Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 8.5e-163 577.0 308 100.0
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 1.4e-112 410.2 391 67.3
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 9.6e-106 387.5 410 62.4
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 4.2e-101 372.1 450 56.9
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 5.4e-101 371.7 404 61.6
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 5.4e-101 371.7 428 59.3
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 1.3e-99 367.1 440 56.6
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 2.3e-99 366.3 391 62.1
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 2.3e-99 366.3 391 62.1
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 9.6e-98 360.9 442 55.4
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 5.3e-96 355.1 448 54.9
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 4.5e-95 352.1 407 59.7
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 1.9e-93 346.7 349 63.6
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 7.9e-92 341.3 432 55.8
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 2.4e-88 329.7 280 66.4
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 2.7e-76 289.7 267 65.2
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 1.5e-74 283.9 140 100.0
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 1.8e-72 276.9 170 82.9
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 1.8e-72 276.9 170 82.9
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 2.4e-64 250.0 286 51.0
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 9.4e-61 238.0 164 68.3
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 1.6e-60 237.3 168 67.9
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 2.1e-60 236.9 314 46.2
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 4.7e-60 235.7 168 67.3
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 8.0e-60 235.0 168 67.3
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 1.4e-59 234.2 165 67.3
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 3.0e-59 233.0 168 67.9
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 5.2e-59 232.3 166 66.3
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 6.7e-59 231.9 382 42.4
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 1.5e-58 230.7 168 67.3
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 2.0e-58 230.3 348 47.4
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 2.2e-57 226.9 163 65.0
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 2.8e-57 226.5 165 66.7
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 3.7e-57 226.1 165 66.1
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 4.8e-57 225.7 166 63.9
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 4.8e-57 225.7 165 64.8
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 4.8e-57 225.7 166 65.1
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 4.8e-57 225.7 165 64.2
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 4.8e-57 225.7 165 66.1
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 6.3e-57 225.3 165 64.2
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 6.3e-57 225.3 165 66.1
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 8.2e-57 224.9 165 64.8
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 1.4e-56 224.2 354 44.4
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 1.4e-56 224.2 336 46.1
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 1.8e-56 223.8 315 45.1
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 2.4e-56 223.4 319 48.9
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 4.1e-56 222.6 336 44.3
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 4.1e-56 222.6 345 44.3
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 5.3e-56 222.2 330 43.0
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 9.1e-56 221.5 311 49.8
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 9.1e-56 221.5 175 61.7
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 1.2e-55 221.1 166 63.3
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 2.6e-55 219.9 165 63.0
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 5.9e-55 218.8 164 64.0
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 5.9e-55 218.8 166 63.3
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 5.9e-55 218.8 166 63.3
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 7.7e-55 218.4 343 46.6
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 7.7e-55 218.4 165 63.6
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 1.3e-54 217.6 165 64.2
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 1.3e-54 217.6 166 63.3
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 2.2e-54 216.9 165 64.2
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 2.2e-54 216.9 166 62.7
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 2.2e-54 216.9 165 64.2
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 3.8e-54 216.1 166 62.7
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 3.8e-54 216.1 166 62.7
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 3.8e-54 216.1 371 42.9
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 5.0e-54 215.7 165 62.4
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 5.0e-54 215.7 165 62.4
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 5.0e-54 215.7 165 62.4
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 8.5e-54 214.9 166 62.0
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 1.5e-53 214.2 165 61.8
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.5e-53 214.2 170 62.4
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 1.5e-53 214.2 165 64.2
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 3.2e-53 213.0 174 60.3
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 4.2e-53 212.6 165 61.2
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 5.5e-53 212.2 166 64.5
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 7.2e-53 211.8 310 48.4
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 7.2e-53 211.8 166 62.0
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 1.6e-52 210.7 165 61.8
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.4e-51 207.6 166 59.6
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 3.0e-51 206.5 166 60.8
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 3.0e-51 206.5 165 63.0
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 5.2e-51 205.7 165 61.2
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 1.2e-50 204.5 166 60.8
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 2.0e-50 203.8 166 62.7
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 7.5e-50 201.8 159 59.1
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 3.7e-49 199.5 185 55.1
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 3.7e-49 199.5 336 43.5
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 3.7e-49 199.5 165 61.2
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 1.8e-48 197.2 173 56.6
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 2.4e-48 196.8 165 60.0
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 4.1e-48 196.1 387 36.2
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 5.3e-48 195.7 365 40.5
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 7.0e-48 195.3 367 41.1
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 7.0e-48 195.3 165 58.2
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 2.9e-46 189.9 173 54.9
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 5.0e-46 189.1 166 57.8
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 6.5e-46 188.7 210 48.6
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 6.5e-46 188.7 349 40.1
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 1.1e-45 188.0 138 64.5
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 1.5e-45 187.6 318 39.9
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 1.2e-44 184.5 107 86.0
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 1.4e-43 181.0 295 40.3
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 2.0e-42 177.2 187 51.3
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 9.8e-42 174.9 368 36.7
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 1.7e-41 174.1 361 40.2
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 1.4e-40 171.0 296 41.6
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 4.1e-40 169.5 334 41.0
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 1.6e-39 167.5 141 60.3
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 1.5e-37 161.0 144 56.2
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 3.6e-28 129.8 92 65.2
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.3e-25 121.3 90 62.2
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 1.2e-20 104.8 144 35.4
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 1.6e-20 104.4 177 32.8
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 2.1e-20 104.0 81 58.0
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 1.1e-19 101.7 80 60.0
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 8.9e-19 98.6 76 60.5
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 2.6e-18 97.1 134 36.6
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 2.9e-17 93.6 64 64.1
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 8.3e-17 92.0 62 72.6
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 5.4e-16 89.4 69 65.2
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 7.8e-15 85.5 64 62.5
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 3.0e-14 83.6 82 46.3
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 6.6e-14 82.4 83 51.8
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 2.8e-12 77.0 86 47.7
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 3.6e-12 76.6 63 58.7
CBR_g41404 Chara braunii HOM05D002505 ORTHO05D006559 6.6e-06 55.8 72 34.7


User provided reference genes

Program Settings