Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t36837H Brassica oleracea HOM05D003338 ORTHO05D042210 9.1e-69 263.5 134 100.0
C06p16360 Brassica napus HOM05D003338 ORTHO05D042210 5.5e-58 227.6 116 99.1
Thhalv10000301m.g Eutrema salsugineum HOM05D003338 ORTHO05D004042 2.2e-22 109.4 168 43.5
Sp4g01610 Schrenkiella parvula HOM05D003338 ORTHO05D004042 2.9e-22 109.0 168 44.0
AL4G12110 Arabidopsis lyrata HOM05D003338 ORTHO05D004042 9.2e-21 104.0 168 42.9
AT2G22570 Arabidopsis thaliana HOM05D003338 ORTHO05D004042 9.2e-21 104.0 168 40.5
Carub.0004s0173 Capsella rubella HOM05D003338 ORTHO05D004042 1.2e-20 103.6 168 42.9
CARHR113760 Cardamine hirsuta HOM05D003338 ORTHO05D004042 1.6e-20 103.2 168 42.9
BraA09t41133Z Brassica rapa HOM05D003338 ORTHO05D004042 5.1e-19 98.2 168 39.3
BcaC07g41048 Brassica carinata HOM05D003338 ORTHO05D004042 6.6e-19 97.8 168 39.9
C08p40500 Brassica napus HOM05D003338 ORTHO05D004042 6.6e-19 97.8 168 39.9
BolC8t51620H Brassica oleracea HOM05D003338 ORTHO05D004042 6.6e-19 97.8 168 39.9
BcaB08g35099 Brassica carinata HOM05D003338 ORTHO05D004042 8.6e-19 97.4 168 39.9
A09p57410 Brassica napus HOM05D003338 ORTHO05D004042 1.5e-18 96.7 168 38.7
Aa31LG7G14250 Aethionema arabicum HOM05D003338 ORTHO05D004042 4.7e-17 91.7 168 39.3
Lsat_1_v5_gn_2_70320 Lactuca sativa HOM05D003338 ORTHO05D004042 4.1e-13 78.6 103 43.7
ATR0767G227 Amborella trichopoda HOM05D003338 ORTHO05D004042 1.3e-11 73.6 103 42.7
MSTRG.3729 Avicennia marina HOM05D003338 ORTHO05D004042 1.3e-11 73.6 103 37.9
CiPaw.06G158100 Carya illinoinensis HOM05D003338 ORTHO05D004042 1.3e-11 73.6 103 39.8
CDE04G3172 Ceratophyllum demersum HOM05D003338 ORTHO05D004042 2.3e-11 72.8 97 45.4
Oeu031120.1 Olea europaea HOM05D003338 ORTHO05D004042 2.3e-11 72.8 129 34.1
ECA238G0630 Erigeron canadensis HOM05D003338 ORTHO05D004042 3.9e-11 72.0 103 39.8
Migut.K00801 Erythranthe guttata HOM05D003338 ORTHO05D004042 6.6e-11 71.2 103 35.9
MBI16_g27575_MAGBIO Magnolia biondii HOM05D003338 ORTHO05D004042 6.6e-11 71.2 103 38.8
HanXRQChr07g0189491 Helianthus annuus HOM05D003338 ORTHO05D004042 8.6e-11 70.9 103 38.8
SGA_v2.0_scaffold115G32124 Striga asiatica HOM05D003338 ORTHO05D004042 8.6e-11 70.9 103 38.8
Gohir.A11G207200 Gossypium hirsutum HOM05D003338 ORTHO05D004042 1.1e-10 70.5 53 62.3
Lju188A3T30 Lonicera japonica HOM05D003338 ORTHO05D004042 1.1e-10 70.5 103 36.9
Gohir.D11G216100 Gossypium hirsutum HOM05D003338 ORTHO05D004042 1.9e-10 69.7 53 62.3
Thecc.01G090100 Theobroma cacao HOM05D003338 ORTHO05D004042 1.9e-10 69.7 53 60.4
Cfa005742 Carpinus fangiana HOM05D003338 ORTHO05D004042 2.5e-10 69.3 103 36.9
Haze_10514 Corylus avellana HOM05D003338 ORTHO05D004042 2.5e-10 69.3 103 36.9
Sc03g0000360 Simmondsia chinensis HOM05D003338 ORTHO05D004042 2.5e-10 69.3 103 35.9
Aqoxy6G00863 Aquilegia oxysepala HOM05D003338 ORTHO05D004042 3.3e-10 68.9 103 37.9
Nn5g29874 Nelumbo nucifera HOM05D003338 ORTHO05D004042 3.3e-10 68.9 97 39.2
EL10Ac6g15202 Beta vulgaris HOM05D003338 ORTHO05D004042 4.3e-10 68.6 103 35.9
Cc07_g14060 Coffea canephora HOM05D003338 ORTHO05D004042 5.6e-10 68.2 103 37.9
CsaV3_6G044970 Cucumis sativus L. HOM05D003338 ORTHO05D004042 5.6e-10 68.2 168 30.4
DCAR_014182 Daucus carota HOM05D003338 ORTHO05D004042 5.6e-10 68.2 103 34.0
Gorai.007G232300 Gossypium raimondii HOM05D003338 ORTHO05D004042 5.6e-10 68.2 53 60.4
Lj2A534T37 Lonicera japonica HOM05D003338 ORTHO05D004042 5.6e-10 68.2 103 36.9
MD01G1039800 Malus domestica HOM05D003338 ORTHO05D004042 5.6e-10 68.2 103 35.9
Ciclev10026349m.g Citrus clementina HOM05D003338 ORTHO05D004042 7.3e-10 67.8 127 33.1
ATR0752G207 Amborella trichopoda HOM05D003338 ORTHO05D004042 9.6e-10 67.4 119 35.3
SalBow5G1027 Salvia bowleyana HOM05D003338 ORTHO05D004042 9.6e-10 67.4 103 37.9
SalBow5G2265 Salvia bowleyana HOM05D003338 ORTHO05D004042 9.6e-10 67.4 103 37.9
Nn1g05580 Nelumbo nucifera HOM05D003338 ORTHO05D004042 1.2e-09 67.0 103 37.9
Prupe.6G202000 Prunus persica HOM05D003338 ORTHO05D004042 1.2e-09 67.0 103 36.9
Atru.chr3.1241 Acer truncatum HOM05D003338 ORTHO05D004042 1.6e-09 66.6 103 37.9
Haze_03879 Corylus avellana HOM05D003338 ORTHO05D004042 1.6e-09 66.6 103 35.0
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 1.6e-09 66.6 103 35.0
SMO146G0114 Selaginella moellendorffii HOM05D003338 ORTHO05D004042 1.6e-09 66.6 103 39.8
Hund14084 Selenicereus undatus HOM05D003338 ORTHO05D004042 1.6e-09 66.6 129 31.8
Cfa006878 Carpinus fangiana HOM05D003338 ORTHO05D004042 2.1e-09 66.2 103 34.0
Eucgr.I02618 Eucalyptus grandis HOM05D003338 ORTHO05D004042 2.1e-09 66.2 97 38.1
MD15G1312000 Malus domestica HOM05D003338 ORTHO05D004042 2.1e-09 66.2 131 31.3
Potri.007G116100 Populus trichocarpa HOM05D003338 ORTHO05D004042 2.1e-09 66.2 103 35.0
Actinidia28822 Actinidia chinensis HOM05D003338 ORTHO05D004042 2.8e-09 65.9 103 35.9
Duzib147G0282 Durio zibethinus HOM05D003338 ORTHO05D004042 2.8e-09 65.9 127 32.3
Potri.005G147400 Populus trichocarpa HOM05D003338 ORTHO05D004042 2.8e-09 65.9 104 34.6
arahy.Tifrunner.gnm1.ann1.II5C6K Arachis hypogaea HOM05D003338 ORTHO05D004042 3.6e-09 65.5 103 34.0
arahy.Tifrunner.gnm1.ann1.NN64K4 Arachis hypogaea HOM05D003338 ORTHO05D004042 3.6e-09 65.5 103 34.0
Manes.07G041700 Manihot esculenta HOM05D003338 ORTHO05D004042 3.6e-09 65.5 103 36.9
Manes.13G100100 Manihot esculenta HOM05D003338 ORTHO05D004042 3.6e-09 65.5 103 34.0
SMO173G0077 Selaginella moellendorffii HOM05D003338 ORTHO05D004042 3.6e-09 65.5 102 40.2
TPR.G2863 Trifolium pratense HOM05D003338 ORTHO05D004042 3.6e-09 65.5 103 35.0
CSS0041719 Camellia sinensis var. sinensis HOM05D003338 ORTHO05D004042 4.7e-09 65.1 96 39.6
CiPaw.08G140500 Carya illinoinensis HOM05D003338 ORTHO05D004042 4.7e-09 65.1 103 35.0
PGSC0003DMG400016131 Solanum tuberosum HOM05D003338 ORTHO05D004042 4.7e-09 65.1 103 35.9
Actinidia24560 Actinidia chinensis HOM05D003338 ORTHO05D004042 6.2e-09 64.7 103 35.9
Ah.03g139930 Amaranthus hybridus HOM05D003338 ORTHO05D004042 6.2e-09 64.7 103 35.0
Lj4g0020285 Lotus japonicus HOM05D003338 ORTHO05D004042 6.2e-09 64.7 103 35.9
Lalb_Chr16g0392131 Lupinus albus HOM05D003338 ORTHO05D004042 6.2e-09 64.7 168 29.8
Peaxi162Scf00474g00725 Petunia axillaris HOM05D003338 ORTHO05D004042 6.2e-09 64.7 103 35.0
Sabra05G0118200 Salix brachista HOM05D003338 ORTHO05D004042 6.2e-09 64.7 104 34.6
Thecc.02G128500 Theobroma cacao HOM05D003338 ORTHO05D004042 6.2e-09 64.7 97 38.1
CAN.G1344.18 Capsicum annuum HOM05D003338 ORTHO05D004042 8.1e-09 64.3 103 35.0
CiPaw.15G141700 Carya illinoinensis HOM05D003338 ORTHO05D004042 8.1e-09 64.3 103 36.9
Dinv13598 Davidia involucrata HOM05D003338 ORTHO05D004042 8.1e-09 64.3 103 35.0
PGR031G0986 Punica granatum HOM05D003338 ORTHO05D004042 8.1e-09 64.3 103 34.0
CSS0021773 Camellia sinensis var. sinensis HOM05D003338 ORTHO05D004042 1.1e-08 63.9 103 34.0
Os02g0606800 Oryza sativa ssp. japonica HOM05D003338 ORTHO05D004042 1.1e-08 63.9 103 33.0
PSO541G2807 Papaver somniferum HOM05D003338 ORTHO05D004042 1.1e-08 63.9 103 35.9
PSO675G2379 Papaver somniferum HOM05D003338 ORTHO05D004042 1.1e-08 63.9 103 35.9
COL.COLO4_27356 Corchorus olitorius HOM05D003338 ORTHO05D004042 1.4e-08 63.5 103 35.9
Duzib095G0002 Durio zibethinus HOM05D003338 ORTHO05D004042 1.4e-08 63.5 53 58.5
Duzib264G0712 Durio zibethinus HOM05D003338 ORTHO05D004042 1.4e-08 63.5 53 58.5
Oeu002143.1 Olea europaea HOM05D003338 ORTHO05D004042 1.4e-08 63.5 129 31.0
Solyc11g010650.4 Solanum lycopersicum HOM05D003338 ORTHO05D004042 1.4e-08 63.5 103 34.0
HPP92_005586 Vanilla planifolia HOM05D003338 ORTHO05D004042 1.4e-08 63.5 103 35.9
Zm00001eb246580 Zea mays HOM05D003338 ORTHO05D004042 1.4e-08 63.5 103 32.0
Dinv36934 Davidia involucrata HOM05D003338 ORTHO05D004042 1.8e-08 63.2 103 36.9
Medtr4g093600 Medicago truncatula HOM05D003338 ORTHO05D004042 1.8e-08 63.2 103 35.9
QL11p025287 Quercus lobata HOM05D003338 ORTHO05D004042 1.8e-08 63.2 103 35.9
Sopen11g005460 Solanum pennellii HOM05D003338 ORTHO05D004042 1.8e-08 63.2 103 34.0
CSS0013733 Camellia sinensis var. sinensis HOM05D003338 ORTHO05D004042 2.4e-08 62.8 103 33.0
AUR62003666 Chenopodium quinoa HOM05D003338 ORTHO05D004042 2.4e-08 62.8 103 32.0
Mapoly0025s0028 Marchantia polymorpha HOM05D003338 ORTHO05D004042 2.4e-08 62.8 53 56.6
Prupe.6G202200 Prunus persica HOM05D003338 ORTHO05D004042 2.4e-08 62.8 90 38.9
QL06p035821 Quercus lobata HOM05D003338 ORTHO05D004042 2.4e-08 62.8 103 35.0
HPP92_005521 Vanilla planifolia HOM05D003338 ORTHO05D000776 2.4e-08 62.8 101 35.6
Gohir.D12G017300 Gossypium hirsutum HOM05D003338 ORTHO05D004042 3.1e-08 62.4 103 34.0
Gorai.008G017600 Gossypium raimondii HOM05D003338 ORTHO05D004042 3.1e-08 62.4 103 34.0
Nitab4.5_0007624g0030 Nicotiana tabacum HOM05D003338 ORTHO05D004042 3.1e-08 62.4 103 37.9
RcHm_v2.0_Chr6g0270861 Rosa chinensis HOM05D003338 ORTHO05D004042 3.1e-08 62.4 105 36.2
SGA_v2.0_scaffold83G26379 Striga asiatica HOM05D003338 ORTHO05D004042 3.1e-08 62.4 163 30.7
arahy.Tifrunner.gnm1.ann1.Z13EKU Arachis hypogaea HOM05D003338 ORTHO05D031519 4.0e-08 62.0 53 54.7
DCAR_021909 Daucus carota HOM05D003338 ORTHO05D004042 4.0e-08 62.0 103 34.0
Glyma.08G067600 Glycine max HOM05D003338 ORTHO05D004042 4.0e-08 62.0 103 34.0
Lalb_Chr05g0217831 Lupinus albus HOM05D003338 ORTHO05D004042 4.0e-08 62.0 103 34.0
ClCG01G018340 Citrullus lanatus HOM05D003338 ORTHO05D004042 5.2e-08 61.6 103 34.0
Ciclev10029166m.g Citrus clementina HOM05D003338 ORTHO05D004042 5.2e-08 61.6 97 37.1
Pp3c18_10890 Physcomitrium patens HOM05D003338 ORTHO05D004042 5.2e-08 61.6 103 37.9
TAR376G0459 Trochodendron aralioides HOM05D003338 ORTHO05D004042 5.2e-08 61.6 97 37.1
VMungo0251G1603 Vigna mungo HOM05D003338 ORTHO05D004042 5.2e-08 61.6 53 54.7
Ca_18384_v3 Cicer arietinum L. HOM05D003338 ORTHO05D004042 6.8e-08 61.2 103 34.0
COL.COLO4_32400 Corchorus olitorius HOM05D003338 ORTHO05D004042 6.8e-08 61.2 97 35.1
HanXRQChr03g0073931 Helianthus annuus HOM05D003338 ORTHO05D004042 6.8e-08 61.2 103 34.0
Sed0023723 Sechium edule HOM05D003338 ORTHO05D004042 6.8e-08 61.2 103 34.0
TWI53G1042 Tripterygium wilfordii HOM05D003338 ORTHO05D004042 6.8e-08 61.2 103 35.0
GSVIVG01012511001 Vitis vinifera HOM05D003338 ORTHO05D004042 6.8e-08 61.2 103 33.0
CANSAT01G1860 Cannabis sativa HOM05D003338 ORTHO05D004042 8.9e-08 60.8 103 32.0
MELO3C007712.2 Cucumis melo HOM05D003338 ORTHO05D004042 8.9e-08 60.8 103 34.0
Gohir.A12G016700 Gossypium hirsutum HOM05D003338 ORTHO05D004042 8.9e-08 60.8 103 33.0
Phvul.002G213300 Phaseolus vulgaris HOM05D003338 ORTHO05D004042 8.9e-08 60.8 103 34.0
Psat7g101360 Pisum sativum HOM05D003338 ORTHO05D004042 8.9e-08 60.8 103 35.0
vmacro18556 Vaccinium macrocarpon HOM05D003338 ORTHO05D004042 8.9e-08 60.8 103 35.9
MELO3C018609.2 Cucumis melo HOM05D003338 ORTHO05D004042 1.2e-07 60.5 103 34.0
Sed0007926 Sechium edule HOM05D003338 ORTHO05D004042 1.5e-07 60.1 103 32.0
FAN23G0745 Fragaria x ananassa HOM05D003338 ORTHO05D004042 2.0e-07 59.7 103 34.0
FAN26G2744 Fragaria x ananassa HOM05D003338 ORTHO05D004042 2.0e-07 59.7 103 34.0
TWI59G0154 Tripterygium wilfordii HOM05D003338 ORTHO05D004042 2.0e-07 59.7 53 52.8
Zm00001eb184080 Zea mays HOM05D003338 ORTHO05D004042 2.0e-07 59.7 136 29.4
AagrBONN_evm.TU.Sc2ySwM_117.2860 Anthoceros agrestis HOM05D003338 ORTHO05D004042 2.6e-07 59.3 103 36.9
EL10Ac9g22066 Beta vulgaris HOM05D003338 ORTHO05D004042 2.6e-07 59.3 97 35.1
FAN28G3012 Fragaria x ananassa HOM05D003338 ORTHO05D004042 2.6e-07 59.3 103 34.0
Nitab4.5_0013275g0020 Nicotiana tabacum HOM05D003338 ORTHO05D004042 2.6e-07 59.3 103 35.9
PGR142G2944 Punica granatum HOM05D003338 ORTHO05D004042 2.6e-07 59.3 103 32.0
CSS0020786 Camellia sinensis var. sinensis HOM05D003338 ORTHO05D004042 3.4e-07 58.9 53 54.7
CSS0038454 Camellia sinensis var. sinensis HOM05D003338 ORTHO05D004042 3.4e-07 58.9 53 54.7
CSS0035314 Camellia sinensis var. sinensis HOM05D003338 ORTHO05D004042 4.4e-07 58.5 103 35.9
CSS0043251 Camellia sinensis var. sinensis HOM05D003338 ORTHO05D004042 4.4e-07 58.5 103 35.9
CBR_g3030 Chara braunii HOM05D003338 ORTHO05D004042 4.4e-07 58.5 88 36.4
ClCG09G016110 Citrullus lanatus HOM05D003338 ORTHO05D004042 4.4e-07 58.5 97 35.1
Duzib132G0063 Durio zibethinus HOM05D003338 ORTHO05D004042 4.4e-07 58.5 103 32.0
TAR628G0452 Trochodendron aralioides HOM05D003338 ORTHO05D004042 4.4e-07 58.5 97 37.1
Actinidia02395 Actinidia chinensis HOM05D003338 ORTHO05D004042 5.8e-07 58.2 103 33.0
ECA240G2148 Erigeron canadensis HOM05D003338 ORTHO05D004042 5.8e-07 58.2 103 33.0
FvH4_1g19620 Fragaria vesca HOM05D003338 ORTHO05D004042 5.8e-07 58.2 103 33.0
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 5.8e-07 58.2 103 33.0
Manes.12G126000 Manihot esculenta HOM05D003338 ORTHO05D004042 7.6e-07 57.8 103 31.1
RcHm_v2.0_Chr2g0111171 Rosa chinensis HOM05D003338 ORTHO05D004042 7.6e-07 57.8 53 50.9
vmacro01863 Vaccinium macrocarpon HOM05D003338 ORTHO05D004042 7.6e-07 57.8 97 35.1
AUR62017976 Chenopodium quinoa HOM05D003338 ORTHO05D004042 9.9e-07 57.4 53 49.1
Gohir.D03G035850 Gossypium hirsutum HOM05D003338 ORTHO05D004042 9.9e-07 57.4 163 28.2
VMungo0251G1841 Vigna mungo HOM05D003338 ORTHO05D004042 1.3e-06 57.0 103 32.0
Phvul.003G288700 Phaseolus vulgaris HOM05D003338 ORTHO05D004042 1.7e-06 56.6 103 32.0
CsaV3_7G006850 Cucumis sativus L. HOM05D003338 ORTHO05D004042 2.2e-06 56.2 103 33.0
Dinv16005 Davidia involucrata HOM05D003338 ORTHO05D004042 2.2e-06 56.2 53 49.1
Oeu014197.1 Olea europaea HOM05D003338 ORTHO05D004042 2.2e-06 56.2 97 34.0
Cpa.g.sc55.21 Carica papaya HOM05D003338 ORTHO05D004042 2.9e-06 55.8 103 31.1
Gorai.003G037500 Gossypium raimondii HOM05D003338 ORTHO05D004042 2.9e-06 55.8 163 28.2
Medtr8g068830 Medicago truncatula HOM05D003338 ORTHO05D004042 2.9e-06 55.8 103 31.1
Rhsim11G0142200 Rhododendron simsii HOM05D003338 ORTHO05D004042 3.8e-06 55.5 97 33.0
AUR62012880 Chenopodium quinoa HOM05D003338 ORTHO05D004042 4.9e-06 55.1 103 32.0
Migut.B00546 Erythranthe guttata HOM05D003338 ORTHO05D004042 4.9e-06 55.1 105 31.4
Lsat_1_v5_gn_9_115741 Lactuca sativa HOM05D003338 ORTHO05D004042 4.9e-06 55.1 103 33.0
Glyma.08G279200 Glycine max HOM05D003338 ORTHO05D004042 6.4e-06 54.7 103 31.1
Psat4g119720 Pisum sativum HOM05D003338 ORTHO05D004042 6.4e-06 54.7 103 31.1
GSVIVG01004475001 Vitis vinifera HOM05D003338 ORTHO05D004042 6.4e-06 54.7 103 32.0


User provided reference genes

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