Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 1.3e-58 229.6 116 100.0
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 1.3e-52 209.5 114 96.5
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 1.3e-52 209.5 114 96.5
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 1.3e-52 209.5 114 96.5
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 6.7e-52 207.2 114 95.6
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 6.7e-52 207.2 114 95.6
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 6.7e-52 207.2 114 95.6
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 9.7e-51 203.4 114 93.0
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 6.3e-50 200.7 120 90.8
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 2.1e-37 159.1 91 94.5
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 6.1e-37 157.5 94 91.5
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 3.0e-36 155.2 114 76.3
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 2.9e-31 138.7 133 63.9
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 8.5e-31 137.1 133 63.2
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 1.5e-30 136.3 133 63.2
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 1.5e-30 136.3 133 63.2
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 2.5e-30 135.6 103 73.8
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 1.2e-29 133.3 135 63.7
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 6.7e-28 127.5 133 59.4
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 6.7e-28 127.5 133 59.4
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 6.7e-28 127.5 133 59.4
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 6.7e-28 127.5 133 59.4
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 6.7e-28 127.5 133 60.2
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 2.6e-27 125.6 133 58.6
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 5.7e-27 124.4 133 58.6
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 7.4e-27 124.0 132 59.1
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 5.3e-25 117.9 133 57.9
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 7.0e-25 117.5 130 59.2
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 9.1e-25 117.1 134 55.2
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 3.8e-23 111.7 133 54.1
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 3.0e-20 102.1 133 48.9
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 8.8e-20 100.5 69 76.8
BcaC07g37609 Brassica carinata HOM05D004269 ORTHO05D013520 4.1e-17 91.7 81 65.4
C06p14100 Brassica napus HOM05D004269 ORTHO05D013520 4.1e-17 91.7 53 92.5
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 5.0e-15 84.7 135 43.7
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 1.5e-14 83.2 131 45.8
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 7.2e-14 80.9 136 44.1
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 1.6e-13 79.7 113 47.8
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 2.7e-13 79.0 72 66.7
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.0e-12 77.0 135 43.7
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 1.4e-12 76.6 106 47.2
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 4.0e-12 75.1 112 45.5
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 4.0e-12 75.1 121 43.0
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 4.0e-12 75.1 106 47.2
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 4.0e-12 75.1 122 46.7
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 4.0e-12 75.1 128 43.0
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 1.5e-11 73.2 121 42.1
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 1.5e-11 73.2 121 42.1
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 2.0e-11 72.8 126 42.9
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 2.0e-11 72.8 106 46.2
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 2.0e-11 72.8 133 40.6
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 2.6e-11 72.4 66 62.1
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 3.4e-11 72.0 134 41.8
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 5.7e-11 71.2 128 39.8
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 5.7e-11 71.2 111 43.2
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 5.7e-11 71.2 136 40.4
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 5.7e-11 71.2 130 40.8
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 5.7e-11 71.2 135 43.0
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 5.7e-11 71.2 133 39.8
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 5.7e-11 71.2 66 60.6
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 9.8e-11 70.5 108 46.3
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 9.8e-11 70.5 128 40.6
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 9.8e-11 70.5 66 60.6
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 1.3e-10 70.1 66 60.6
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 1.3e-10 70.1 144 43.8
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 1.3e-10 70.1 133 39.8
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 1.7e-10 69.7 66 57.6
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 1.7e-10 69.7 134 41.8
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 1.7e-10 69.7 135 40.7
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 2.2e-10 69.3 140 40.0
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 2.2e-10 69.3 113 46.0
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 2.8e-10 68.9 130 40.0
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 2.8e-10 68.9 130 40.0
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 3.7e-10 68.6 107 44.9
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 3.7e-10 68.6 144 43.8
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 3.7e-10 68.6 109 44.0
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 4.8e-10 68.2 120 44.2
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 4.8e-10 68.2 132 40.9
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 4.8e-10 68.2 120 44.2
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 4.8e-10 68.2 66 60.6
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 4.8e-10 68.2 66 57.6
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 6.3e-10 67.8 66 57.6
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 6.3e-10 67.8 133 40.6
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 8.3e-10 67.4 66 57.6
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 8.3e-10 67.4 66 57.6
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 8.3e-10 67.4 66 56.1
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.1e-09 67.0 66 59.1
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 1.1e-09 67.0 66 60.6
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 1.1e-09 67.0 132 40.9
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 1.4e-09 66.6 66 56.1
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.4e-09 66.6 66 56.1
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 1.4e-09 66.6 130 38.5
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 1.4e-09 66.6 66 57.6
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 1.8e-09 66.2 66 56.1
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 1.8e-09 66.2 110 46.4
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 2.4e-09 65.9 66 57.6
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 2.4e-09 65.9 129 43.4
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 2.4e-09 65.9 66 57.6
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 2.4e-09 65.9 124 40.3
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 2.4e-09 65.9 132 40.2
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 3.1e-09 65.5 135 38.5
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 3.1e-09 65.5 66 56.1
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 3.1e-09 65.5 126 40.5
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 3.1e-09 65.5 66 57.6
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 4.1e-09 65.1 66 56.1
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 4.1e-09 65.1 66 57.6
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 4.1e-09 65.1 63 57.1
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 4.1e-09 65.1 60 63.3
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 4.1e-09 65.1 111 41.4
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 5.4e-09 64.7 74 54.1
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 5.4e-09 64.7 66 56.1
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 5.4e-09 64.7 132 37.9
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 5.4e-09 64.7 66 56.1
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 7.0e-09 64.3 66 57.6
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 7.0e-09 64.3 66 54.5
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 9.1e-09 63.9 61 63.9
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 9.1e-09 63.9 129 37.2
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 1.2e-08 63.5 66 54.5
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 1.2e-08 63.5 66 56.1
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 2.0e-08 62.8 131 38.9
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 2.0e-08 62.8 66 54.5
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 2.0e-08 62.8 66 54.5
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 2.0e-08 62.8 71 53.5
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 1.3e-07 60.1 66 53.0
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 2.3e-07 59.3 66 51.5
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 2.3e-07 59.3 63 55.6
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.9e-07 58.9 48 66.7
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 1.9e-06 56.2 66 48.5
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 3.3e-06 55.5 74 48.6
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 5.5e-06 54.7 66 50.0


User provided reference genes

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