36.2
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 4.4e-81 306.6 639 36.0
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 4.9e-80 303.1 686 34.1
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 1.6e-78 298.1 452 41.8
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 1.0e-77 295.4 695 34.1
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 5.1e-77 293.1 667 35.2
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 5.1e-77 293.1 590 34.1
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 1.1e-76 292.0 658 34.2
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 3.3e-76 290.4 659 34.9
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 1.6e-75 288.1 704 33.1
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 4.8e-75 286.6 648 34.3
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 1.4e-74 285.0 641 34.3
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 1.8e-74 284.6 737 32.4
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 1.2e-73 282.0 699 33.3
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 8.4e-72 275.8 422 40.0
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 2.4e-71 274.2 648 33.6
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 5.4e-71 273.1 688 33.7
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 6.0e-70 269.6 678 32.7
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 6.0e-70 269.6 678 32.7
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 3.9e-69 266.9 711 31.6
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 1.1e-68 265.4 660 32.4
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 1.1e-68 265.4 696 32.3
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 1.5e-68 265.0 703 31.9
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 2.5e-68 264.2 658 31.9
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 2.5e-68 264.2 671 32.6
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 6.9e-66 256.1 459 39.0
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 4.9e-64 250.0 523 35.9
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 6.4e-64 249.6 523 35.9
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 1.9e-63 248.1 718 30.5
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 1.2e-62 245.4 720 30.7
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 1.6e-62 245.0 598 34.3
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 4.6e-62 243.4 591 34.2
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 2.3e-61 241.1 587 32.4
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 4.8e-59 233.4 666 30.0
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 2.4e-58 231.1 520 33.1
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 6.9e-58 229.6 435 36.8
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 4.5e-57 226.9 646 30.8
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 4.2e-55 220.3 635 29.6
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 5.5e-55 219.9 652 29.3
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 9.3e-55 219.2 716 29.5
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.2e-54 218.8 537 33.5
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 1.5e-52 211.8 627 30.9
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 1.9e-52 211.5 690 27.7
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 2.5e-52 211.1 642 29.3
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 3.7e-51 207.2 652 29.9
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 5.3e-50 203.4 619 32.3
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 2.6e-49 201.1 651 29.0
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 2.6e-49 201.1 507 30.8
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 4.2e-47 193.7 689 28.2
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 1.2e-46 192.2 295 42.4
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 3.7e-43 180.6 643 27.1
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 3.8e-40 170.6 315 40.3
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 1.9e-39 168.3 644 28.9
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 2.6e-33 147.9 342 35.4
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 3.4e-33 147.5 311 35.7
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 7.7e-33 146.4 294 35.0
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 6.5e-32 143.3 516 29.3
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 7.2e-31 139.8 628 27.2
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 1.8e-29 135.2 654 24.8
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.1e-26 125.9 315 29.8
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 1.5e-23 115.5 442 26.5
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 5.5e-23 113.6 458 25.8
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 1.4e-18 99.0 407 27.3
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 2.9e-16 91.3 331 26.0
BcaC07g39321 Brassica carinata HOM05D006730 ORTHO05D008189 2.1e-14 85.1 69 69.6
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 2.8e-11 74.7 97 46.4
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 3.7e-11 74.3 153 32.7
Actinidia26680 Actinidia chinensis HOM05D006730 ORTHO05D008189 1.1e-10 72.8 85 43.5
Gohir.A02G010550 Gossypium hirsutum HOM05D006730 ORTHO05D008189 3.1e-10 71.2 99 41.4
SEGI_29361 Sequoiadendron giganteum HOM05D006730 ORTHO05D008189 1.5e-07 62.4 617 20.3


User provided reference genes

Program Settings