Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 1.9e-47 192.2 98 100.0
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 3.4e-41 171.4 88 98.9
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 1.2e-38 162.9 93 91.4
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 3.6e-38 161.4 92 91.3
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 4.6e-38 161.0 93 91.4
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 4.6e-38 161.0 91 93.4
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 7.9e-38 160.2 84 97.6
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 7.9e-38 160.2 88 95.5
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 1.0e-37 159.8 89 95.5
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 1.0e-37 159.8 89 95.5
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 1.0e-37 159.8 89 95.5
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 1.0e-37 159.8 89 95.5
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 1.4e-37 159.5 90 93.3
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 2.3e-37 158.7 92 90.2
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 3.9e-37 157.9 82 97.6
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 1.5e-36 156.0 93 87.1
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 2.0e-36 155.6 90 88.9
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 1.1e-34 149.8 93 83.9
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 4.1e-34 147.9 90 83.3
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 5.3e-34 147.5 93 82.8
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 6.9e-34 147.1 95 80.0
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 3.4e-33 144.8 90 83.3
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 5.9e-33 144.1 92 80.4
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 1.7e-32 142.5 84 83.3
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 1.7e-32 142.5 96 77.1
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 1.7e-32 142.5 98 74.5
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 2.2e-32 142.1 95 75.8
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 2.9e-32 141.7 96 77.1
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 5.0e-32 141.0 84 83.3
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 6.5e-32 140.6 84 83.3
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 8.5e-32 140.2 78 87.2
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 1.1e-31 139.8 82 82.9
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.1e-31 139.8 82 82.9
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.4e-31 139.4 93 77.4
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.9e-31 139.0 99 69.7
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 2.5e-31 138.7 94 76.6
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 2.5e-31 138.7 93 76.3
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 3.2e-31 138.3 84 79.8
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 3.2e-31 138.3 94 75.5
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 4.2e-31 137.9 84 81.0
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 4.2e-31 137.9 101 72.3
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 5.5e-31 137.5 84 79.8
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 5.5e-31 137.5 101 71.3
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 7.2e-31 137.1 82 80.5
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 9.4e-31 136.7 97 74.2
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.6e-30 136.0 102 68.6
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.6e-30 136.0 82 80.5
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 1.6e-30 136.0 95 73.7
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 2.1e-30 135.6 97 72.2
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 2.1e-30 135.6 84 77.4
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 2.1e-30 135.6 94 71.3
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 2.7e-30 135.2 97 72.2
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 4.7e-30 134.4 82 78.0
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 6.1e-30 134.0 93 72.0
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 6.1e-30 134.0 96 71.9
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 6.1e-30 134.0 96 71.9
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 7.9e-30 133.7 97 70.1
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 1.0e-29 133.3 79 84.8
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.4e-29 132.9 86 76.7
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 2.3e-29 132.1 97 70.1
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.3e-29 132.1 81 76.5
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 2.3e-29 132.1 100 68.0
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 3.9e-29 131.3 79 81.0
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 5.1e-29 131.0 97 68.0
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 6.7e-29 130.6 89 75.3
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 6.7e-29 130.6 99 70.7
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 1.1e-28 129.8 95 71.6
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 1.1e-28 129.8 94 69.1
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.5e-28 129.4 86 74.4
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 2.0e-28 129.0 84 73.8
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.0e-28 129.0 79 75.9
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 2.6e-28 128.6 86 75.6
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 2.6e-28 128.6 93 72.0
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.3e-28 128.3 93 67.7
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.3e-28 128.3 97 66.0
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 4.4e-28 127.9 94 70.2
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 5.7e-28 127.5 87 73.6
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 5.7e-28 127.5 94 72.3
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 1.3e-27 126.3 85 75.3
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 1.3e-27 126.3 96 68.8
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 1.7e-27 125.9 86 70.9
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.7e-27 125.9 86 73.3
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.7e-27 125.9 79 82.3
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 2.2e-27 125.6 88 72.7
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 2.8e-27 125.2 84 71.4
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 2.8e-27 125.2 92 72.8
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 4.8e-27 124.4 79 73.4
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 4.8e-27 124.4 99 64.6
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 6.3e-27 124.0 79 75.9
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 6.3e-27 124.0 102 62.7
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 8.2e-27 123.6 96 71.9
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 8.2e-27 123.6 84 75.0
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 8.2e-27 123.6 86 70.9
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 8.2e-27 123.6 94 64.9
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 1.4e-26 122.9 84 70.2
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 7.0e-26 120.6 99 64.6
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 1.5e-25 119.4 89 70.8
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 1.5e-25 119.4 86 72.1
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 1.5e-25 119.4 86 72.1
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 2.0e-25 119.0 94 66.0
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 7.7e-25 117.1 85 71.8
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 1.0e-24 116.7 83 73.5
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 2.2e-24 115.5 86 67.4
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 2.2e-24 115.5 94 64.9
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 2.2e-24 115.5 81 71.6
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 3.8e-24 114.8 83 69.9
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 6.5e-24 114.0 86 66.3
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 8.5e-24 113.6 86 69.8
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.5e-23 112.8 90 67.8
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 1.9e-23 112.5 82 67.1
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 1.6e-22 109.4 79 68.4
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 3.6e-22 108.2 84 67.9
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 3.6e-22 108.2 92 63.0
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 4.7e-22 107.8 87 66.7
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 4.7e-22 107.8 91 63.7
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 1.4e-21 106.3 80 66.2
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 3.0e-21 105.1 78 70.5
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 4.0e-21 104.8 86 60.5
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 5.2e-21 104.4 85 65.9
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 2.0e-20 102.4 98 58.2
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 5.7e-20 100.9 86 62.8
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.7e-19 99.4 82 63.4
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 2.2e-19 99.0 76 64.5
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 4.8e-19 97.8 87 62.1
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 4.8e-19 97.8 87 62.1
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 8.2e-19 97.1 72 68.1
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 8.2e-19 97.1 84 59.5
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 1.4e-18 96.3 82 64.6
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 1.4e-18 96.3 120 48.3
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 1.8e-18 95.9 64 75.0
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 1.7e-16 89.4 97 52.6
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 7.2e-15 84.0 85 54.1
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 2.1e-14 82.4 75 61.3
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.7e-14 82.0 61 65.6
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 3.6e-14 81.6 45 84.4
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 6.1e-14 80.9 76 61.8
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 1.2e-12 76.6 49 73.5
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 4.4e-12 74.7 49 73.5
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 4.4e-12 74.7 49 73.5
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 5.7e-12 74.3 54 68.5
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 9.8e-12 73.6 59 62.7
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 2.2e-11 72.4 89 51.7


User provided reference genes

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