Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 4.6e-49 197.6 101 100.0
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 5.3e-45 184.1 99 94.9
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 2.8e-38 161.8 82 100.0
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 3.4e-36 154.8 82 96.3
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 3.4e-36 154.8 82 95.1
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 7.6e-36 153.7 104 79.8
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 2.9e-35 151.8 99 83.8
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 1.9e-34 149.1 101 80.2
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 3.5e-33 144.8 102 76.5
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 1.3e-32 142.9 99 78.8
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 5.1e-32 141.0 99 77.8
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 8.7e-32 140.2 99 77.8
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 1.1e-31 139.8 99 76.8
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 1.5e-31 139.4 101 74.3
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 1.6e-30 136.0 104 74.0
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 6.9e-29 130.6 94 74.5
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 3.4e-28 128.3 98 68.4
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 5.9e-28 127.5 99 69.7
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 5.9e-28 127.5 99 69.7
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 1.3e-27 126.3 99 71.7
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 2.9e-27 125.2 108 65.7
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 3.8e-27 124.8 99 69.7
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 5.0e-27 124.4 99 71.7
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 6.5e-27 124.0 99 69.7
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 6.5e-27 124.0 99 69.7
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 1.4e-26 122.9 98 69.4
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 1.4e-26 122.9 99 68.7
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 5.5e-26 120.9 99 69.7
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 9.4e-26 120.2 98 67.3
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 1.6e-25 119.4 126 56.3
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 2.1e-25 119.0 101 66.3
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 2.7e-25 118.6 97 69.1
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.7e-25 118.6 98 67.3
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 2.7e-25 118.6 98 67.3
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 4.6e-25 117.9 97 66.0
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 6.1e-25 117.5 80 81.2
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 6.1e-25 117.5 80 81.2
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 7.9e-25 117.1 96 67.7
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 1.0e-24 116.7 96 65.6
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 1.0e-24 116.7 96 65.6
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 1.0e-24 116.7 96 65.6
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 1.0e-24 116.7 105 63.8
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 1.0e-24 116.7 98 66.3
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 1.4e-24 116.3 102 64.7
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.8e-24 115.9 98 65.3
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 2.3e-24 115.5 97 68.0
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 3.0e-24 115.2 99 64.6
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 3.0e-24 115.2 100 65.0
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 1.1e-23 113.2 99 62.6
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 1.1e-23 113.2 99 64.6
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 2.0e-23 112.5 99 63.6
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 2.0e-23 112.5 99 63.6
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 2.5e-23 112.1 96 63.5
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 2.5e-23 112.1 96 61.5
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 7.4e-23 110.5 93 64.5
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 7.4e-23 110.5 93 64.5
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 7.4e-23 110.5 99 63.6
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 7.4e-23 110.5 99 62.6
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 7.4e-23 110.5 101 60.4
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 9.7e-23 110.2 98 62.2
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 1.7e-22 109.4 96 60.4
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 2.2e-22 109.0 96 59.4
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 2.2e-22 109.0 101 62.4
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 4.8e-22 107.8 104 59.6
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 4.8e-22 107.8 99 60.6
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 1.1e-21 106.7 98 61.2
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 1.4e-21 106.3 97 61.9
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 1.8e-21 105.9 99 59.6
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 3.1e-21 105.1 97 60.8
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 5.3e-21 104.4 98 56.1
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 6.9e-21 104.0 98 57.1
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 6.9e-21 104.0 99 59.6
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 1.5e-20 102.8 97 60.8
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 2.0e-20 102.4 88 65.9
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 2.0e-20 102.4 93 60.2
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 2.0e-20 102.4 96 53.1
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 3.4e-20 101.7 106 56.6
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 5.9e-20 100.9 88 63.6
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 5.9e-20 100.9 94 60.6
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 7.7e-20 100.5 93 59.1
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 1.7e-19 99.4 81 70.4
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 1.7e-19 99.4 97 57.7
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 1.7e-19 99.4 97 57.7
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 2.2e-19 99.0 80 70.0
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 3.8e-19 98.2 95 60.0
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 6.5e-19 97.4 87 60.9
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 8.5e-19 97.1 95 58.9
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 8.5e-19 97.1 79 70.9
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.9e-18 95.9 79 70.9
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 3.2e-18 95.1 91 50.5
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 5.5e-18 94.4 88 61.4
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 1.2e-17 93.2 87 59.8
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 2.1e-17 92.4 86 61.6
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 2.7e-17 92.0 96 55.2
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 3.6e-17 91.7 99 55.6
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 4.7e-17 91.3 94 52.1
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 2.3e-16 89.0 81 59.3
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 1.1e-15 86.7 100 57.0
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 1.3e-14 83.2 86 59.3
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 1.3e-14 83.2 86 55.8
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 2.4e-13 79.0 91 49.5
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 4.1e-13 78.2 87 50.6
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 2.9e-11 72.0 98 41.8
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 3.8e-11 71.6 113 45.1
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 1.5e-10 69.7 93 46.2
AT1G29580 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 1.9e-10 69.3 98 44.9
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 4.2e-10 68.2 105 45.7
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 4.2e-10 68.2 94 50.0
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 5.5e-10 67.8 89 51.7
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 5.5e-10 67.8 89 51.7
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 9.4e-10 67.0 66 57.6
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 1.2e-09 66.6 87 42.5
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.1e-09 65.9 59 57.6
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 2.3e-08 62.4 61 55.7
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 1.5e-07 59.7 80 43.8
Pp3c21_4920 Physcomitrium patens HOM05D006504 ORTHO05D007867 5.7e-07 57.8 88 38.6
Aa31LG8G1010 Aethionema arabicum HOM05D006504 ORTHO05D007867 1.3e-06 56.6 58 50.0
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 3.7e-06 55.1 52 63.5


User provided reference genes

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