Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 5.4e-119 431.0 220 100.0
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 5.4e-119 431.0 220 100.0
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 2.8e-115 418.7 237 92.4
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 1.1e-106 390.2 230 89.1
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 8.1e-99 364.0 229 83.8
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 1.2e-97 360.1 229 82.5
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 3.8e-96 355.1 229 81.7
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 5.4e-95 351.3 221 83.3
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 1.2e-94 350.1 229 80.8
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 6.0e-94 347.8 231 81.4
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 2.3e-93 345.9 229 79.9
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 8.7e-93 344.0 230 80.0
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 1.1e-92 343.6 231 80.1
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 7.1e-87 324.3 231 75.8
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 8.7e-85 317.4 224 76.8
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 1.5e-84 316.6 230 73.9
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 5.8e-81 304.7 233 70.8
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 1.0e-77 293.9 243 67.1
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 1.0e-77 293.9 243 67.1
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 2.5e-76 289.3 241 66.4
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 2.5e-76 289.3 223 70.9
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 4.1e-74 282.0 234 65.8
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 5.3e-74 281.6 233 69.1
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.1e-71 273.9 223 65.9
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 5.5e-71 271.6 223 65.5
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 6.1e-70 268.1 233 62.7
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 7.9e-70 267.7 230 64.8
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 7.9e-70 267.7 230 64.8
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 3.0e-69 265.8 233 63.1
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 3.9e-69 265.4 224 64.3
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 3.9e-69 265.4 233 62.7
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 8.7e-69 264.2 224 64.3
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 1.6e-67 260.0 235 63.8
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 1.4e-66 256.9 214 66.8
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 4.1e-66 255.4 236 62.3
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 2.0e-65 253.1 233 60.9
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 1.0e-64 250.8 266 58.3
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 2.2e-64 249.6 228 61.4
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 5.0e-64 248.4 238 61.3
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 1.1e-63 247.3 249 59.0
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.1e-62 243.0 235 61.7
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 6.1e-62 241.5 254 58.7
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 2.3e-61 239.6 224 60.7
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 4.4e-60 235.3 225 60.9
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 4.4e-60 235.3 234 59.0
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 5.7e-60 235.0 239 59.8
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 7.4e-60 234.6 233 58.4
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 1.7e-59 233.4 234 57.7
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 4.8e-59 231.9 227 60.8
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 1.8e-58 229.9 225 58.7
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 6.9e-58 228.0 223 57.8
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 5.9e-57 224.9 233 56.7
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 7.7e-57 224.6 233 55.8
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 7.7e-57 224.6 234 56.4
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 1.0e-56 224.2 234 57.3
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 1.3e-56 223.8 234 57.3
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 2.2e-56 223.0 234 56.4
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 2.9e-56 222.6 233 55.8
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 3.8e-56 222.2 224 58.0
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.5e-55 219.5 249 55.0
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 3.2e-55 219.2 224 56.2
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 5.5e-55 218.4 234 54.7
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 2.7e-54 216.1 234 54.3
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 4.7e-54 215.3 234 56.8
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 1.0e-53 214.2 224 54.0
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 1.8e-53 213.4 233 54.9
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.8e-53 213.4 236 55.5
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 1.8e-53 213.4 234 55.1
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 1.8e-53 213.4 224 56.2
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 3.9e-53 212.2 235 54.5
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 5.2e-53 211.8 233 54.5
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 6.7e-53 211.5 235 53.2
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.3e-52 209.1 234 55.6
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 7.4e-52 208.0 235 53.6
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 7.4e-52 208.0 237 53.6
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 9.7e-52 207.6 224 54.9
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 2.8e-51 206.1 231 56.7
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 1.1e-50 204.1 234 54.7
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 1.4e-50 203.8 236 52.5
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 2.4e-50 203.0 234 53.4
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 4.1e-50 202.2 225 55.1
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 5.3e-50 201.8 241 52.3
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 9.1e-50 201.1 234 53.0
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 9.1e-50 201.1 234 53.8
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 1.2e-49 200.7 224 53.1
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 2.6e-49 199.5 233 51.9
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 3.5e-49 199.1 229 52.0
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 4.5e-49 198.7 233 51.9
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.0e-48 197.6 235 53.2
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.2e-48 196.4 233 51.9
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 2.2e-48 196.4 235 53.2
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 5.0e-48 195.3 234 53.0
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 8.5e-48 194.5 233 52.8
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.9e-47 193.4 234 52.6
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 1.9e-47 193.4 234 51.3
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 2.5e-47 193.0 234 50.0
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 5.5e-47 191.8 240 52.1
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 1.2e-46 190.7 234 50.4
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 2.1e-46 189.9 234 51.3
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 2.1e-46 189.9 233 50.6
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 2.7e-46 189.5 239 49.4
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 4.7e-46 188.7 234 50.0
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 8.0e-46 188.0 243 50.6
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 5.2e-45 185.3 234 50.9
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 3.3e-44 182.6 240 47.9
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 9.7e-44 181.0 230 50.9
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 9.7e-44 181.0 235 49.8
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 2.8e-43 179.5 236 47.5
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 4.8e-43 178.7 247 47.8
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 4.8e-43 178.7 236 50.4
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 1.8e-42 176.8 243 49.0
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 2.4e-42 176.4 234 49.6
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 5.3e-42 175.3 234 48.3
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 9.1e-42 174.5 232 48.3
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 2.0e-41 173.3 246 44.3
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 5.9e-41 171.8 236 48.3
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 5.9e-41 171.8 235 46.8
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 7.2e-39 164.9 237 46.0
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 1.2e-38 164.1 194 50.5
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 6.1e-38 161.8 151 59.6
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 1.0e-37 161.0 238 45.4
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 1.5e-36 157.1 223 47.1
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.0e-36 156.8 246 45.5
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 1.3e-35 154.1 192 51.0
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.8e-35 152.9 246 44.7
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 2.8e-35 152.9 146 58.9
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 3.7e-35 152.5 191 50.8
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 8.3e-35 151.4 223 46.6
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 5.4e-34 148.7 146 56.8
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.2e-33 147.5 155 51.6
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 3.5e-33 146.0 224 45.5
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 8.5e-32 141.4 142 56.3
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 2.5e-31 139.8 143 55.9
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 4.7e-30 135.6 147 51.0
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 8.0e-30 134.8 118 62.7
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.0e-29 134.4 246 41.9
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 2.0e-28 130.2 141 53.9
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 6.3e-27 125.2 73 87.7
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 1.2e-25 120.9 146 50.7
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 6.6e-24 115.2 165 48.5
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 8.0e-22 108.2 120 54.2
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 7.0e-18 95.1 115 49.6
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 5.6e-15 85.5 248 32.7
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 2.6e-12 76.6 86 50.0
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 3.2e-10 69.7 53 67.9
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 5.4e-10 68.9 63 58.7
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 1.7e-08 63.9 47 68.1
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 5.0e-08 62.4 72 56.9
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 4.3e-07 59.3 251 28.3
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 4.3e-07 59.3 93 39.8


User provided reference genes

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